-
-
Sergi Sayols
committed
[e18dba]
first PE approximation: Rsubread doesnt drop so...
-
Sergi Sayols
committed
[b4aa6b]
add Bioconductor back-end for counting reads wh...
-
-
Sergi Sayols
committed
[ddb95a]
add AnnotationHub as a source of GTF files in t...
-
Sergi Sayols
committed
[d6a7d3]
add a demo bam file for the example in analyzeD...
-
Sergi Sayols
committed
[2eaa9a]
remove semicolons at the end of the lines; remo...
-
Sergi Sayols
committed
[2066c3]
restore accidentally removed line from getDynam...
-
Sergi Sayols
committed
[4e5b90]
change Sergi's email to match user in the bioco...
-
Sergi Sayols
committed
[85e0d9]
replace demo dataset for something picked from ...
-
-
Sergi Sayols
committed
[858b6f]
Explicitly attach dupRadar example data. The vi...
-
Sergi Sayols
committed
[d0c255]
add ENCODE data to the vignette
-
Sergi Sayols
committed
[6ffbac]
fix scale of the fitted line in duprateExpDensP...
-
Sergi Sayols
committed
[b73f72]
fix help of some functions to pass the biocCheck
-
Sergi Sayols
committed
[d786de]
fix y-axis scale in duprateExpDensPlot() to wor...
-
- Added section to explain demo data in vignette
-
- Added section on duplication rate and GC cont...
-
Sergi Sayols
committed
[986067]
add duprateExpFit R help file
-
Worked on the vignette a bit (some restructurin...
-
Added script to create pictures for manuscript ...
-
Sergi Sayols
committed
[4058d8]
add duprateExpFit function
-
Sergi Sayols
committed
[ab9f1d]
revert version number to 0.99.0
-
-
Bumped minor version number, created new tarbal...
-
Adding compiled package to repo
-
- Fixed bug in x-axis annotation of duprateExpP...
-
Sergi Sayols
committed
[17fcef]
add some parms to duprateExpDensPlot() to match...
-
Sergi Sayols
committed
[ebaa60]
add duprateExpDensPlot()
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Sergi Sayols
committed
[0c1fd0]
updated vignette
-
Sergi Sayols
committed
[9594b5]
updated vignette
-
fixed missing brackets in list() definition.
-
Adding unfinished version of script to calculat...
-
- Changed handling of command line parameters o...
-
Fixing routine to save RData file.
-
fixed wrong axis label in expressionHist() - RP...
-
- updated cmdline parsing in dupRadar.sh to Ser...
-
Changing command line parsing of script to the ...
-
Sergi Sayols
committed
[486e09]
update color palette in density2D plot in the v...
-
Sergi Sayols
committed
[0c8811]
add density2D plots to the vignette
-
Sergi Sayols
committed
[cef7aa]
analysis_gene_types.R: add duprateExpPlot of al...
-
Sergi Sayols
committed
[435129]
add example to split duprate plots by biotype
-
Sergi Sayols
committed
[e6e67d]
add dupRadar.sh example to the vignette
-
Added more comments to dupRadar.sh script.
-
Adding dupRadar.sh script to repo for easy inte...