dupRadar Activity
Quality control for PCR artefacts in RNA-Seq data
Brought to you by:
holgerklein,
nkreim
Activity for dupRadar
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dupRadar released /Using the dupRadar package.html
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Sergi Sayols committed [e18dba]
first PE approximation: Rsubread doesnt drop so...
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Sergi Sayols committed [b4aa6b]
add Bioconductor back-end for counting reads wh...
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Sergi Sayols committed [ddb95a]
add AnnotationHub as a source of GTF files in t...
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Sergi Sayols committed [d6a7d3]
add a demo bam file for the example in analyzeD...
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Sergi Sayols committed [2eaa9a]
remove semicolons at the end of the lines; remo...
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Sergi Sayols committed [2066c3]
restore accidentally removed line from getDynam...
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Sergi Sayols committed [4e5b90]
change Sergi's email to match user in the bioco...
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Sergi Sayols committed [85e0d9]
replace demo dataset for something picked from ...
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Sergi Sayols committed [858b6f]
Explicitly attach dupRadar example data. The vi...
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Sergi Sayols committed [d0c255]
add ENCODE data to the vignette
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Sergi Sayols committed [6ffbac]
fix scale of the fitted line in duprateExpDensP...
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Sergi Sayols committed [b73f72]
fix help of some functions to pass the biocCheck
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Sergi Sayols committed [d786de]
fix y-axis scale in duprateExpDensPlot() to wor...
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Holger Klein committed [fb8310]
- Added section to explain demo data in vignette
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- Added section on duplication rate and GC cont...
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Sergi Sayols committed [986067]
add duprateExpFit R help file
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Worked on the vignette a bit (some restructurin...
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Added script to create pictures for manuscript ...
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Sergi Sayols committed [4058d8]
add duprateExpFit function
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Sergi Sayols committed [ab9f1d]
revert version number to 0.99.0
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Bumped minor version number, created new tarbal...
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Adding compiled package to repo
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- Fixed bug in x-axis annotation of duprateExpP...
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Sergi Sayols committed [17fcef]
add some parms to duprateExpDensPlot() to match...
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Sergi Sayols committed [ebaa60]
add duprateExpDensPlot()
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Sergi Sayols committed [0c1fd0]
updated vignette
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Sergi Sayols committed [9594b5]
updated vignette
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fixed missing brackets in list() definition.
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Adding unfinished version of script to calculat...
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- Changed handling of command line parameters o...
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Fixing routine to save RData file.
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fixed wrong axis label in expressionHist() - RP...
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- updated cmdline parsing in dupRadar.sh to Ser...
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Changing command line parsing of script to the ...
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Sergi Sayols committed [486e09]
update color palette in density2D plot in the v...
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Sergi Sayols committed [0c8811]
add density2D plots to the vignette
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Sergi Sayols committed [cef7aa]
analysis_gene_types.R: add duprateExpPlot of al...
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Sergi Sayols committed [435129]
add example to split duprate plots by biotype
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Sergi Sayols committed [e6e67d]
add dupRadar.sh example to the vignette
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Added more comments to dupRadar.sh script.
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Adding dupRadar.sh script to repo for easy inte...
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