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I have just released version 1.6.1 of doxygen.
Sources and binaries for Windows, Mac OS X 10.5, and Linux/i386
are available from http://www.doxygen.org/download.html#latestsrc
The focus of this release is to fix some problems found in version 1.6.0.
For details on what has been fixed see: http://www.doxygen.org/changelog.html
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