Elle Microstructural Modelling SVN Code

replace endl with std::endl

check flynn is active before calling fn to write poly file.
Should this be further down the call tree?

get rid of junk debug line

Postscript generation was broken because box origin was not calculated
correctly - caused by coding error when doing general shear changes.

Rearranging code so window adjusts to cell dimensions when file is opened
via command line or GUI (previously only GUI)

Rearranging code so window dimensions adjust to cell dimensions when a
file is opened via command line or GUI (previously only GUI)

Changed install.sh to allow lib build in correct order for "all" option

Modified Files:
plotcode/cmndefs.h plotcode/menus.c plotcode/options.h
plotcode/plot.c plotcode/plot.h plotcode/setup.c
plotcode/types.h
Changes required to implement pure shear - unit cell becomes
rectangular.
Display flynn attribute S_EXPONENT

Passing and returning flynn attribute S_EXPONENT to allow variable
stress/strain exponent in basil deformation.
Allow and track pure shear
Put in soft link for pnm2elle -> ppm2elle

Modified Files:
utilities/convert/basil/basil2elle.cc
utilities/convert/basil/elle2poly.cc
utilities/convert/ppm/Imakefile
utilities/reposition/reposition.elle.cc
utilities/view/show.elle.cc

correcting syntax error