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[DL-Learner SVN] SF.net SVN: dl-learner:[3897] trunk/scripts
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From: <lor...@us...> - 2013-02-07 14:04:07
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Revision: 3897
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3897&view=rev
Author: lorenz_b
Date: 2013-02-07 14:03:54 +0000 (Thu, 07 Feb 2013)
Log Message:
-----------
Cont. matching.
Modified Paths:
--------------
trunk/scripts/pom.xml
trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java
trunk/scripts/src/test/java/org/dllearner/junit/OntologyMatchingTest.java
Modified: trunk/scripts/pom.xml
===================================================================
--- trunk/scripts/pom.xml 2013-02-06 18:17:28 UTC (rev 3896)
+++ trunk/scripts/pom.xml 2013-02-07 14:03:54 UTC (rev 3897)
@@ -116,6 +116,7 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
+ <version>3.4.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
Modified: trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java 2013-02-06 18:17:28 UTC (rev 3896)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java 2013-02-07 14:03:54 UTC (rev 3897)
@@ -19,15 +19,18 @@
import org.apache.log4j.Logger;
import org.dllearner.algorithms.celoe.CELOE;
+import org.dllearner.algorithms.qtl.QTL;
import org.dllearner.core.AbstractLearningProblem;
import org.dllearner.core.AbstractReasonerComponent;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedDescription;
import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningProblemUnsupportedException;
import org.dllearner.core.owl.Description;
import org.dllearner.core.owl.Individual;
import org.dllearner.core.owl.NamedClass;
import org.dllearner.core.owl.ObjectProperty;
+import org.dllearner.kb.LocalModelBasedSparqlEndpointKS;
import org.dllearner.kb.OWLAPIOntology;
import org.dllearner.kb.SparqlEndpointKS;
import org.dllearner.kb.sparql.ConciseBoundedDescriptionGenerator;
@@ -48,15 +51,16 @@
import org.dllearner.utilities.examples.AutomaticNegativeExampleFinderSPARQL2;
import org.dllearner.utilities.owl.OWLAPIDescriptionConvertVisitor;
import org.semanticweb.owlapi.apibinding.OWLManager;
-import org.semanticweb.owlapi.io.UnparsableOntologyException;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxOWLObjectRendererImpl;
+import com.clarkparsia.owlapiv3.XSD;
import com.google.common.collect.Sets;
import com.hp.hpl.jena.ontology.OntModel;
+import com.hp.hpl.jena.ontology.OntModelSpec;
import com.hp.hpl.jena.query.ParameterizedSparqlString;
import com.hp.hpl.jena.query.Query;
import com.hp.hpl.jena.query.QueryExecutionFactory;
@@ -64,6 +68,7 @@
import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.query.Syntax;
+import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
import com.hp.hpl.jena.rdf.model.RDFNode;
@@ -190,7 +195,7 @@
List<? extends EvaluatedDescription> learnedClassExpressions = computeMapping(nc, source, target);
if(learnedClassExpressions != null){
mapping.put(nc, learnedClassExpressions);
- //break;
+// break;
}
} catch (Exception e) {
logger.error("Failed for " + nc.getName(), e);
@@ -217,7 +222,7 @@
}
private List<? extends EvaluatedDescription> learnClassExpressions(KnowledgeBase kb, SortedSet<Individual> positiveExamples, boolean posNeg){
- Model fullFragment = null;
+ OntModel fullFragment = null;
try {
//get a sample of the positive examples
@@ -258,8 +263,6 @@
}
}
- AutomaticNegativeExampleFinderSPARQL2 finder = new AutomaticNegativeExampleFinderSPARQL2(kb.getEndpoint());
- //TODO find negative examples
mon.stop();
logger.info("Found " + negativeExamples.size() + " negative examples in " + mon.getLastValue() + "ms.");
}
@@ -276,7 +279,7 @@
logger.info("...done.");
//create fragment consisting of both
- fullFragment = ModelFactory.createDefaultModel();
+ fullFragment = ModelFactory.createOntologyModel(OntModelSpec.RDFS_MEM);
fullFragment.add(positiveFragment);
fullFragment.add(negativeFragment);
@@ -303,6 +306,15 @@
la.setNoisePercentage(25);
la.init();
la.start();
+
+ try {
+ QTL qtl = new QTL(lp, new LocalModelBasedSparqlEndpointKS(fullFragment));
+ qtl.init();
+ qtl.start();
+ System.out.println(qtl.getSPARQLQuery());
+ } catch (LearningProblemUnsupportedException e) {
+ e.printStackTrace();
+ }
logger.info(la.getCurrentlyBestEvaluatedDescription());
@@ -311,7 +323,7 @@
e.printStackTrace();
try {
new File("errors").mkdir();
- fullFragment.write(new FileOutputStream("errors/" + prettyPrint(currentClass) + ".ttl"), "TURTLE", null);
+ fullFragment.write(new FileOutputStream("errors/" + prettyPrint(currentClass) + "_inconsistent.ttl"), "TURTLE", null);
} catch (FileNotFoundException e1) {
e1.printStackTrace();
}
@@ -329,7 +341,7 @@
} catch (OWLOntologyCreationException e) {
e.printStackTrace();
try {
- model.write(new FileOutputStream(prettyPrint(currentClass) + "_conversion_error.ttl"), "TURTLE", null);
+ model.write(new FileOutputStream("errors/" + prettyPrint(currentClass) + "_conversion_error.ttl"), "TURTLE", null);
} catch (FileNotFoundException e1) {
e.printStackTrace();
}
@@ -376,11 +388,11 @@
Statement st = iter.next();
RDFNode object = st.getObject();
if(object.isLiteral()){
- statementsToRemove.add(st);
-// Literal lit = object.asLiteral();
-// if(lit.getDatatype() == null || lit.getDatatype().equals(XSD.STRING)){
-// iter.remove();
-// }
+// statementsToRemove.add(st);
+ Literal lit = object.asLiteral();
+ if(lit.getDatatype() == null || lit.getDatatype().equals(XSD.STRING)){
+ st.changeObject("shortened", "en");
+ }
}
}
fullFragment.remove(statementsToRemove);
Modified: trunk/scripts/src/test/java/org/dllearner/junit/OntologyMatchingTest.java
===================================================================
--- trunk/scripts/src/test/java/org/dllearner/junit/OntologyMatchingTest.java 2013-02-06 18:17:28 UTC (rev 3896)
+++ trunk/scripts/src/test/java/org/dllearner/junit/OntologyMatchingTest.java 2013-02-07 14:03:54 UTC (rev 3897)
@@ -100,7 +100,7 @@
}
@Test
- public void testSingleClass() {
+ public void testSingleClassOpenCycToDBpedia() {
OntologyMatching matcher = new OntologyMatching(openCyc, dbpedia);
NamedClass nc = new NamedClass("http://sw.opencyc.org/concept/Mx4r4fYeXvbPQdiKtoNafhmOew");
List<? extends EvaluatedDescription> mapping = matcher.computeMapping(nc, openCyc, dbpedia);
@@ -109,6 +109,26 @@
System.out.println(OntologyMatching.toHTMLWithLabels(alignment, openCyc, dbpedia));
}
+ @Test
+ public void testSingleClassLinkedGeoDataToDBpedia() {
+ OntologyMatching matcher = new OntologyMatching(linkedGeoData, dbpedia);
+ NamedClass nc = new NamedClass("http://linkedgeodata.org/ontology/Aerodrome");
+ List<? extends EvaluatedDescription> mapping = matcher.computeMapping(nc, linkedGeoData, dbpedia);
+ Map<Description, List<? extends EvaluatedDescription>> alignment = new HashMap<Description, List<? extends EvaluatedDescription>>();
+ alignment.put(nc, mapping);
+ System.out.println(OntologyMatching.toHTMLWithLabels(alignment, linkedGeoData, dbpedia));
+ }
+
+ @Test
+ public void testSingleClassDBpediaToLinkedGeoData() {
+ OntologyMatching matcher = new OntologyMatching(dbpedia, linkedGeoData);
+ NamedClass nc = new NamedClass("http://dbpedia.org/ontology/AdministrativeRegion");
+ List<? extends EvaluatedDescription> mapping = matcher.computeMapping(nc, dbpedia, linkedGeoData);
+ Map<Description, List<? extends EvaluatedDescription>> alignment = new HashMap<Description, List<? extends EvaluatedDescription>>();
+ alignment.put(nc, mapping);
+ System.out.println(OntologyMatching.toHTMLWithLabels(alignment, dbpedia, linkedGeoData));
+ }
+
private void save(String filename, Map<Description, List<? extends EvaluatedDescription>> mapping, KnowledgeBase source, KnowledgeBase target){
BufferedWriter out = null;
try {
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