Re: [Dpubs-content] Not Indexing

SourceForge Headquarters 1320 Columbia Street Suite 310 San Diego, CA 92101 +1 (858) 422-6466

Hi Larry,

Thanks for the reply and advice.

Meanwhile, I've tried deleting and rebuilding the index from scratch, 
but the content is still not showing up.  If anyone could help me 
figure out why, it'd be much appreciated.

Specifically, I ran ../Services/Index/cleanup_indexes.sh
         and then ran ../Services/Index/update_index.pl

It seemed to run successfully with two qualifications:
1. While building the WAIS index, it reported the following error 
three times:
Wide character in print at 
/usr/local/DPubS/Services/Index/build-indexes.pl line 1157.

but these don't seem to have been fatal errors, as it also reported:

Completed Database Build at Thu, 5 Jul 2007 08:42:23 (Total Build Time: 0:0:1)
2. The Lucene index produced a lot of errors (pasted as a p.s. below, 
in case the details might be helpful.)  The upshot is that the Lucene 
service seems not to have been enabled.

Meanwhile, the bottom line is still that the content seems to have 
been ingested, but nothing displays on the Current or Past Issues 
pages.  The name of the journal does display in the title bar, 
suggesting that there is _some_ access to the publication metadata, 
but there is no sign of the issue-level metadata.

Hopefully this is enough information for a diagnosis?  If not, please 
let me know what else would need to be known

Thanks,
Henry

PS.  This was the output following the Completed Database Build statement:
Starting Lucene
Exception in thread "main" java.lang.NoClassDefFoundError: while 
resolving class
: org.apache.lucene.server.IndexServer
    at java.lang.VMClassLoader.resolveClass(java.lang.Class) 
(/usr/lib/libgcj.so.
5.0.0)
    at java.lang.Class.initializeClass() (/usr/lib/libgcj.so.5.0.0)
    at java.lang.Class.forName(java.lang.String, boolean, 
java.lang.ClassLoader)
(/usr/lib/libgcj.so.5.0.0)
    at java.lang.Class.forName(java.lang.String) (/usr/lib/libgcj.so.5.0.0)
    at gnu.gcj.runtime.FirstThread.run() (/usr/lib/libgcj.so.5.0.0)
    at _Jv_ThreadRun(java.lang.Thread) (/usr/lib/libgcj.so.5.0.0)
    at _Jv_RunMain(java.lang.Class, byte const, int, byte const, 
boolean) (/usr/l
ib/libgcj.so.5.0.0)
    at __gcj_personality_v0 
(/usr/local/DPubS/Services/Index/java.version=1.4.2)
    at __libc_start_main (/lib/tls/libc-2.3.4.so)
    at _Jv_RegisterClasses 
(/usr/local/DPubS/Services/Index/java.version=1.4.2)
Caused by: java.lang.ClassNotFoundException: 
javax.xml.parsers.DocumentBuilderFa
ctory not found in 
[file:/usr/local/DPubS/Services/Index/Lucene/lucene-core-1.9.
1.jar, file:/usr/local/DPubS/Services/Index/Lucene/jdom.jar, 
file:/usr/local/DPu
bS/Services/Index/Lucene/luceneServer.jar, 
file:/usr/local/DPubS/Services/Index/
Lucene/jaxen-core.jar, 
file:/usr/local/DPubS/Services/Index/Lucene/jaxen-jdom.ja
r, file:/usr/local/DPubS/Services/Index/Lucene/saxpath.jar, 
file:/usr/share/java
/libgcj-3.4.6.jar, file:./, core:/]
    at java.net.URLClassLoader.findClass(java.lang.String) 
(/usr/lib/libgcj.so.5.
0.0)
    at gnu.gcj.runtime.VMClassLoader.findClass(java.lang.String) 
(/usr/lib/libgcj
.so.5.0.0)
    at java.lang.ClassLoader.loadClass(java.lang.String, boolean) 
(/usr/lib/libgc
j.so.5.0.0)
    at _Jv_FindClass(_Jv_Utf8Const, java.lang.ClassLoader) 
(/usr/lib/libgcj.so.5.
0.0)
    at java.lang.Class.forName(java.lang.String, boolean, 
java.lang.ClassLoader)
(/usr/lib/libgcj.so.5.0.0)
    at 
_Jv_BytecodeVerifier.type.compatible(_Jv_BytecodeVerifier.type&, _Jv_Bytec
odeVerifier) (/usr/lib/libgcj.so.5.0.0)
    at _Jv_BytecodeVerifier.verify_instructions_0() (/usr/lib/libgcj.so.5.0.0)
    at _Jv_VerifyMethod(_Jv_InterpMethod) (/usr/lib/libgcj.so.5.0.0)
    at _Jv_PrepareClass(java.lang.Class) (/usr/lib/libgcj.so.5.0.0)
    at _Jv_WaitForState(java.lang.Class, int) (/usr/lib/libgcj.so.5.0.0)
    at java.lang.VMClassLoader.linkClass0(java.lang.Class) 
(/usr/lib/libgcj.so.5.
0.0)
    at java.lang.VMClassLoader.resolveClass(java.lang.Class) 
(/usr/lib/libgcj.so.
5.0.0)
    ...9 more
IndexServer error : Operation not allowed
Exception in thread "main" java.lang.ExceptionInInitializerError
*** Got java.lang.NoClassDefFoundError: gnu.gcj.runtime.NameFinder 
while trying
to print stack trace.

At 11:36 AM 7/3/2007, Larry Wentzel wrote:
>Henry,
>
>I believe we ran into a similar problem here at Penn State.  Issues 
>that loaded successfully and went into the repository didn't show up 
>anywhere.  There's a (recent? had to be, never had this problem 
>before) bug in the indexing service which fails to update the index 
>after a certain point.  I don't know the actual details, not being a 
>developer or programmer myself.  The only way we got around it was 
>to delete the index and rebuild it from scratch, which takes a bit 
>of time (ymmv).
>
>Cornell fixed this problem in an nigh-ready-for-primetime release 
>which should come out this week or next.  Watch the SourceForge site 
>for updates.
>
>--Larry Wentzel
>--Digital Preservation Coordinator
>--Penn State Libraries
>
>Henry Griffy wrote:
>>Hi All,
>>
>>I've reached another impasse and hope that y'all might once again help.
>>
>>The situation is this:
>>    * I've prepared the xml for the latest issue of our journal, 
>> FTP'd it to the server, and run the DPubs_Importer.pl script with no errors.
>>    * I've run the Index/update_index.pl script with no errors 
>> (neither reported nor in the <2007-07-04-15-00-update.log-errors> file)
>>    * I've restarted the Apache server, again with no reported errors.
>>However, when I go to look at the site via the UI service, no 
>>contents appear for either the current or past pages.  (And I'm 
>>using the demo.ph User Interface files.)  Further, when I look 
>>through the folders in the Index directory, I see no trace of our 
>>journal.  The zindex-data/bibs folder doesn't contain a sub-folder 
>>for our authority, and the log in the zupdate-staging/update-logs/ 
>>folder reports that it "Indexed 0 new bibliographic records," as do 
>>all the previous logs for times I've run the script.
>>
>>I thought the problem might be that I'm trying to upload the 
>>content in html format, so I converted one of the files to pdf, 
>>added a reference to that version of the file in the issue's xml 
>>file, and went back through the process.  Still nothing.
>>
>>Any ideas about where I might be going wrong / what I might be leaving out?
>>
>>Thanks,
>>Henry
>>
>>Henry Griffy, Program Coordinator
>>Documentation and Training Unit
>>Scholarly Resources Integration Department
>>Technical Services Division
>>The Ohio State University Libraries - Ackerman Road
>>600 Ackerman Rd., Rm. 5839, Columbus, OH 43202
>>E-mail: <mailto:gri...@os...>gri...@os...
>>Ph: 614-247-4663; Fax: 614-292-2015
>>
>>
>>
>>
>>-------------------------------------------------------------------------
>>This SF.net email is sponsored by DB2 Express
>>Download DB2 Express C - the FREE version of DB2 express and take
>>control of your XML. No limits. Just data. Click to get it now.
>><http://sourceforge.net/powerbar/db2/>http://sourceforge.net/powerbar/db2/
>>
>>
>>
>>_______________________________________________
>>Dpubs-content mailing list
>><mailto:Dpu...@li...>Dpu...@li...
>>https://lists.sourceforge.net/lists/listinfo/dpubs-content
>>
>
>
>----------
>
><https://antispam.osu.edu/b.php?c=s&i=354901194&m=69e86cf44d88>Spam
><https://antispam.osu.edu/b.php?c=n&i=354901194&m=69e86cf44d88>Not spam
><https://antispam.osu.edu/b.php?c=f&i=354901194&m=69e86cf44d88>Forget 
>previous vote

Henry Griffy, Program Coordinator
Documentation and Training Unit
Scholarly Resources Integration Department
Technical Services Division
The Ohio State University Libraries - Ackerman Road
600 Ackerman Rd., Rm. 5839, Columbus, OH 43202
E-mail: <mailto:gri...@os...>gri...@os...
Ph: 614-247-4663; Fax: 614-292-2015  