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[DL-Learner SVN] SF.net SVN: dl-learner:[3598] trunk/components-core/src/main/java/org/ dllearner/utilities/JustificationBasedCoherentOntologyExtractor.java
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From: <lor...@us...> - 2012-02-28 21:45:06
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Revision: 3598
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3598&view=rev
Author: lorenz_b
Date: 2012-02-28 21:44:59 +0000 (Tue, 28 Feb 2012)
Log Message:
-----------
Further debugging for eval.
Modified Paths:
--------------
trunk/components-core/src/main/java/org/dllearner/utilities/JustificationBasedCoherentOntologyExtractor.java
Modified: trunk/components-core/src/main/java/org/dllearner/utilities/JustificationBasedCoherentOntologyExtractor.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/utilities/JustificationBasedCoherentOntologyExtractor.java 2012-02-28 15:56:18 UTC (rev 3597)
+++ trunk/components-core/src/main/java/org/dllearner/utilities/JustificationBasedCoherentOntologyExtractor.java 2012-02-28 21:44:59 UTC (rev 3598)
@@ -238,7 +238,7 @@
cnt += unsatPropCnt;
}
- while(cnt >= 0){
+ while(cnt > 0){
//we remove the most appropriate axiom from the ontology
removeAppropriateAxiom();
@@ -301,6 +301,8 @@
entity2Explanations.clear();
entity2ModuleMap.clear();
+ save("log/" + fileName + "_" + cnt + "cls" + unsatPropCnt + "prop.owl");
+
if(!computeParallel){
unsatObjectProperties = getUnsatisfiableObjectProperties(reasoner);
logger.info("Remaining unsatisfiable object properties: " + unsatObjectProperties.size());
@@ -341,15 +343,9 @@
}
}
- try {
- incoherentOntology.getOWLOntologyManager().saveOntology(getOntologyWithAnnotations(incoherentOntology), new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream("log/dbpedia_coherent.owl")));
- } catch (OWLOntologyStorageException e) {
- e.printStackTrace();
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- }
+ save("log/" + fileName + "_coherent.owl");
- return getOntologyWithAnnotations(incoherentOntology);
+ return ontology;
}
private OWLOntology computeCoherentOntology(OWLOntology ontology) {
@@ -501,6 +497,10 @@
if(!dbpediaOntology.containsAxiomIgnoreAnnotations(axiom)){
logger.info("Removing axiom " + axiom + ".");
manager.removeAxiom(incoherentOntology, axiom);
+ //remove the axiom also from the loaded ontology
+ OWLAxiom originalAnnotatedAxiom = ontology.getAxiomsIgnoreAnnotations(axiom).iterator().next();
+ ontology.getOWLOntologyManager().removeAxiom(ontology, originalAnnotatedAxiom);
+
manager.addAxiom(diffOntology, axiom);
manager.applyChange(new RemoveAxiom(incoherentOntology, axiom));
removeFromExplanations(entity2Explanations, axiom);
@@ -511,10 +511,9 @@
}
private void save(String fileName){
- OWLOntology toSave = getOntologyWithAnnotations(incoherentOntology);
try {
- toSave.getOWLOntologyManager().saveOntology(toSave, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream(fileName)));
- toSave.getOWLOntologyManager().saveOntology(diffOntology, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream("log/" + diffFileName)));
+ ontology.getOWLOntologyManager().saveOntology(ontology, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream(fileName)));
+ diffOntology.getOWLOntologyManager().saveOntology(diffOntology, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream("log/" + diffFileName)));
} catch (OWLOntologyStorageException e) {
e.printStackTrace();
} catch (FileNotFoundException e) {
@@ -634,13 +633,14 @@
}
private OWLOntology getOntologyWithAnnotations(OWLOntology ontologyWithOutAnnotations){
+ logger.info("BEFORE: "+ ontology.getSubClassAxiomsForSubClass(factory.getOWLClass(IRI.create("http://dbpedia.org/ontology/Award"))));
OWLOntologyManager man = ontology.getOWLOntologyManager();
for (Iterator<OWLLogicalAxiom> iterator = ontology.getLogicalAxioms().iterator(); iterator.hasNext();) {
OWLLogicalAxiom axiom = iterator.next();
if(!ontologyWithOutAnnotations.containsAxiomIgnoreAnnotations(axiom)){
man.removeAxiom(ontology, axiom);
}
- }
+ }logger.info("AFTER: "+ ontology.getSubClassAxiomsForSubClass(factory.getOWLClass(IRI.create("http://dbpedia.org/ontology/Award"))));
return ontology;
}
@@ -677,9 +677,7 @@
Set<OWLAxiom> axiomsWithAnnotations = ontology.getAxiomsIgnoreAnnotations(axiom);
if(axiomsWithAnnotations.isEmpty()){
logger.info("Axiom with annotations not found: " + axiom);
- logger.info("Ontology contains axiom: " + incoherentOntology.containsAxiomIgnoreAnnotations(axiom));
- logger.info("Original loaded ontology contains axiom: " + ontology.containsAxiomIgnoreAnnotations(axiom));
- System.out.println(ontology.getSubClassAxiomsForSubClass(factory.getOWLClass(IRI.create("http://dbpedia.org/ontology/Award"))));
+ return 2;
}
OWLAxiom axiomWithAnnotations = axiomsWithAnnotations.iterator().next();
Set<OWLAnnotation> annotations = axiomWithAnnotations.getAnnotations(confidenceProperty);
@@ -694,38 +692,46 @@
public OWLOntology getModule(OWLEntity entity){
- OWLOntology module = entity2ModuleMap.get(entity);
- new File("log").mkdir();
- if(module == null){
- md5.reset();
- md5.update((ontology.getOWLOntologyManager().getOntologyDocumentIRI(ontology).toString() + entity.toStringID()).getBytes());
- String hash = MD5.asHex(md5.digest());
- String filename = "log/" + hash + ".owl";
- File file = new File(filename);
- boolean load = false;
- if(load){//file.exists()){
- module = loadModule(file);
- } else {
- try {
- module = OWLManager.createOWLOntologyManager().createOntology(ModularityUtils.extractModule(incoherentOntology, Collections.singleton(entity), ModuleType.TOP_OF_BOT));
- } catch (OWLOntologyCreationException e) {
- e.printStackTrace();
- }
- /*
- module = OntologyUtils.getOntologyFromAxioms(
- ModularityUtils.extractModule(incoherentOntology, Collections.singleton(entity), ModuleType.TOP_OF_BOT));
-
- try {
- manager.saveOntology(module, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream(filename)));
- } catch (OWLOntologyStorageException e) {
- e.printStackTrace();
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- }*/
- }
-
- //entity2ModuleMap.put(entity, module);
+ OWLOntology module = null;
+ try {
+ module = OWLManager.createOWLOntologyManager().createOntology(ModularityUtils.extractModule(incoherentOntology, Collections.singleton(entity), ModuleType.TOP_OF_BOT));
+ } catch (OWLOntologyCreationException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
}
+
+// OWLOntology module = entity2ModuleMap.get(entity);
+// new File("log").mkdir();
+// if(module == null){
+// md5.reset();
+// md5.update((ontology.getOWLOntologyManager().getOntologyDocumentIRI(ontology).toString() + entity.toStringID()).getBytes());
+// String hash = MD5.asHex(md5.digest());
+// String filename = "log/" + hash + ".owl";
+// File file = new File(filename);
+// boolean load = false;
+// if(load){//file.exists()){
+// module = loadModule(file);
+// } else {
+// try {
+// module = OWLManager.createOWLOntologyManager().createOntology(ModularityUtils.extractModule(incoherentOntology, Collections.singleton(entity), ModuleType.TOP_OF_BOT));
+// } catch (OWLOntologyCreationException e) {
+// e.printStackTrace();
+// }
+// /*
+// module = OntologyUtils.getOntologyFromAxioms(
+// ModularityUtils.extractModule(incoherentOntology, Collections.singleton(entity), ModuleType.TOP_OF_BOT));
+//
+// try {
+// manager.saveOntology(module, new RDFXMLOntologyFormat(), new BufferedOutputStream(new FileOutputStream(filename)));
+// } catch (OWLOntologyStorageException e) {
+// e.printStackTrace();
+// } catch (FileNotFoundException e) {
+// e.printStackTrace();
+// }*/
+// }
+//
+// //entity2ModuleMap.put(entity, module);
+// }
return module;
}
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