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[DL-Learner SVN] SF.net SVN: dl-learner:[3893] trunk/scripts/src/main/java/org/dllearner/ scripts
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From: <lor...@us...> - 2013-01-30 09:55:31
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Revision: 3893
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3893&view=rev
Author: lorenz_b
Date: 2013-01-30 09:55:24 +0000 (Wed, 30 Jan 2013)
Log Message:
-----------
Continued matching.
Modified Paths:
--------------
trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java
Added Paths:
-----------
trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatchingTest.java
Modified: trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java 2013-01-25 13:04:28 UTC (rev 3892)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatching.java 2013-01-30 09:55:24 UTC (rev 3893)
@@ -1,6 +1,5 @@
package org.dllearner.scripts;
-import java.net.URL;
import java.text.DecimalFormat;
import java.util.HashMap;
import java.util.List;
@@ -10,10 +9,7 @@
import java.util.SortedSet;
import java.util.TreeSet;
-import org.apache.log4j.ConsoleAppender;
-import org.apache.log4j.Level;
import org.apache.log4j.Logger;
-import org.apache.log4j.PatternLayout;
import org.dllearner.algorithms.celoe.CELOE;
import org.dllearner.core.AbstractLearningProblem;
import org.dllearner.core.AbstractReasonerComponent;
@@ -24,7 +20,6 @@
import org.dllearner.core.owl.NamedClass;
import org.dllearner.core.owl.ObjectProperty;
import org.dllearner.kb.SparqlEndpointKS;
-import org.dllearner.kb.extraction.ExtractionAlgorithm;
import org.dllearner.kb.sparql.ExtractionDBCache;
import org.dllearner.kb.sparql.SPARQLTasks;
import org.dllearner.kb.sparql.SparqlEndpoint;
@@ -35,14 +30,11 @@
import org.dllearner.reasoning.FastInstanceChecker;
import org.dllearner.reasoning.SPARQLReasoner;
import org.dllearner.utilities.datastructures.Datastructures;
+import org.dllearner.utilities.datastructures.SetManipulation;
import org.dllearner.utilities.datastructures.SortedSetTuple;
import org.dllearner.utilities.examples.AutomaticNegativeExampleFinderSPARQL2;
-import org.dllearner.utilities.owl.DLLearnerDescriptionConvertVisitor;
import org.dllearner.utilities.owl.OWLAPIDescriptionConvertVisitor;
-import org.semanticweb.owlapi.io.ToStringRenderer;
-import uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxOWLObjectRendererImpl;
-
import com.hp.hpl.jena.query.Query;
import com.hp.hpl.jena.query.QueryFactory;
import com.hp.hpl.jena.query.QuerySolution;
@@ -132,9 +124,10 @@
logger.info(nc);
// get all via owl:sameAs related individuals
SortedSet<Individual> individuals = getRelatedIndividualsNamespaceAware(source, nc, target.getNamespace());
- logger.info(individuals);
+ logger.info(individuals.size());
//learn concept in KB2 based on the examples
if(individuals.size() >= 3){
+ individuals = SetManipulation.fuzzyShrinkInd(individuals, 10);
List<? extends EvaluatedDescription> learnedClassExpressions = learnClassExpression(target, individuals);
mapping.put(nc, learnedClassExpressions);
}
@@ -260,6 +253,9 @@
String uri = object.asResource().getURI();
//workaround for World Factbook - should be removed later
uri = uri.replace("http://www4.wiwiss.fu-berlin.de/factbook/resource/", "http://wifo5-03.informatik.uni-mannheim.de/factbook/resource/");
+ //workaround for OpenCyc - should be removed later
+ uri = uri.replace("http://sw.cyc.com", "http://sw.opencyc.org");
+
relatedIndividuals.add(new Individual(uri));
}
}
@@ -329,40 +325,5 @@
return cache;
}
-
-
}
-
- /**
- * @param args
- */
- public static void main(String[] args) throws Exception{
- //render output
- ToStringRenderer.getInstance().setRenderer(new ManchesterOWLSyntaxOWLObjectRendererImpl());
- //set logging properties
- Logger.getLogger(SparqlKnowledgeSource.class).setLevel(Level.WARN);
- Logger.getLogger(ExtractionAlgorithm.class).setLevel(Level.WARN);
- Logger.getLogger(org.dllearner.kb.extraction.Manager.class).setLevel(Level.WARN);
- Logger.getRootLogger().removeAllAppenders();
- Logger.getRootLogger().addAppender(new ConsoleAppender(new PatternLayout("%m%n")));
- // KB2
- SparqlEndpoint endpoint1 = SparqlEndpoint.getEndpointDBpedia();
- ExtractionDBCache cache1 = new ExtractionDBCache("cache");
- String namespace1 = "http://dbpedia.org/resource/";
- KnowledgeBase kb1 = new KnowledgeBase(endpoint1, cache1, namespace1);
- // KB2
- SparqlEndpoint endpoint2 = new SparqlEndpoint(new URL("http://wifo5-03.informatik.uni-mannheim.de/factbook/sparql"));
- ExtractionDBCache cache2 = new ExtractionDBCache("cache");
- //TODO problem with World Factbook is that old FU Berlin server is useless because of bugs and current version
- //is provide by University Of Mannheim now with another namespace http://wifo5-03.informatik.uni-mannheim.de/factbook/resource/
- //but the DBpedia links are still to the old D2R server instance
- //workaround: replace namespace before learning
- String namespace2 = "http://www4.wiwiss.fu-berlin.de/factbook/resource/";
- KnowledgeBase kb2 = new KnowledgeBase(endpoint2, cache2, namespace2);
-
- OntologyMatching matcher = new OntologyMatching(kb1, kb2);
- matcher.start();
-
- }
-
}
Added: trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatchingTest.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatchingTest.java (rev 0)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/OntologyMatchingTest.java 2013-01-30 09:55:24 UTC (rev 3893)
@@ -0,0 +1,85 @@
+package org.dllearner.scripts;
+
+import java.net.URL;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.PatternLayout;
+import org.dllearner.kb.extraction.ExtractionAlgorithm;
+import org.dllearner.kb.sparql.ExtractionDBCache;
+import org.dllearner.kb.sparql.SparqlEndpoint;
+import org.dllearner.kb.sparql.SparqlKnowledgeSource;
+import org.dllearner.scripts.OntologyMatching.KnowledgeBase;
+import org.junit.Before;
+import org.junit.Test;
+import org.semanticweb.owlapi.io.ToStringRenderer;
+
+import uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxOWLObjectRendererImpl;
+
+public class OntologyMatchingTest {
+
+ private KnowledgeBase dbpedia;
+ private KnowledgeBase worldFactBook;
+ private KnowledgeBase openCyc;
+ private KnowledgeBase linkedGeoData;
+
+ @Before
+ public void setUp() throws Exception {
+ // render output
+ ToStringRenderer.getInstance().setRenderer(new ManchesterOWLSyntaxOWLObjectRendererImpl());
+ // set logging properties
+ Logger.getLogger(SparqlKnowledgeSource.class).setLevel(Level.WARN);
+ Logger.getLogger(ExtractionAlgorithm.class).setLevel(Level.WARN);
+ Logger.getLogger(org.dllearner.kb.extraction.Manager.class).setLevel(Level.WARN);
+ Logger.getRootLogger().removeAllAppenders();
+ Logger.getRootLogger().addAppender(new ConsoleAppender(new PatternLayout("%m%n")));
+
+ //DBpedia
+ SparqlEndpoint endpoint = SparqlEndpoint.getEndpointDBpedia();
+ ExtractionDBCache cache = new ExtractionDBCache("cache");
+ String namespace = "http://dbpedia.org/resource/";
+ dbpedia = new KnowledgeBase(endpoint, cache, namespace);
+
+ //World Factbook
+ //TODO problem with World Factbook is that old FU Berlin server is useless because of bugs and current version
+ //is provide by University Of Mannheim now with another namespace http://wifo5-03.informatik.uni-mannheim.de/factbook/resource/
+ //but the DBpedia links are still to the old D2R server instance
+ //workaround: replace namespace before learning
+ endpoint = new SparqlEndpoint(new URL("http://wifo5-03.informatik.uni-mannheim.de/factbook/sparql"));
+ cache = new ExtractionDBCache("cache");
+ namespace = "http://www4.wiwiss.fu-berlin.de/factbook/resource/";
+ worldFactBook = new KnowledgeBase(endpoint, cache, namespace);
+
+ //local OpenCyc
+ endpoint = new SparqlEndpoint(new URL("http://localhost:8890/sparql"));
+ cache = new ExtractionDBCache("cache");
+ namespace = "http://sw.cyc.com";
+ openCyc = new KnowledgeBase(endpoint, cache, namespace);
+
+ //LinkedGeoData
+ endpoint = new SparqlEndpoint(new URL("http://linkedgeodata.org/sparql"));
+ cache = new ExtractionDBCache("cache");
+ namespace = "http://linkedgeodata.org/triplify/";
+ linkedGeoData = new KnowledgeBase(endpoint, cache, namespace);
+ }
+
+ @Test
+ public void testDBpediaWorldFactbook() {
+ OntologyMatching matcher = new OntologyMatching(dbpedia, worldFactBook);
+ matcher.start();
+ }
+
+ @Test
+ public void testDBpediaOpenCyc() {
+ OntologyMatching matcher = new OntologyMatching(dbpedia, openCyc);
+ matcher.start();
+ }
+
+ @Test
+ public void testDBpediaLinkedGeoData() {
+ OntologyMatching matcher = new OntologyMatching(dbpedia, linkedGeoData);
+ matcher.start();
+ }
+
+}
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