[Ecell-devel] ecell-4 Ubuntu Karmic autogen problem (svn head)

[Emre T. <emr...@gm...>]

Hi folks,

I checked out ecell-4 svn revision 3607.

When I executed ./autogen.sh there is an error I got:

---------------------
Running autotools for . ... libtoolize aclocal autoheader automake autoconf 
Running autotools for libltdl ... libtoolize aclocal acinclude.m4:6405: the serial number must appear before any macro definition
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2018: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2039: AC_CACHE_CHECK is expanded from...
acinclude.m4:615: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:4815: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:2651: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:2650: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:80: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:60: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:25: AC_PROG_LIBTOOL is expanded from...
configure.ac:69: the top level
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:660: AC_LIBTOOL_LINKER_OPTION is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:2732: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:2731: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:1787: _LT_AC_TAGCONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:3899: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:3898: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:4001: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:4000: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
autoheader configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2018: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2039: AC_CACHE_CHECK is expanded from...
acinclude.m4:615: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:4815: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:2651: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:2650: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:80: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:60: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:25: AC_PROG_LIBTOOL is expanded from...
configure.ac:69: the top level
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:660: AC_LIBTOOL_LINKER_OPTION is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:2732: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:2731: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:1787: _LT_AC_TAGCONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:3899: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:3898: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:4001: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:4000: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
automake configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2018: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2039: AC_CACHE_CHECK is expanded from...
acinclude.m4:615: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:4815: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:2651: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:2650: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:80: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:60: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:25: AC_PROG_LIBTOOL is expanded from...
configure.ac:69: the top level
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:660: AC_LIBTOOL_LINKER_OPTION is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:2732: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:2731: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:1787: _LT_AC_TAGCONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:3899: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:3898: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:4001: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:4000: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
autoconf configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2018: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2039: AC_CACHE_CHECK is expanded from...
acinclude.m4:615: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:4815: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:2651: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:2650: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:80: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:60: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:25: AC_PROG_LIBTOOL is expanded from...
configure.ac:69: the top level
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:660: AC_LIBTOOL_LINKER_OPTION is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:2732: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:2731: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:1787: _LT_AC_TAGCONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:3899: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:3898: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:4001: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:4000: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
configure.ac:69: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached

Running autotools for dmtool ... libtoolize aclocal autoheader automake autoconf 
Running autotools for ecell ... libtoolize aclocal configure.ac:138: warning: macro `AM_PATH_GSL' not found in library
configure.ac:23: error: AC_SUBST: `ECELL_DIRNAME ' is not a valid shell variable name
configure.ac:23: the top level
autom4te: /usr/bin/m4 failed with exit status: 1
aclocal: autom4te failed with exit status: 1
Error processing ecell
---------------------

Any solution?

Thanks,

    emre