[DL-Learner SVN] SF.net SVN: dl-learner:[3949] trunk

[<lor...@us...>]

Revision: 3949
          http://sourceforge.net/p/dl-learner/code/3949
Author:   lorenz_b
Date:     2013-05-04 11:27:51 +0000 (Sat, 04 May 2013)
Log Message:
-----------
Added Oxford Ontologies repository

Modified Paths:
--------------
    trunk/scripts/src/main/java/org/dllearner/scripts/OWLAxiomPatternDetectionEvaluation.java

Added Paths:
-----------
    trunk/components-core/src/main/java/org/dllearner/kb/repository/oxford/
    trunk/components-core/src/main/java/org/dllearner/kb/repository/oxford/OxfordRepository.java

Added: trunk/components-core/src/main/java/org/dllearner/kb/repository/oxford/OxfordRepository.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/kb/repository/oxford/OxfordRepository.java	                        (rev 0)
+++ trunk/components-core/src/main/java/org/dllearner/kb/repository/oxford/OxfordRepository.java	2013-05-04 11:27:51 UTC (rev 3949)
@@ -0,0 +1,125 @@
+package org.dllearner.kb.repository.oxford;
+
+import java.net.URI;
+import java.text.DecimalFormat;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Collections;
+import java.util.List;
+
+import org.apache.log4j.Logger;
+import org.dllearner.kb.repository.OntologyRepository;
+import org.dllearner.kb.repository.OntologyRepositoryEntry;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.util.OntologyIRIShortFormProvider;
+
+public class OxfordRepository implements OntologyRepository{
+	
+	private static final Logger log = Logger.getLogger(OxfordRepository.class);
+	
+	private final String repositoryName = "Oxford";
+
+    private final URI repositoryLocation = URI.create("http://www.cs.ox.ac.uk/isg/ontologies/UID/");
+
+    private List<RepositoryEntry> entries;
+
+    int numberOfEntries = 793;
+    
+    DecimalFormat df = new DecimalFormat("00000");
+
+
+    public OxfordRepository() {
+        entries = new ArrayList<RepositoryEntry>();
+    }
+
+    @Override
+    public void initialize() {
+    	refresh();
+    }
+
+
+    public String getName() {
+        return repositoryName;
+    }
+
+
+    public String getLocation() {
+        return repositoryLocation.toString();
+    }
+
+
+    public void refresh() {
+        fillRepository();
+    }
+
+
+    public Collection<OntologyRepositoryEntry> getEntries() {
+        List<OntologyRepositoryEntry> ret = new ArrayList<OntologyRepositoryEntry>();
+        ret.addAll(entries);
+        return ret;
+    }
+
+
+    public List<Object> getMetaDataKeys() {
+        return Collections.emptyList();
+    }
+
+
+    public void dispose() throws Exception {
+    }
+
+    /////////////////////////////////////////////////////////////////////////////////////////////////
+    //
+    //  Implementation details
+
+
+    private void fillRepository() {
+    	entries.clear();
+        for(int i = 1; i <= numberOfEntries; i++){
+        	entries.add(new RepositoryEntry(URI.create(repositoryLocation + df.format(i) + ".owl")));
+        }
+        log.info("Loaded " + entries.size() + " ontology entries from Oxford.");
+    }
+
+    private class RepositoryEntry implements OntologyRepositoryEntry {
+
+        private String shortName;
+
+        private URI ontologyURI;
+
+        private URI physicalURI;
+
+        public RepositoryEntry(URI ontologyIRI) {
+            this.ontologyURI = ontologyIRI;System.out.println(ontologyIRI);
+            OntologyIRIShortFormProvider sfp = new OntologyIRIShortFormProvider();
+            shortName = sfp.getShortForm(IRI.create(ontologyIRI));
+            physicalURI = ontologyIRI;
+        }
+
+
+        public String getOntologyShortName() {
+            return shortName;
+        }
+
+
+        public URI getOntologyURI() {
+            return ontologyURI;
+        }
+
+
+        public URI getPhysicalURI() {
+            return physicalURI;
+        }
+
+
+        public String getMetaData(Object key) {
+            return null;
+        }
+
+    }
+    
+    public static void main(String[] args) throws Exception {
+		new OxfordRepository().fillRepository();
+	}
+
+}

Modified: trunk/scripts/src/main/java/org/dllearner/scripts/OWLAxiomPatternDetectionEvaluation.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/OWLAxiomPatternDetectionEvaluation.java	2013-05-04 11:13:37 UTC (rev 3948)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/OWLAxiomPatternDetectionEvaluation.java	2013-05-04 11:27:51 UTC (rev 3949)
@@ -21,6 +21,7 @@
 import org.dllearner.algorithms.pattern.OWLAxiomPatternFinder;
 import org.dllearner.kb.repository.OntologyRepository;
 import org.dllearner.kb.repository.bioportal.BioPortalRepository;
+import org.dllearner.kb.repository.oxford.OxfordRepository;
 import org.dllearner.kb.repository.tones.TONESRepository;
 import org.ini4j.IniPreferences;
 import org.ini4j.InvalidFileFormatException;
@@ -375,7 +376,7 @@
 			analyzeRepositories = Boolean.parseBoolean(args[0]);
 		}
 		new OWLAxiomPatternDetectionEvaluation().run(analyzeRepositories, Arrays.asList(
-				new TONESRepository(), new BioPortalRepository()));
+				new TONESRepository(), new BioPortalRepository(), new OxfordRepository()));
 	}
 	
 

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