Re: [Ecell-devel] Cannot Write ECD File

[Moriyoshi K. <mo...@sf...>]

Hi,

Sorry for the delay. I just identified the cause of the problem, and I
am going to release the fixed version shortly as this is critical. If
you are in hurry, check out the subversion repository.

Thanks.

-- moriyoshi



On Mon, Mar 29, 2010 at 11:13 PM, Erin <she...@um...> wrote:
> Hello,
>
> I posted this to ecell-users but I think it's actually a bug, so I'll
> repost here.  After running a simulation via an ess file, I get the
> following errors:
>
> erin@bobby:~/modelingFiles$ ecell3-session experiment.py
> Running for a minute
> Simulation complete!
> Traceback (most recent call last):
>  File \"/usr/bin/ecell3-session\", line 234, in <module>
>    main()
>  File \"/usr/bin/ecell3-session\", line 229, in main
>    aConsole.loadScript( anEssFile, aParameters )
>  File \"/usr/bin/ecell3-session\", line 56, in loadScript
>    execfile( ecsFile, aContext )
>  File \"experiment.py\", line 68, in <module>
>    malateResults.save( \'malateResults.ecd\' )
>  File \"/usr/lib/python2.6/dist-packages/ecell/ECDDataFile.py\", line 91,
> in save
>    TableIO.writeArray( self.theFileName, self.theData, 1 )
>  File \"/usr/lib/python2.6/dist-packages/ecell/TableIO.py\", line 79, in
> writeArray
>    t[\'rows\'] = data.shape[0]
> AttributeError: \'ecell._ecs.DataPointVector\' object has no attribute
> \'shape\'
>
> The file "malateResults" is created however, it contains only headers
> and no data.
>
> I am using E-Cell 3.2.0p1 on Ubuntu 9.10.
>
> Thanks,
>
> Erin
>
> --
> Erin Rachael Shellman
> The University of Michigan
> Bioinformatics PhD Candidate
> http://www.erinshellman.com
> she...@um...
> (937) 321.1129
>
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