[DL-Learner SVN] SF.net SVN: dl-learner:[3336] trunk/test/pdb/1XFF.A.Asparagine.conf

[<jen...@us...>]

Revision: 3336
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3336&view=rev
Author:   jenslehmann
Date:     2011-10-27 13:32:21 +0000 (Thu, 27 Oct 2011)
Log Message:
-----------
example conf file (new syntax)

Added Paths:
-----------
    trunk/test/pdb/1XFF.A.Asparagine.conf

Added: trunk/test/pdb/1XFF.A.Asparagine.conf
===================================================================
--- trunk/test/pdb/1XFF.A.Asparagine.conf	                        (rev 0)
+++ trunk/test/pdb/1XFF.A.Asparagine.conf	2011-10-27 13:32:21 UTC (rev 3336)
@@ -0,0 +1,25 @@
+
+// declare some prefixes to use as abbreviations
+prefixes = [ ("pdb","http://bio2rdf.org/pdb:1XFF/") ]
+
+// knowledge source definition
+ks.type = "OWL File"
+ks.fileName = "AA_properties.owl"
+
+ks2.type = "OWL File"
+ks2.fileName = "1XFF/1XFF.A.rdf"
+
+// reasoner
+reasoner.type = "fast instance checker"
+reasoner.sources = { ks2 }
+
+// learning problem
+lp.type = "posNegStandard"
+lp.positiveExamples = { "pdb:chemicalComponent_A103", "pdb:chemicalComponent_A132" }
+lp.negativeExamples = { "pdb:chemicalComponent_A84", "pdb:chemicalComponent_A98", "pdb:chemicalComponent_A187", "pdb:chemicalComponent_A220", "pdb:chemicalComponent_A237"}
+
+// create learning algorithm to run
+alg.type = "celoe"
+alg.maxExecutionTimeInSeconds = 10
+// alg.writeSearchTree = true
+

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