DSeg software

The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented for extracting object contour and refining shapes. The software is implemented in MATLAB for segmenting and tracking of cell contours from various microscopy systems.

Video instructions:
https://www.youtube.com/embed/qMbM0shkk7A?rel

Lastest updates: 20190930

DSeg: A dynamic segmentation program to extract backbone patterns for filamentous bacteria and hyphae structures,(2018).
Hanqing Zhang,Niklas Soderholm, Linda Sandblad, Krister Wiklund, Magnus Andersson*

Features

Image segmentation tool based on level-set method
Persistence length estimation
MATLAB based GUI
Analysis for both microscopy video and image data
Capable of extracting backbone patterns for filamentous bacteria and hyphae structures
Suitable for analyzing time-lapse bacteria growth data , or tracking slow moving elongated objects with shape deformations.

Project Samples

Project Activity

See All Activity >

Follow DSeg software

DSeg software Web Site

Other Useful Business Software

Auth0 B2B Essentials: SSO, MFA, and RBAC Built In

Unlimited organizations, 3 enterprise SSO connections, role-based access control, and pro MFA included. Dev and prod tenants out of the box.

Auth0's B2B Essentials plan gives you everything you need to ship secure multi-tenant apps. Unlimited orgs, enterprise SSO, RBAC, audit log streaming, and higher auth and API limits included. Add on M2M tokens, enterprise MFA, or additional SSO connections as you scale.

Rate This Project