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[DL-Learner SVN] SF.net SVN: dl-learner:[4003] trunk
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From: <dc...@us...> - 2013-06-18 15:15:01
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Revision: 4003
http://sourceforge.net/p/dl-learner/code/4003
Author: dcherix
Date: 2013-06-18 15:14:54 +0000 (Tue, 18 Jun 2013)
Log Message:
-----------
Added examples for the sparqr webapp
Modified Paths:
--------------
trunk/components-core/src/main/java/org/dllearner/kb/sparql/simple/ABoxQueryGenerator.java
trunk/examples/sparql/AristotlePosNeg.conf
trunk/interfaces/pom.xml
trunk/interfaces/src/main/java/org/dllearner/server/Rest.java
Added Paths:
-----------
trunk/examples/sparqr/
trunk/examples/sparqr/AristotlePosNeg.conf
trunk/examples/sparqr/StGeorge.conf
Modified: trunk/components-core/src/main/java/org/dllearner/kb/sparql/simple/ABoxQueryGenerator.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/kb/sparql/simple/ABoxQueryGenerator.java 2013-06-17 10:35:31 UTC (rev 4002)
+++ trunk/components-core/src/main/java/org/dllearner/kb/sparql/simple/ABoxQueryGenerator.java 2013-06-18 15:14:54 UTC (rev 4003)
@@ -26,7 +26,7 @@
if (aboxfilter != null) {
builder.append(aboxfilter);
}
- builder.append("FILTER (! (?p=rdf:type))");
+ builder.append("FILTER ( (?p!=rdf:type))");
builder.append("}");
monABoxQueryGeneration.stop();
return builder.toString();
Modified: trunk/examples/sparql/AristotlePosNeg.conf
===================================================================
--- trunk/examples/sparql/AristotlePosNeg.conf 2013-06-17 10:35:31 UTC (rev 4002)
+++ trunk/examples/sparql/AristotlePosNeg.conf 2013-06-18 15:14:54 UTC (rev 4003)
@@ -11,7 +11,7 @@
// SPARQL options
sparql.type = "SPARQL endpoint fragment"
-sparql.url = "http://dbpedia.openlinksw.com:8890/sparql"
+sparql.url = "http://dbpedia.org/sparql"
sparql.defaultGraphURIs = {"http://dbpedia.org"}
sparql.recursionDepth = 1
//TODOREFACTOR check if predefinedFilter works at all
@@ -29,8 +29,8 @@
reasoner.type = "fast instance checker"
reasoner.sources = {sparql}
+reasoner.forAllSemantics="SomeOnly"
-
// we want to learn from positive and negative examples
lp.type = "posNegStandard"
lp.positiveExamples = {
Added: trunk/examples/sparqr/AristotlePosNeg.conf
===================================================================
--- trunk/examples/sparqr/AristotlePosNeg.conf (rev 0)
+++ trunk/examples/sparqr/AristotlePosNeg.conf 2013-06-18 15:14:54 UTC (rev 4003)
@@ -0,0 +1,107 @@
+/**
+ * Some people from Greece.
+ * Note: DBpedia is always subject to change, solutions will change over time
+
+ * Possible Solution:
+ * Theorist OR (Mathematician AND Physicist)
+ */
+
+
+/******************
+ * SPARQL options *
+ ******************/
+// sparql component to use
+sparql.type = "sparqls"
+// endpoint
+sparql.endpointURL = "http://dbpedia.org/sparql"
+// default graph uri for the SPARQL queries
+sparql.defaultGraphURI = "http://dbpedia.org"
+// recursion depth
+sparql.recursionDepth = 2
+// url(s) of the schema definition of the used ontologies.
+sparql.ontologySchemaUrls = {"http://downloads.dbpedia.org/3.6/dbpedia_3.6.owl" }
+
+//SPARQL Filters for the instances. Those filters excludes all literals, and all Catergory instances. Thereto a instance must begin with http://dbpedia.org/Resource
+sparql.aboxfilter = "FILTER (
+!isLiteral(?o) &&
+!regex(str(?p), 'http://dbpedia.org/property/website') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikipage') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikiPageUsesTemplate') &&
+!regex(str(?p), 'http://dbpedia.org/property/reference') &&
+!regex(str(?p), 'http://www.w3.org/2004/02/skos/core') &&
+!regex(str(?p), 'http://www.w3.org/2002/07/owl#sameAs') &&
+!regex(str(?p), 'http://xmlns.com/foaf/0.1/') &&
+!regex(str(?p), 'http://dbpedia.org/property/wordnet_type') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikilink') &&
+regex(str(?o), '^http://dbpedia.org/resource/') &&
+!regex(str(?o),'^http://dbpedia.org/resource/Category:')
+) "
+// SPARQL Filters for the classes. With this filter only class in the dbpedia ontology are accepted and at example not from YAGO
+sparql.tboxfilter = "FILTER ( !regex(str(?class), '^http://upload.wikimedia.org/wikipedia') &&
+!regex(str(?class), '^http://dbpedia.org/resource/Template') &&
+!regex(str(?class), '^http://dbpedia.org/resource/Category:') &&
+!regex(str(?class), '^http://umbel.org/umbel/')
+ ) . "
+
+//A list of the start instances
+sparql.instances = {
+"http://dbpedia.org/resource/Democritus",
+"http://dbpedia.org/resource/Zeno_of_Elea",
+"http://dbpedia.org/resource/Plato",
+"http://dbpedia.org/resource/Socrates",
+"http://dbpedia.org/resource/Archytas",
+"http://dbpedia.org/resource/Pythagoras",
+"http://dbpedia.org/resource/Archimedes",
+"http://dbpedia.org/resource/EuClid",
+"http://dbpedia.org/resource/Heraclitus"
+}
+
+/********************
+ * Reasoner options *
+ ********************/
+reasoner.type = "fast instance checker"
+reasoner.sources = {sparql}
+reasoner.forAllSemantics="Standard"
+
+/*****************************
+ * Learning problems options *
+ *****************************/
+// we want to learn from positive and negative examples
+lp.type = "posNegStandard"
+
+//the positives examples
+lp.positiveExamples = {
+"http://dbpedia.org/resource/Archytas",
+"http://dbpedia.org/resource/Pythagoras",
+"http://dbpedia.org/resource/Archimedes",
+"http://dbpedia.org/resource/Thales"
+}
+
+//the negatives examples
+lp.negativeExamples = {
+"http://dbpedia.org/resource/Democritus",
+"http://dbpedia.org/resource/Zeno_of_Elea",
+"http://dbpedia.org/resource/Plato",
+"http://dbpedia.org/resource/Socrates",
+"http://dbpedia.org/resource/EuClid",
+"http://dbpedia.org/resource/Heraclitus"
+}
+lp.reasoner = reasoner
+
+/*******************************
+ * refinement operator options *
+ *******************************/
+
+// create a refinement operator and configure it
+op.type = "rho"
+op.useHasValueConstructor = true
+op.reasoner = reasoner
+
+/***************************
+ * learn algorithm options *
+ ***************************/
+// we use the OCEL algorithm
+alg.type = "ocel"
+alg.reasoner = reasoner
+
+
Added: trunk/examples/sparqr/StGeorge.conf
===================================================================
--- trunk/examples/sparqr/StGeorge.conf (rev 0)
+++ trunk/examples/sparqr/StGeorge.conf 2013-06-18 15:14:54 UTC (rev 4003)
@@ -0,0 +1,151 @@
+
+
+/******************
+ * SPARQL options *
+ ******************/
+// sparql component to use
+sparql.type = "sparqls"
+// endpoint
+sparql.endpointURL = "http://dbpedia.org/sparql"
+// default graph uri for the SPARQL queries
+sparql.defaultGraphURI = "http://dbpedia.org"
+// recursion depth
+sparql.recursionDepth = 2
+// url(s) of the schema definition of the used ontologies.
+sparql.ontologySchemaUrls = {"http://downloads.dbpedia.org/3.6/dbpedia_3.6.owl" }
+
+sparql.aboxfilter = "FILTER (
+!isLiteral(?o) &&
+!regex(str(?p), 'http://dbpedia.org/property/website') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikipage') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikiPageUsesTemplate') &&
+!regex(str(?p), 'http://dbpedia.org/property/reference') &&
+!regex(str(?p), 'http://www.w3.org/2004/02/skos/core') &&
+!regex(str(?p), 'http://www.w3.org/2002/07/owl#sameAs') &&
+!regex(str(?p), 'http://xmlns.com/foaf/0.1/') &&
+!regex(str(?p), 'http://dbpedia.org/property/wordnet_type') &&
+!regex(str(?p), 'http://dbpedia.org/property/wikilink') &&
+regex(str(?o), '^http://dbpedia.org/resource/')
+) "
+
+sparql.tboxfilter = "FILTER ( !regex(str(?class), '^http://upload.wikimedia.org/wikipedia') &&
+!regex(str(?class), '^http://dbpedia.org/resource/Template') &&
+!regex(str(?class), '^http://dbpedia.org/resource/Category:') &&
+!regex(str(?class), '^http://umbel.org/umbel/') &&
+!regex(str(?class), '^http://dbpedia.org/class/yago')
+ ) . "
+
+//A list of the start instances
+sparql.instances = {"http://dbpedia.org/resource/Gorden_Tallis",
+"http://dbpedia.org/resource/Matthew_Elliott_(rugby_league)",
+"http://dbpedia.org/resource/Graeme_Bradley",
+"http://dbpedia.org/resource/Elton_Rasmussen",
+"http://dbpedia.org/resource/Noel_Goldthorpe",
+"http://dbpedia.org/resource/Shane_Kenward",
+"http://dbpedia.org/resource/Anthony_Mundine",
+"http://dbpedia.org/resource/Steve_Edge_(rugby_league)",
+"http://dbpedia.org/resource/Robbie_Simpson_(rugby_league)",
+"http://dbpedia.org/resource/Ivan_Henjak",
+"http://dbpedia.org/resource/Dick_Huddart",
+"http://dbpedia.org/resource/Mark_Coyne_(rugby_league)",
+"http://dbpedia.org/resource/Henry_Tatana",
+"http://dbpedia.org/resource/Col_Maxwell",
+"http://dbpedia.org/resource/Wayne_Bartrim",
+"http://dbpedia.org/resource/Mitch_Brennan",
+"http://dbpedia.org/resource/Steve_Morris",
+"http://dbpedia.org/resource/Brian_Johnston_(rugby_league)",
+"http://dbpedia.org/resource/Herb_Narvo",
+"http://dbpedia.org/resource/Chris_Johns_(rugby_league)",
+"http://dbpedia.org/resource/Martin_Offiah",
+"http://dbpedia.org/resource/Gorden_Tallis",
+"http://dbpedia.org/resource/Lance_Thompson",
+"http://dbpedia.org/resource/Rod_Reddy",
+"http://dbpedia.org/resource/Wally_Fullerton_Smith",
+"http://dbpedia.org/resource/Neil_Tierney",
+"http://dbpedia.org/resource/Daniel_Wagon",
+"http://dbpedia.org/resource/Ian_Herron",
+"http://dbpedia.org/resource/Eric_Grothe%2C_Jr.",
+"http://dbpedia.org/resource/Michael_Ennis",
+"http://dbpedia.org/resource/Michael_Buettner",
+"http://dbpedia.org/resource/Chris_Mortimer",
+"http://dbpedia.org/resource/Feleti_Mateo",
+"http://dbpedia.org/resource/John_Barclay_(cricketer)",
+"http://dbpedia.org/resource/Lewis_Collins_(aviator)",
+"http://dbpedia.org/resource/Johann_Mohr",
+"http://dbpedia.org/resource/John_Williams_(VC)",
+"http://dbpedia.org/resource/Paula_Pequeno",
+"http://dbpedia.org/resource/Ben_Ross",
+"http://dbpedia.org/resource/Colin_Forsyth",
+"http://dbpedia.org/resource/Brian_Davies_(rugby_league)",
+"http://dbpedia.org/resource/Harry_Taylor_(rugby_league)",
+"http://dbpedia.org/resource/Wayne_Proctor_(rugby_league)"
+ }
+
+reasoner.type = "fast instance checker"
+reasoner.sources = {sparql}
+
+lp.type = "posNegStandard"
+
+lp.positiveExamples = {
+"http://dbpedia.org/resource/Matthew_Elliott_(rugby_league)",
+"http://dbpedia.org/resource/Graeme_Bradley",
+"http://dbpedia.org/resource/Elton_Rasmussen",
+"http://dbpedia.org/resource/Noel_Goldthorpe",
+"http://dbpedia.org/resource/Shane_Kenward",
+"http://dbpedia.org/resource/Anthony_Mundine",
+"http://dbpedia.org/resource/Steve_Edge_(rugby_league)",
+"http://dbpedia.org/resource/Robbie_Simpson_(rugby_league)",
+"http://dbpedia.org/resource/Ivan_Henjak",
+"http://dbpedia.org/resource/Dick_Huddart",
+"http://dbpedia.org/resource/Mark_Coyne_(rugby_league)",
+"http://dbpedia.org/resource/Henry_Tatana",
+"http://dbpedia.org/resource/Col_Maxwell",
+"http://dbpedia.org/resource/Wayne_Bartrim",
+"http://dbpedia.org/resource/Mitch_Brennan",
+"http://dbpedia.org/resource/Steve_Morris",
+"http://dbpedia.org/resource/Brian_Johnston_(rugby_league)",
+"http://dbpedia.org/resource/Herb_Narvo",
+"http://dbpedia.org/resource/Chris_Johns_(rugby_league)",
+"http://dbpedia.org/resource/Martin_Offiah",
+"http://dbpedia.org/resource/Gorden_Tallis",
+"http://dbpedia.org/resource/Lance_Thompson",
+"http://dbpedia.org/resource/Rod_Reddy",
+"http://dbpedia.org/resource/Wally_Fullerton_Smith",
+"http://dbpedia.org/resource/Neil_Tierney"
+}
+
+lp.negativeExamples = {
+"http://dbpedia.org/resource/Daniel_Wagon",
+"http://dbpedia.org/resource/Ian_Herron",
+"http://dbpedia.org/resource/Eric_Grothe%2C_Jr.",
+"http://dbpedia.org/resource/Michael_Ennis",
+"http://dbpedia.org/resource/Michael_Buettner",
+"http://dbpedia.org/resource/Chris_Mortimer",
+"http://dbpedia.org/resource/Feleti_Mateo",
+"http://dbpedia.org/resource/John_Barclay_(cricketer)",
+"http://dbpedia.org/resource/Lewis_Collins_(aviator)",
+"http://dbpedia.org/resource/Johann_Mohr",
+"http://dbpedia.org/resource/John_Williams_(VC)",
+"http://dbpedia.org/resource/Paula_Pequeno",
+"http://dbpedia.org/resource/Ben_Ross",
+"http://dbpedia.org/resource/Colin_Forsyth",
+"http://dbpedia.org/resource/Brian_Davies_(rugby_league)",
+"http://dbpedia.org/resource/Harry_Taylor_(rugby_league)",
+"http://dbpedia.org/resource/Wayne_Proctor_(rugby_league)"
+ }
+
+lp.reasoner = reasoner
+
+
+op.type = "rho"
+op.useNegation = false
+op.useAllConstructor = false
+op.useCardinalityRestrictions = false
+op.useHasValueConstructor = true
+op.reasoner = reasoner
+
+
+alg.type = "ocel"
+alg.reasoner = reasoner
+alg.maxExecutionTimeInSeconds = 30
+alg.noisePercentage = 10.0
Property changes on: trunk/examples/sparqr/StGeorge.conf
___________________________________________________________________
Added: svn:executable
## -0,0 +1 ##
+*
\ No newline at end of property
Modified: trunk/interfaces/pom.xml
===================================================================
--- trunk/interfaces/pom.xml 2013-06-17 10:35:31 UTC (rev 4002)
+++ trunk/interfaces/pom.xml 2013-06-18 15:14:54 UTC (rev 4003)
@@ -356,7 +356,7 @@
<build>
<finalName>dl-learner</finalName>
<plugins>
- <plugin>
+ <!-- <plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>1.6</version>
@@ -376,7 +376,7 @@
</configuration>
</execution>
</executions>
- </plugin>
+ </plugin>-->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>xmlbeans-maven-plugin</artifactId>
@@ -521,8 +521,8 @@
<!-- Exclude Project-D from Project-B -->
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
- <exclusion>
- <groupId>net.sourceforge</groupId>
+ <exclusion>
+ <groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi</artifactId>
</exclusion>
</exclusions>
Modified: trunk/interfaces/src/main/java/org/dllearner/server/Rest.java
===================================================================
--- trunk/interfaces/src/main/java/org/dllearner/server/Rest.java 2013-06-17 10:35:31 UTC (rev 4002)
+++ trunk/interfaces/src/main/java/org/dllearner/server/Rest.java 2013-06-18 15:14:54 UTC (rev 4003)
@@ -94,7 +94,7 @@
learningResult.put("manchester", ed.getDescription().toManchesterSyntaxString(null, null));
learningResult.put("kbsyntax", ed.getDescription().toKBSyntaxString());
// learningResult.put("sparql", sqd.getSparqlQuery(ed.getDescription()));
- learningResult.put("sparql", sparqlConv.asQuery("?subject", OWLAPIConverter.getOWLAPIDescription(ed.getDescription())));
+ learningResult.put("sparql", " "+ sparqlConv.asQuery("?subject", OWLAPIConverter.getOWLAPIDescription(ed.getDescription()))+" ");
learningResult.put("accuracy", ed.getAccuracy());
learningResult.put("truePositives", EvaluatedDescriptionPosNeg.getJSONArray(ed.getCoveredPositives()));
learningResult.put("falsePositives", EvaluatedDescriptionPosNeg.getJSONArray(ed.getNotCoveredPositives()));
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