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[DL-Learner SVN] SF.net SVN: dl-learner:[3153] trunk/scripts
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From: <lor...@us...> - 2011-08-28 13:10:14
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Revision: 3153
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3153&view=rev
Author: lorenz_b
Date: 2011-08-28 13:10:07 +0000 (Sun, 28 Aug 2011)
Log Message:
-----------
Writing additional axioms, not contained in the reference ontology, into separate files for each axiom type. All into folder evaluation.
Modified Paths:
--------------
trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java
Property Changed:
----------------
trunk/scripts/
Property changes on: trunk/scripts
___________________________________________________________________
Modified: svn:ignore
- target
log
scripts.iml
.classpath
.project
.settings
db_settings.ini
enrichment_eval.html
+ target
log
scripts.iml
.classpath
.project
.settings
db_settings.ini
enrichment_eval.html
evaluation
Modified: trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java 2011-08-28 13:09:33 UTC (rev 3152)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java 2011-08-28 13:10:07 UTC (rev 3153)
@@ -20,9 +20,11 @@
package org.dllearner.scripts.evaluation;
import java.io.BufferedInputStream;
+import java.io.BufferedWriter;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileReader;
+import java.io.FileWriter;
import java.io.IOException;
import java.io.InputStream;
import java.lang.reflect.InvocationTargetException;
@@ -41,16 +43,16 @@
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
+import java.util.LinkedHashMap;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
+import java.util.Map.Entry;
+import java.util.Set;
import java.util.SortedSet;
import java.util.TreeSet;
-import java.util.Map.Entry;
-import java.util.Set;
import java.util.prefs.Preferences;
-import org.apache.commons.collections.SetUtils;
import org.apache.commons.compress.compressors.CompressorException;
import org.apache.commons.compress.compressors.CompressorInputStream;
import org.apache.commons.compress.compressors.CompressorStreamFactory;
@@ -94,7 +96,6 @@
import org.dllearner.core.configurators.CELOEConfigurator;
import org.dllearner.core.owl.Axiom;
import org.dllearner.core.owl.DatatypeProperty;
-import org.dllearner.core.owl.DisjointClassesAxiom;
import org.dllearner.core.owl.EquivalentClassesAxiom;
import org.dllearner.core.owl.Individual;
import org.dllearner.core.owl.NamedClass;
@@ -104,7 +105,6 @@
import org.dllearner.kb.sparql.SPARQLTasks;
import org.dllearner.kb.sparql.SparqlEndpoint;
import org.dllearner.kb.sparql.SparqlKnowledgeSource;
-import org.dllearner.learningproblems.AxiomScore;
import org.dllearner.learningproblems.ClassLearningProblem;
import org.dllearner.reasoning.FastInstanceChecker;
import org.dllearner.reasoning.SPARQLReasoner;
@@ -123,7 +123,6 @@
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAxiom;
-import org.semanticweb.owlapi.model.OWLClassAxiom;
import org.semanticweb.owlapi.model.OWLDataFactory;
import org.semanticweb.owlapi.model.OWLDataPropertyAxiom;
import org.semanticweb.owlapi.model.OWLDisjointClassesAxiom;
@@ -151,10 +150,10 @@
// max. number of attempts per algorithm and entity, because to many queries
// in a short time could cause blocking by the endpoint
- private final int maxAttempts = 3;
+ private final int maxAttempts = 5;
//delay between 2 attempts
- private final int delayInMilliseconds = 10000;
+ private final int delayInMilliseconds = 15000;
// max. execution time for each learner for each entity
private int maxExecutionTimeInSeconds = 10;
@@ -166,7 +165,8 @@
// only axioms with a score above this threshold will be considered
private double threshold = 0.7;
- private SparqlEndpoint endpoint = SparqlEndpoint.getEndpointDBpedia();//getEndpointDBpediaLiveAKSW();
+ private SparqlEndpoint endpoint = SparqlEndpoint.getEndpointDBpediaLiveAKSW();
+// private SparqlEndpoint endpoint = SparqlEndpoint.getEndpointDBpedia();
// can be used to only evaluate a part of DBpedia
private int maxObjectProperties = 10;
@@ -191,6 +191,7 @@
prefixes = new HashMap<String,String>();
prefixes.put("dbp","http://dbpedia.org/property/");
prefixes.put("dbo","http://dbpedia.org/ontology/");
+ prefixes.put("yago", "http://dbpedia.org/class/");
objectPropertyAlgorithms = new LinkedList<Class<? extends AxiomLearningAlgorithm>>();
objectPropertyAlgorithms.add(DisjointObjectPropertyAxiomLearner.class);
@@ -336,6 +337,7 @@
timeout = false;
if(attempt > 1){
try {
+ System.out.println("Got timeout. Waiting " + delayInMilliseconds + " ms ...");
Thread.sleep(delayInMilliseconds);
} catch (InterruptedException e) {
e.printStackTrace();
@@ -765,6 +767,7 @@
Set<String> relevantAxioms = getRelevantAxioms(type, entities);
Set<String> notFoundAxioms = org.mindswap.pellet.utils.SetUtils.difference(relevantAxioms, foundAxioms);
+ System.out.println(notFoundAxioms);
Set<String> additionalAxioms = org.mindswap.pellet.utils.SetUtils.difference(foundAxioms, relevantAxioms);
@@ -777,14 +780,50 @@
append(additionalAxioms.size()).
append(" & & & \\\\\n");
System.out.println(type.getName() + ": " + found + "/" + total);
+
+
+ //write additional axioms into file
+ writeToDisk(type, additionalAxioms);
}
table2.append("\\end{tabulary}");
System.out.println(table2.toString());
}
+ private void writeToDisk(AxiomType<? extends OWLAxiom> axiomType, Set<String> axioms){
+ String fileName = axiomType.getName().replaceAll(" ", "_") + ".txt";
+
+ BufferedWriter out = null;
+ try {
+ File dir = new File("evaluation");
+ if(!dir.exists()){
+ dir.mkdir();
+ }
+
+ File file = new File(dir + File.separator + fileName);
+ if(!file.exists()){
+ file.createNewFile();
+ }
+ out = new BufferedWriter(new FileWriter(file));
+ for(String axiom : axioms){
+ out.write(axiom);
+ out.newLine();
+ }
+ } catch (IOException e) {
+ e.printStackTrace();
+ } finally {
+ if(out != null){
+ try {
+ out.close();
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+ }
+ }
+ }
+
private Map<AxiomType<? extends OWLAxiom>, List<Class<? extends LearningAlgorithm>>> getAxiomTypesWithLearningAlgorithms(){
- Map<AxiomType<? extends OWLAxiom>, List<Class<? extends LearningAlgorithm>>> axiomType2Algorithm = new HashMap<AxiomType<? extends OWLAxiom>, List<Class<? extends LearningAlgorithm>>>();
+ Map<AxiomType<? extends OWLAxiom>, List<Class<? extends LearningAlgorithm>>> axiomType2Algorithm = new LinkedHashMap<AxiomType<? extends OWLAxiom>, List<Class<? extends LearningAlgorithm>>>();
axiomType2Algorithm.put(AxiomType.SUBCLASS_OF, Arrays.asList((Class<? extends LearningAlgorithm>[])new Class[]{SimpleSubclassLearner.class, CELOE.class}));
axiomType2Algorithm.put(AxiomType.EQUIVALENT_CLASSES, Arrays.asList((Class<? extends LearningAlgorithm>[])new Class[]{CELOE.class}));
axiomType2Algorithm.put(AxiomType.DISJOINT_CLASSES, Arrays.asList((Class<? extends LearningAlgorithm>[])new Class[]{DisjointClassesLearner.class}));
@@ -929,7 +968,7 @@
{
EnrichmentEvaluation ee = new EnrichmentEvaluation();
-// ee.start();
+ ee.start();
// ee.printResultsPlain();
ee.printResultsLaTeX();
Files.createFile(new File("enrichment_eval.html"), ee.printHTMLTable());
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