Elle Microstructural Modelling SVN Code

merge:
User option to specify the merging of a specified flynn with another
flynn i.e. remove a particular boundary
Added merge.h, changed merge.elle.cc and merge.main.cc

split:
Viscosity:
Use F_ATTRIB_NAME in file reading and ATTRIB_NAME in code for
setting/getting.

sub_gg:
Fixed odd parameter name in declaration of CalcMisorientationEuler

mat.cc:
Order wrong for matrix multiplication
Fixed sign (error found by Albert)
Added matrix_vector multiplication function

Imakefile:
Added matrix_vector multiplication function

plotaxes.elle.cc:
Changes to parameter lists to allow output of polar data (angle,
azimuth) converted from Euler. Currently only if unodes only in input
file. Will make it a user option and integrate into showelle.
Stereonet matches ebsd software C-axis, lower hemisphere so labels changed.

shifty:
Imakefile - make base and wx. Base makes batch version in binb, wx
copies the batch to binwx. Would you want a gui version?
shifty.h - does nothing but I removed the refs to manuel
shifty.elle.cc - put insome checks for file reading, initialising
variables and writing shift values to same precision as Elle files

plot_ugrid:
Imakefile - only make base and wx.

convert/basil
polygonavg.f:
Checked strain calcs and reverted to ASUM = ASUM + TRI
This should be right, let me know if you have problems with strain
values
Added subroutine MATCHMESHNODE used in matching unodes before and after
deformation
Added subroutine NTRPLTPNT - currently not tested or used so DO NOT USE
Added subroutine CROSSINGS - used while finding pt_in_poly error when pt
on x=0 boundary

c_funcs.cc
Added call to basecode function pointonsegment

Comment symbol error

Changed things (mainly added includes) to get it to compile using gcc 4.3.2. Excluded latte, to many things I did not understand...

ASUM is twice the area of the polygon so INCR_S and BULK_S were incorrect

fix bug when segment is attached to a corner node

change scale to make better movies

fix path to elle

add shifty and plot_ugrid to makefiles

First Commit: utility to dran lagrangian grids based on square unode distributions