[Dmtcp-forum] Ckpt/Restart of anonymous shared memory not supported

[Madan S. T. <MTi...@lb...>]

Hi,

I am currently testing the checkpoint-restart feature using DMTCP with
CP2K, a software package used for quantum chemistry and solid-state physics
(https://github.com/cp2k/cp2k).
However, I encountered an error during the process. Do you have any
suggestions on how to configure it properly? Your help would be much
appreciated.

Best regards,
Madan

[0;33m[2024-01-29T22:56:28.264, 41000, 41003, Warning] at
fileconnlist.cpp:457 in prepareShmList; REASON='JWARNING(false) failed'
     area.name = /dev/zero (deleted)
Message: Ckpt/Restart of anonymous shared memory not supported.
slurmstepd: error: *** JOB 21040868 ON nid005128 CANCELLED AT
2024-01-29T23:00:43 DUE TO TIME LIMIT ***
[0;31m[2024-01-29T23:05:28.446, 41000, 41003, Error] at
fileconnection.cpp:340 in refill;
REASON='JASSERT(jalib::Filesystem::FileExists(_path)) failed'
     _path = /tmp/.libxsmm.74748
Message: File not found.
    cp2k.psmp: Terminating...
    Backtrace:
        1 _ZN16jassert_internal7JAssertD2Ev in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18738c4
        2 _ZN5dmtcp14FileConnection6refillEb in
/usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f1911c4e
        3 _ZN5dmtcp14ConnectionList6refillEb in
/usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f190377a
        4 _Z28dmtcp_FileConnList_EventHook11eDmtcpEventP17_DmtcpEventData_t
in /usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f191ea52
        5
_ZN5dmtcp13PluginManager9eventHookE11eDmtcpEventP17_DmtcpEventData_t in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f183e45a
        6 _ZN5dmtcp11DmtcpWorker11postRestartEd in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f1833568
        7 _ZN5dmtcp10ThreadList18waitForAllRestoredEP6Thread in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f1844a7d
        8  in /usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18462e7
        9  in /usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18488de
        10  in /lib/x86_64-linux-gnu/libc.so.6 0x7fe4ecc6cb43
        11  in /lib/x86_64-linux-gnu/libc.so.6 0x7fe4eccfea00

[0m

-- 
Madan K Sharma Timalsina, PhD
NESAP Fellow (NERSC)
-------------------------------------------------------
Lawrence Berkeley National Laboratory
1 Cyclotron Road
Mail Stop: 59R4010A
Berkeley, CA 94720 US