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[DL-Learner SVN] SF.net SVN: dl-learner:[3965] trunk/scripts/src/main/java/org/dllearner/ scripts/pattern/OWLAxiomPatternUsageEvaluation.java
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From: <lor...@us...> - 2013-05-09 03:51:52
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Revision: 3965
http://sourceforge.net/p/dl-learner/code/3965
Author: lorenz_b
Date: 2013-05-09 03:51:49 +0000 (Thu, 09 May 2013)
Log Message:
-----------
Refactored pattern eval.
Modified Paths:
--------------
trunk/scripts/src/main/java/org/dllearner/scripts/pattern/OWLAxiomPatternUsageEvaluation.java
Modified: trunk/scripts/src/main/java/org/dllearner/scripts/pattern/OWLAxiomPatternUsageEvaluation.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/pattern/OWLAxiomPatternUsageEvaluation.java 2013-05-08 21:16:05 UTC (rev 3964)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/pattern/OWLAxiomPatternUsageEvaluation.java 2013-05-09 03:51:49 UTC (rev 3965)
@@ -85,7 +85,6 @@
import com.hp.hpl.jena.query.Syntax;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
-import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.Statement;
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
@@ -137,44 +136,47 @@
//for each pattern
for (OWLAxiom pattern : patterns) {
- //if pattern is equivalent classes axiom, we need to get the subclass axiom where the named class is the subclass
- if(pattern.isOfType(AxiomType.EQUIVALENT_CLASSES)){
- Set<OWLSubClassOfAxiom> subClassOfAxioms = ((OWLEquivalentClassesAxiom)pattern).asOWLSubClassOfAxioms();
- for (OWLSubClassOfAxiom axiom : subClassOfAxioms) {
- if(!axiom.getSubClass().isAnonymous()){
- pattern = axiom;
- break;
+ File file = new File(axiomRenderer.render(pattern).replace(" ", "_") + "-instantiations.ttl");
+ if(!file.exists()){
+ //if pattern is equivalent classes axiom, we need to get the subclass axiom where the named class is the subclass
+ if(pattern.isOfType(AxiomType.EQUIVALENT_CLASSES)){
+ Set<OWLSubClassOfAxiom> subClassOfAxioms = ((OWLEquivalentClassesAxiom)pattern).asOWLSubClassOfAxioms();
+ for (OWLSubClassOfAxiom axiom : subClassOfAxioms) {
+ if(!axiom.getSubClass().isAnonymous()){
+ pattern = axiom;
+ break;
+ }
}
}
- }
- if(pattern.isOfType(AxiomType.SUBCLASS_OF)){
- logger.info("Processing " + pattern + "...");
- Map<OWLAxiom, Score> axioms2Score = new LinkedHashMap<OWLAxiom, Score>();
- //for each class
- int i = 1;
- for (NamedClass cls : classes) {
- logger.info("Processing " + cls + "...");
-
- Map<OWLAxiom, Score> result = evaluateUsingFragmentExtraction(pattern, cls);
- axioms2Score.putAll(result);
-
- for (Entry<OWLAxiom, Score> entry : result.entrySet()) {
- OWLAxiom axiom = entry.getKey();
- Score score = entry.getValue();
- if(score.getAccuracy() >= threshold){
- logger.info(axiom + "(" + format.format(score.getAccuracy()) + ")");
+ if(pattern.isOfType(AxiomType.SUBCLASS_OF)){
+ logger.info("Processing " + pattern + "...");
+ Map<OWLAxiom, Score> axioms2Score = new LinkedHashMap<OWLAxiom, Score>();
+ //for each class
+ int i = 1;
+ for (NamedClass cls : classes) {
+ logger.info("Processing " + cls + "...");
+
+ Map<OWLAxiom, Score> result = evaluateUsingFragmentExtraction(pattern, cls);
+ axioms2Score.putAll(result);
+
+ for (Entry<OWLAxiom, Score> entry : result.entrySet()) {
+ OWLAxiom axiom = entry.getKey();
+ Score score = entry.getValue();
+ if(score.getAccuracy() >= threshold){
+ logger.info(axiom + "(" + format.format(score.getAccuracy()) + ")");
+ }
}
+
+ //wait some time to avoid flooding of endpoint
+ try {
+ Thread.sleep(waitingTime);
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+// if(i++ == 3) break;
}
-
- //wait some time to avoid flooding of endpoint
- try {
- Thread.sleep(waitingTime);
- } catch (InterruptedException e) {
- e.printStackTrace();
- }
-// if(i++ == 3) break;
+ save(pattern, axioms2Score, file);
}
- save(pattern, axioms2Score);
}
}
}
@@ -203,28 +205,31 @@
//for each pattern
for (OWLAxiom pattern : patterns) {
- logger.info("Applying pattern " + pattern + "...");
- // if pattern is equivalent classes axiom, we need to get the
- // subclass axiom where the named class is the subclass
- Map<OWLAxiom, Score> axioms2Score = new LinkedHashMap<OWLAxiom, Score>();
- // for each class
- for (NamedClass cls : classes) {
- logger.info("...on class " + cls + "...");
- Model fragment = class2Fragment.get(cls);
- Map<OWLAxiom, Score> result = applyPattern(pattern,
- df.getOWLClass(IRI.create(cls.getName())), fragment);
- axioms2Score.putAll(result);
+ //run if not already exists a result on disk
+ File file = new File(axiomRenderer.render(pattern).replace(" ", "_") + "-instantiations.ttl");
+ if(!file.exists()){
+ logger.info("Applying pattern " + pattern + "...");
+ // if pattern is equivalent classes axiom, we need to get the
+ // subclass axiom where the named class is the subclass
+ Map<OWLAxiom, Score> axioms2Score = new LinkedHashMap<OWLAxiom, Score>();
+ // for each class
+ for (NamedClass cls : classes) {
+ logger.info("...on class " + cls + "...");
+ Model fragment = class2Fragment.get(cls);
+ Map<OWLAxiom, Score> result = applyPattern(pattern,
+ df.getOWLClass(IRI.create(cls.getName())), fragment);
+ axioms2Score.putAll(result);
- for (Entry<OWLAxiom, Score> entry : result.entrySet()) {
- OWLAxiom axiom = entry.getKey();
- Score score = entry.getValue();
- if (score.getAccuracy() >= threshold) {
- logger.info(axiom + "(" + format.format(score.getAccuracy()) + ")");
+ for (Entry<OWLAxiom, Score> entry : result.entrySet()) {
+ OWLAxiom axiom = entry.getKey();
+ Score score = entry.getValue();
+ if (score.getAccuracy() >= threshold) {
+ logger.info(axiom + "(" + format.format(score.getAccuracy()) + ")");
+ }
}
}
+ save(pattern, axioms2Score, file);
}
- save(pattern, axioms2Score);
-
}
}
@@ -695,7 +700,7 @@
return template.asQuery();
}
- private void save(OWLAxiom pattern, Map<OWLAxiom, Score> axioms2Score){
+ private void save(OWLAxiom pattern, Map<OWLAxiom, Score> axioms2Score, File file){
try {
Set<OWLAxiom> annotatedAxioms = new HashSet<OWLAxiom>();
for (Entry<OWLAxiom, Score> entry : axioms2Score.entrySet()) {
@@ -708,8 +713,7 @@
}
OWLOntologyManager man = OWLManager.createOWLOntologyManager();
OWLOntology ontology = man.createOntology(annotatedAxioms);
- String filename = axiomRenderer.render(pattern).replace(" ", "_");
- man.saveOntology(ontology, new TurtleOntologyFormat(), new FileOutputStream(filename + "-instantiations.ttl"));
+ man.saveOntology(ontology, new TurtleOntologyFormat(), new FileOutputStream(file));
} catch (OWLOntologyCreationException e) {
e.printStackTrace();
} catch (OWLOntologyStorageException e) {
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