Menu
▾
▴
Re: [Ecell-devel] Failure compiling Ecell-3 on Ubuntu Karmic
|
From: Michele M. <mat...@eb...> - 2009-12-09 10:10:39
|
Ok sorry, my fault. For some reason git-svn bridge didn't work properly and was not fetching the last version from svn. I recreate the repo using the svn, now I can compile the 3.1 branch without any problem and installing it. Thanks for the support! Cheers, Michele. On Wed, Dec 9, 2009 at 1:40 AM, Moriyoshi Koizumi <mo...@sf...>wrote: > Seems weird. The HEAD is 3606 so it is most likely that you haven't > got your local repository up-to-date. > > -- moriyoshi > > > > On Tue, Dec 8, 2009 at 8:02 PM, Michele Mattioni <mat...@eb...> > wrote: > > Yep, > > the failure is from the svn code: > > > > mattions@triton:ecell-3.1(master)$ git svn info > > Path: . > > URL: > > http://ecell.svn.sourceforge.net/svnroot/ecell/ecell3/branches/ecell-3.1 > > Repository Root: http://ecell.svn.sourceforge.net/svnroot/ecell > > Repository UUID: f1531174-cb10-0410-9fe6-89aa7ac3eedb > > Revision: 3464 > > Node Kind: directory > > Schedule: normal > > Last Changed Author: moriyoshi > > Last Changed Rev: 3464 > > Last Changed Date: 2009-04-29 15:27:07 +0100 (Wed, 29 Apr 2009) > > > > (Using git bridge to svn...) > > > > On Tue, Dec 8, 2009 at 10:57 AM, Moriyoshi Koizumi <mo...@sf...> > > wrote: > >> > >> Hi, > >> > >> This should have been fixed at some point. Did you get this when you > >> were trying to use the svn version instead of 3.1.107? > >> > >> -- moriyoshi > >> > >> > >> > >> On Tue, Dec 8, 2009 at 7:50 PM, Michele Mattioni <mat...@eb...> > >> wrote: > >> > Hi Moriyoshi, > >> > > >> > I've managed to compile the version (1.107), commenting the > >> > Gillespie.hpp > >> > > >> > When I try to compile the code from the svn I hit a libtool problem > >> > which I > >> > don't really understand. > >> > > >> > I use the .autogen/sh > >> > ./configure > >> > make > >> > > >> > process > >> > > >> > mattions@triton:ecell-3.1(master)$ make > >> > make all-recursive > >> > make[1]: Entering directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1' > >> > Making all in libltdl > >> > make[2]: Entering directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > >> > make all-am > >> > make[3]: Entering directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > >> > /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H > >> > -I. -g -O2 -c -o ltdl.lo ltdl.c > >> > ./libtool: line 463: CDPATH: command not found > >> > ./libtool: line 1141: func_opt_split: command not found > >> > libtool: Version mismatch error. This is libtool 2.2.6 > >> > Debian-2.2.6a-4, > >> > but the > >> > libtool: definition of this LT_INIT comes from an older release. > >> > libtool: You should recreate aclocal.m4 with macros from libtool > >> > 2.2.6 > >> > Debian-2.2.6a-4 > >> > libtool: and run autoconf again. > >> > make[3]: *** [ltdl.lo] Error 63 > >> > make[3]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > >> > make[2]: *** [all] Error 2 > >> > make[2]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > >> > make[1]: *** [all-recursive] Error 1 > >> > make[1]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1' > >> > make: *** [all] Error 2 > >> > > >> > BTW, > >> > thanks for Ecell. It's awesome. > >> > > >> > On Mon, Dec 7, 2009 at 10:29 AM, Moriyoshi Koizumi < > mo...@sf...> > >> > wrote: > >> >> > >> >> Hi, > >> >> > >> >> This is due to an *inappropriate* change in the recent glibc that > >> >> defines "getc" as a preprocessor macro in place of a weak alias to > the > >> >> actual function name. You can checkout the latest source code from > >> >> the ecell's subversion repository which already includes workaround > >> >> for this problem (plus several crucial fixes). > >> >> > >> >> > >> >> > http://ecell.svn.sourceforge.net/svnroot/ecell/ecell3/branches/ecell-3.1 > >> >> > >> >> -- moriyoshi > >> >> > >> >> > >> >> > >> >> On Mon, Dec 7, 2009 at 6:50 PM, Michele Mattioni <mat...@eb... > > > >> >> wrote: > >> >> > Hello ecell-3 devs, > >> >> > > >> >> > I'm trying to compile the final version of Ecell-3 (1.107) on a > >> >> > Ubuntu > >> >> > Karmic (9.10) and unfortunaly the compilation fail: > >> >> > > >> >> > cc -fPIC -g -O2 -g -O2 -Wno-pmf-conversions -g -O2 > >> >> > -Wno-pmf-conversions > >> >> > -D_ECELL3_DM_CLASSNAME= > >> >> > GillespieProcess -I/usr/include -I../libecs -I../.. -I.. > >> >> > -I../../libltdl > >> >> > -I/usr/include/python2.6 -c GillespieProcess.cpp -o > >> >> > GillespieProcess.o > >> >> > In file included from GillespieProcess.cpp:28: > >> >> > GillespieProcess.hpp: In static member function ‘static void > >> >> > > >> >> > > GillespieProcess::initializePropertyInterface(libecs::Type2Type<TT>)’: > >> >> > GillespieProcess.hpp:59: error: ‘getc’ is not a member of > >> >> > ‘GillespieProcess’ > >> >> > GillespieProcess.hpp:59: error: ‘getc’ is not a member of > >> >> > ‘GillespieProcess’ > >> >> > dmcompile: failed to compile the specified source files: > >> >> > CompileError(DistutilsExecError("command 'cc' failed with exit > status > >> >> > 1",),) > >> >> > ecell3-dmc: ../../dmtool/dmcompile returned error status: 1 > >> >> > make[4]: *** [GillespieProcess.so] Error 1 > >> >> > make[4]: Leaving directory > >> >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell/dm' > >> >> > make[3]: *** [all-recursive] Error 1 > >> >> > make[3]: Leaving directory > >> >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell' > >> >> > make[2]: *** [all] Error 2 > >> >> > make[2]: Leaving directory > >> >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell' > >> >> > make[1]: *** [all-recursive] Error 1 > >> >> > make[1]: Leaving directory > >> >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107' > >> >> > make: *** [all] Error 2 > >> >> > > >> >> > The problem seems to be the line 59 of the > >> >> > ecell/dm/GillespieProcess.hpp > >> >> > file, which is: > >> >> > > >> >> > PROPERTYSLOT_GET_NO_LOAD_SAVE( Real, c ); > >> >> > > >> >> > Any suggestions? > >> >> > > >> >> > (Are you thinking to provide deb package for karmic? (maybe using > >> >> > launchpad... :) ) > >> >> > > >> >> > Regards, > >> >> > Michele Mattioni > >> >> > > >> >> > > >> >> > > >> >> > > ------------------------------------------------------------------------------ > >> >> > Join us December 9, 2009 for the Red Hat Virtual Experience, > >> >> > a free event focused on virtualization and cloud computing. > >> >> > Attend in-depth sessions from your desk. Your couch. Anywhere. > >> >> > http://p.sf.net/sfu/redhat-sfdev2dev > >> >> > _______________________________________________ > >> >> > Ecell-devel mailing list > >> >> > Ece...@li... > >> >> > https://lists.sourceforge.net/lists/listinfo/ecell-devel > >> >> > > >> >> > > >> > > >> > > > > > > |
