[DL-Learner SVN] SF.net SVN: dl-learner:[3936] trunk/components-core/src

[<lor...@us...>]

Revision: 3936
          http://sourceforge.net/p/dl-learner/code/3936
Author:   lorenz_b
Date:     2013-05-03 07:31:37 +0000 (Fri, 03 May 2013)
Log Message:
-----------
Commented tests.

Modified Paths:
--------------
    trunk/components-core/src/main/java/org/dllearner/algorithms/pattern/OWLAxiomPatternFinder.java
    trunk/components-core/src/main/java/org/dllearner/reasoning/OWLAPIReasoner.java
    trunk/components-core/src/main/java/org/dllearner/utilities/datastructures/SetManipulation.java
    trunk/components-core/src/test/java/org/dllearner/algorithms/pattern/OWLPatternDetectionTest.java

Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/pattern/OWLAxiomPatternFinder.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/pattern/OWLAxiomPatternFinder.java	2013-05-02 10:57:42 UTC (rev 3935)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/pattern/OWLAxiomPatternFinder.java	2013-05-03 07:31:37 UTC (rev 3936)
@@ -93,6 +93,19 @@
 		dataFactory = manager.getOWLDataFactory();
 		
 		initDBConnection();
+		prepare();
+	}
+	
+	public OWLAxiomPatternFinder(OntologyRepository repository, Connection conn) {
+		this.repository = repository;
+		this.conn = conn;
+		manager = OWLManager.createOWLOntologyManager();
+		dataFactory = manager.getOWLDataFactory();
+		
+		prepare();
+	}
+	
+	private void prepare(){
 		createTables();
 		try {
 			selectOntologyIdPs = conn.prepareStatement("SELECT id FROM Ontology WHERE url=?");

Modified: trunk/components-core/src/main/java/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/reasoning/OWLAPIReasoner.java	2013-05-02 10:57:42 UTC (rev 3935)
+++ trunk/components-core/src/main/java/org/dllearner/reasoning/OWLAPIReasoner.java	2013-05-03 07:31:37 UTC (rev 3936)
@@ -45,6 +45,7 @@
 import org.dllearner.core.KnowledgeSource;
 import org.dllearner.core.config.ConfigOption;
 import org.dllearner.core.owl.Axiom;
+import org.dllearner.core.owl.ClassHierarchy;
 import org.dllearner.core.owl.Constant;
 import org.dllearner.core.owl.Datatype;
 import org.dllearner.core.owl.DatatypeProperty;
@@ -59,6 +60,7 @@
 import org.dllearner.core.owl.Thing;
 import org.dllearner.core.owl.TypedConstant;
 import org.dllearner.core.owl.UntypedConstant;
+import org.dllearner.kb.OWLAPIOntology;
 import org.dllearner.kb.OWLOntologyKnowledgeSource;
 import org.dllearner.utilities.owl.ConceptComparator;
 import org.dllearner.utilities.owl.DLLearnerDescriptionConvertVisitor;
@@ -938,7 +940,11 @@
         OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
         try {
             OWLOntology ontology = manager.loadOntologyFromOntologyDocument(IRI.create(iri));
-            ontology = manager.loadOntologyFromOntologyDocument(new File("../test/phaenotype/mp-equivalence-axioms-subq.owl"));
+            KnowledgeSource ks = new OWLAPIOntology(ontology);
+            OWLAPIReasoner reasoner = new OWLAPIReasoner(ks);
+            reasoner.init();
+            ClassHierarchy classHierarchy = reasoner.getClassHierarchy();
+            System.out.println(classHierarchy.toString(false));
 //            new PelletReasonerFactory().createReasoner(ontology);
             System.out.println("Reasoner loaded succesfully.");
             CelReasoner r = new CelReasoner(ontology);

Modified: trunk/components-core/src/main/java/org/dllearner/utilities/datastructures/SetManipulation.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/utilities/datastructures/SetManipulation.java	2013-05-02 10:57:42 UTC (rev 3935)
+++ trunk/components-core/src/main/java/org/dllearner/utilities/datastructures/SetManipulation.java	2013-05-03 07:31:37 UTC (rev 3936)
@@ -19,6 +19,7 @@
 
 package org.dllearner.utilities.datastructures;
 
+import java.util.Collection;
 import java.util.List;
 import java.util.Random;
 import java.util.SortedSet;
@@ -160,6 +161,14 @@
 		return ret;
 	}
 	
+	public static SortedSet<Individual> stringToInd(Collection<String> individualsAsString) {
+		SortedSet<Individual> ret = new TreeSet<Individual>();
+		for (String ind : individualsAsString) {
+			ret.add(new Individual(ind));
+		}
+		return ret;
+	}
+	
 	public static SortedSet<String>indToString(SortedSet<Individual> set) {
 		SortedSet<String> ret = new TreeSet<String>();
 		for (Individual ind : set) {

Modified: trunk/components-core/src/test/java/org/dllearner/algorithms/pattern/OWLPatternDetectionTest.java
===================================================================
--- trunk/components-core/src/test/java/org/dllearner/algorithms/pattern/OWLPatternDetectionTest.java	2013-05-02 10:57:42 UTC (rev 3935)
+++ trunk/components-core/src/test/java/org/dllearner/algorithms/pattern/OWLPatternDetectionTest.java	2013-05-03 07:31:37 UTC (rev 3936)
@@ -17,7 +17,7 @@
 		ToStringRenderer.getInstance().setRenderer(new DLSyntaxObjectRenderer());
 	}
 
-	@Test
+//	@Test
 	public void testTONESRepository(){
 		OntologyRepository repository = new TONESRepository();
 		repository.initialize();
@@ -25,7 +25,7 @@
 		patternFinder.start();
 	}
 	
-	@Test
+//	@Test
 	public void testBioPortalRepository(){
 		OntologyRepository repository = new BioPortalRepository();
 		repository.initialize();

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