Electrophysiology & circular stats tools Wiki
Data analysis and circular statistics with OpenElectrophy and R
Status: Beta
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Requirements
Install Eclipse and PyDev. You can find Eclipse in the Ubuntu Software Archive or on the Eclipse homepage. PyDev has to be installed manually, check the manual on the PyDev homepage.
Eclipse:
http://www.eclipse.org/downloads/
PyDev:
http://pydev.org/download.html
http://pydev.org/manual_101_root.html
Install also R and the R commander. You can find both in the Ubuntu Software Center.
R home page:
http://www.r-project.org/
R commander home page:
http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/
R statistics
Install the package circular. For that, open a Ubuntu Terminal and start R:
Then type:
install.packages("circular")Homepage of the circular statistics project:
http://cran.r-project.org/web/packages/circular/index.html
Just save the following code as a .R file and run it from the R commander by calling it:
for example:
source("/home/electrophy/Documents/circular01.R")Last edit: Christian Tatarau 2012-06-01
Install OpenElectrophy
http://packages.python.org/OpenElectrophy/
Install the R package "sowas", which we use for wavelet coherence calculation:
http://tocsy.pik-potsdam.de/wavelets/
We also need the Python-R interface "RPy":
http://rpy.sourceforge.net/