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File Date Author Commit
 release 2010-01-11 duncanpbrown [r1] Initial Version
 Alpha.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Alpha.h 2010-01-11 duncanpbrown [r1] Initial Version
 Blosum.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Cmd.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 CompareSeqs.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Cons.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DPCluster.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DPCluster.h 2010-01-11 duncanpbrown [r1] Initial Version
 DataBuffer.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DataBuffer.h 2010-01-11 duncanpbrown [r1] Initial Version
 DirMix.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DirMix.h 2010-01-11 duncanpbrown [r1] Initial Version
 DoDPCluster.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DoDPClusterDahl.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 DoSubfamLL.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 ExecCommandLine.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 ExtractCore.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Fasta.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 GapInfo.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Globals.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 GlobalsLinux.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 GlobalsWin32.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 IntMath.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 IntMath.h 2010-01-11 duncanpbrown [r1] Initial Version
 LnGamma.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 LogNormalize.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 LogProbCounts.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 MSA.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 MSA.h 2010-01-11 duncanpbrown [r1] Initial Version
 MSAFromPairMap.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 MSAGetPairMap.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 MSF.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Makefile 2010-01-11 duncanpbrown [r1] Initial Version
 MatchPriors.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 QuickSort.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 SAMRegFromFile.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Seq.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Seq.h 2010-01-11 duncanpbrown [r1] Initial Version
 SeqVect.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 SeqVect.h 2010-01-11 duncanpbrown [r1] Initial Version
 Serialization.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 Serialization.h 2010-01-11 duncanpbrown [r1] Initial Version
 SetGlobalFlags.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 SetGlobalOptions.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 SetNewHandler.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 StartStop.h 2010-01-11 duncanpbrown [r1] Initial Version
 Subfam.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 TextFile.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 TextFile.h 2010-01-11 duncanpbrown [r1] Initial Version
 Timing.h 2010-01-11 duncanpbrown [r1] Initial Version
 TransPrior.h 2010-01-11 duncanpbrown [r1] Initial Version
 TransPriors.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 lobster.h 2010-01-11 duncanpbrown [r1] Initial Version
 main.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 mt19937ar.cpp 2010-01-11 duncanpbrown [r1] Initial Version
 unixio.h 2010-01-11 duncanpbrown [r1] Initial Version