[Ecell-devel] Session-monitor Interface Crash

[Erin <she...@um...>]

Hello,

I'm having a lot of problems developing models because when I try to
test them the Osogo session monitor hangs and crashes.  To simplify I
tried to use the sample em file from page 10 of the E-Cell handbook
("ecell3-users-manual-0606.pdf"), however this simple em also crashes
the Osago session monitor when I try to run the model.  I get no
errors when loading the model.  I'm not sure how to get an error log
when this happens so I can't be more specific, but I recommend that
you try to run the sample em also and see whether it causes the
monitor to hang.

I am using E-Cell 3.2.0p1 on Ubuntu 9.10.

Thank you,

Erin

The em I'm using from page 10 is below:

Stepper ODEStepper( ODE_1 )
   {
           # no property
   }
   System System( / )
   {
           StepperID       ODE_1;

           Variable Variable( SIZE )
           {
                   Value   1e-18;
           }

           Variable Variable( S )
           {
                   Value   10000;
           }

           Variable Variable( P )
           {
                   Value   0;
           }

           Process MassActionFluxProcess( E )
           {
                   Name "A mass action from S to P."
                   k     1.0;

                   VariableReferenceList [ S0 :.:S -1 ]
                                         [ P0 :.:P 1 ];
           }
 }

-- 
Erin Rachael Shellman
The University of Michigan
Bioinformatics PhD Candidate
http://www.erinshellman.com
she...@um...
(937) 321.1129