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[DL-Learner SVN] SF.net SVN: dl-learner:[3549] trunk/test/pdb/AA_properties.owl
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From: <km...@us...> - 2012-01-11 13:00:31
|
Revision: 3549
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3549&view=rev
Author: kmpf
Date: 2012-01-11 13:00:18 +0000 (Wed, 11 Jan 2012)
Log Message:
-----------
Added individuals to represent amino acid properties.
Modified Paths:
--------------
trunk/test/pdb/AA_properties.owl
Modified: trunk/test/pdb/AA_properties.owl
===================================================================
--- trunk/test/pdb/AA_properties.owl 2012-01-09 16:05:33 UTC (rev 3548)
+++ trunk/test/pdb/AA_properties.owl 2012-01-11 13:00:18 UTC (rev 3549)
@@ -2,31 +2,31 @@
<!DOCTYPE rdf:RDF [
+ <!ENTITY pdb "http://bio2rdf.org/pdb:" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
- <!ENTITY AA_properties "http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#" >
]>
-<rdf:RDF xmlns="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#"
- xml:base="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl"
+<rdf:RDF xmlns="http://dl-learner.org/pdb:"
+ xml:base="http://dl-learner.org/pdb:"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:AA_properties="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#">
- <owl:Ontology rdf:about=""/>
+ xmlns:pdb="http://bio2rdf.org/pdb:">
+ <owl:Ontology rdf:about="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
- // Object Properties
+ // Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
@@ -34,80 +34,72 @@
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#relational_property -->
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Datatypes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
- <owl:ObjectProperty rdf:about="#relational_property">
- <rdfs:label
- >relational_property</rdfs:label>
- </owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#modifier_property -->
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Object Properties
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
- <owl:ObjectProperty rdf:about="#modifier_property">
- <rdfs:label
- >modifier_property</rdfs:label>
- </owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_hydrophobicity -->
+ <!-- http://dl-learner.org/pdb:has_hydrophobicity -->
- <owl:ObjectProperty rdf:about="#has_hydrophobicity">
- <rdfs:label
- >has_hydrophobicity</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ <owl:ObjectProperty rdf:about="http://dl-learner.org/pdb:has_hydrophobicity">
+ <rdfs:label>has_hydrophobicity</rdfs:label>
+ <rdfs:domain rdf:resource="http://dl-learner.org/pdb:Hydrophobicity"/>
+ <rdfs:subPropertyOf rdf:resource="http://dl-learner.org/pdb:modifier_property"/>
</owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_size -->
+ <!-- http://dl-learner.org/pdb:has_polarity -->
- <owl:ObjectProperty rdf:about="#has_size">
- <rdfs:label>has_size</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ <owl:ObjectProperty rdf:about="http://dl-learner.org/pdb:has_polarity">
+ <rdfs:label>has_polarity</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="http://dl-learner.org/pdb:modifier_property"/>
</owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_polarity -->
+ <!-- http://dl-learner.org/pdb:has_size -->
- <owl:ObjectProperty rdf:about="#has_polarity">
- <rdfs:label>c</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ <owl:ObjectProperty rdf:about="http://dl-learner.org/pdb:has_size">
+ <rdfs:label>has_size</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="http://dl-learner.org/pdb:modifier_property"/>
</owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_aromaticity -->
+ <!-- http://dl-learner.org/pdb:modifier_property -->
- <owl:ObjectProperty rdf:about="#has_aromaticity">
- <rdfs:label>has_aromaticity</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ <owl:ObjectProperty rdf:about="http://dl-learner.org/pdb:modifier_property">
+ <rdfs:label>modifier_property</rdfs:label>
</owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_charge -->
+ <!-- http://dl-learner.org/pdb:relational_property -->
- <owl:ObjectProperty rdf:about="#has_charge">
- <rdfs:label>has_charge</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ <owl:ObjectProperty rdf:about="http://dl-learner.org/pdb:relational_property">
+ <rdfs:label>relational_property</rdfs:label>
</owl:ObjectProperty>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#is_in_hydrogen_bond -->
-
- <owl:ObjectProperty rdf:about="#is_in_hydrogen_bond">
- <rdfs:label
- >is_in_hydrogen_bond</rdfs:label>
- <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
- </owl:ObjectProperty>
-
-
-
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
@@ -119,1310 +111,735 @@
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Domain_entity -->
+ <!-- http://bio2rdf.org/pdb:Alanine -->
- <owl:Class rdf:about="#Domain_entity">
- <rdfs:label>Domain_entity</rdfs:label>
- <rdfs:subClassOf rdf:resource="&owl;Thing"/>
- </owl:Class>
-
-
-
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Independent_entity -->
-
- <owl:Class rdf:about="#Independent_entity">
- <rdfs:label
- >Independent_entity</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Domain_entity"/>
- <owl:disjointWith rdf:resource="#Value"/>
- </owl:Class>
-
-
-
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Value -->
-
- <owl:Class rdf:about="#Value">
- <rdfs:label>Value</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Domain_entity"/>
- </owl:Class>
-
-
-
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Amino_acid -->
-
- <owl:Class rdf:about="#Amino_acid">
- <rdfs:label>Amino_acid</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Independent_entity"/>
- </owl:Class>
-
-
-
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Alanine -->
-
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Alanine">
+ <owl:Class rdf:about="&pdb;Alanine">
<rdfs:label>Alanine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="#small"/>
- <rdf:Description rdf:about="#tiny"/>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:tiny"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#tiny"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Arginine -->
+ <!-- http://bio2rdf.org/pdb:Arginine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Arginine">
+ <owl:Class rdf:about="&pdb;Arginine">
<rdfs:label>Arginine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:positive"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#positive_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Asparagine -->
+ <!-- http://bio2rdf.org/pdb:Asparagine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Asparagine">
+ <owl:Class rdf:about="&pdb;Asparagine">
<rdfs:label>Asparagine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:small"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Aspartic_acid -->
+ <!-- http://bio2rdf.org/pdb:Aspartic_acid -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Aspartic_acid">
+ <owl:Class rdf:about="&pdb;Aspartic_acid">
<rdfs:label>Aspartic_acid</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:negative"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:small"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#negative_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Cysteine -->
+ <!-- http://bio2rdf.org/pdb:Cysteine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Cysteine">
+ <owl:Class rdf:about="&pdb;Cysteine">
<rdfs:label>Cysteine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:tiny"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glutamic_acid -->
+ <!-- http://bio2rdf.org/pdb:Glutamic_acid -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Glutamic_acid">
+ <owl:Class rdf:about="&pdb;Glutamic_acid">
<rdfs:label>Glutamic_acid</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:negative"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#negative_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glutamine -->
+ <!-- http://bio2rdf.org/pdb:Glutamine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Glutamine">
+ <owl:Class rdf:about="&pdb;Glutamine">
<rdfs:label>Glutamine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glycine -->
+ <!-- http://bio2rdf.org/pdb:Glycine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Glycine">
+ <owl:Class rdf:about="&pdb;Glycine">
<rdfs:label>Glycine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:tiny"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#tiny"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Histidine -->
+ <!-- http://bio2rdf.org/pdb:Histidine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Histidine">
+ <owl:Class rdf:about="&pdb;Histidine">
<rdfs:label>Histidine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#positive_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:positive"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aromatic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Isoleucine -->
+ <!-- http://bio2rdf.org/pdb:Isoleucine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Isoleucine">
+ <owl:Class rdf:about="&pdb;Isoleucine">
<rdfs:label>Isoleucine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aliphatic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Leucine -->
+ <!-- http://bio2rdf.org/pdb:Leucine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Leucine">
+ <owl:Class rdf:about="&pdb;Leucine">
<rdfs:label>Leucine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aliphatic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Lysine -->
+ <!-- http://bio2rdf.org/pdb:Lysine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Lysine">
+ <owl:Class rdf:about="&pdb;Lysine">
<rdfs:label>Lysine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:positive"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#positive_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Methionine -->
+ <!-- http://bio2rdf.org/pdb:Methionine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Methionine">
+ <owl:Class rdf:about="&pdb;Methionine">
<rdfs:label>Methionine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Phenylalanine -->
+ <!-- http://bio2rdf.org/pdb:Phenylalanine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Phenylalanine">
+ <owl:Class rdf:about="&pdb;Phenylalanine">
<rdfs:label>Phenylalanine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aromatic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Proline -->
+ <!-- http://bio2rdf.org/pdb:Proline -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Proline">
+ <owl:Class rdf:about="&pdb;Proline">
<rdfs:label>Proline</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:unpolar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#unpolar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:small"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Serine -->
+ <!-- http://bio2rdf.org/pdb:Serine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Serine">
+ <owl:Class rdf:about="&pdb;Serine">
<rdfs:label>Serine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophilic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:tiny"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#tiny"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophilic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Threonine -->
+ <!-- http://bio2rdf.org/pdb:Threonine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Threonine">
+ <owl:Class rdf:about="&pdb;Threonine">
<rdfs:label>Threonine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:small"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#small"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:hydrophobic"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Tryptophan -->
+ <!-- http://bio2rdf.org/pdb:Tryptophan -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Tryptophan">
+ <owl:Class rdf:about="&pdb;Tryptophan">
<rdfs:label>Tryptophan</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aromatic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#aromatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="#neutral_charge"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_size"/>
- <owl:someValuesFrom rdf:resource="#large"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
- </owl:Restriction>
- </rdfs:subClassOf>
</owl:Class>
- <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Tyrosine -->
+ <!-- http://bio2rdf.org/pdb:Tyrosine -->
- <owl:Class rdf:about="http://bio2rdf.org/pdb:Tyrosine">
+ <owl:Class rdf:about="&pdb;Tyrosine">
<rdfs:label>Tyrosine</rdfs:label>
- <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf rdf:resource="http://dl-learner.org/pdb:Amino_acid"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_hydrophobicity"/>
- <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_polarity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:polar"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_aromaticity"/>
- <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_hydrophobicity"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:aromatic"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="#has_polarity"/>
- <owl:someValuesFrom rdf:resource="#polar"/>
+ <owl:onProperty rdf:resource="http://dl-learner.org/pdb:has_size"/>
+ <owl:hasValue rdf:resource="http://dl-learner.org/pdb:large"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
- <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="#has_charge"/>
- <owl:someValuesFrom rdf:resource="...
[truncated message content] |
