The options controlling which variables are shown in the debugger (e.g. global/local) are currently not persistent between Eclipse sessions. It would be nice if they could be. See also:
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Implemented in 0.6.25.
Note that due to lazy loading of plugins by Eclipse the options will stay disabled and unchecked until the debugger has been loaded (i.e., until the first script is launched). After that, they become enabled and their checked reflects the last state set by the user.
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