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[DL-Learner SVN] SF.net SVN: dl-learner:[3025] trunk
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From: <jen...@us...> - 2011-08-10 14:19:11
|
Revision: 3025
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=3025&view=rev
Author: jenslehmann
Date: 2011-08-10 14:19:01 +0000 (Wed, 10 Aug 2011)
Log Message:
-----------
disallowed using refexamples in config files (use ocel instead)
Modified Paths:
--------------
trunk/examples/arch/arch.conf
trunk/examples/arch/arch_owl.conf
trunk/examples/carcinogenesis/param.conf
trunk/examples/carcinogenesis/train.conf
trunk/examples/carcinogenesis/validate.conf
trunk/examples/datatypes/double.conf
trunk/examples/datatypes/stringtyped.conf
trunk/examples/datatypes/stringuntyped.conf
trunk/examples/epc/rs002.conf
trunk/examples/epc/rs004.conf
trunk/examples/epc/rs005.conf
trunk/examples/epc/rs006.conf
trunk/examples/family-benchmark/Aunt.conf
trunk/examples/family-benchmark/Cousin.conf
trunk/examples/krk/KRK_ONE_ZERO_fastInstance.conf
trunk/examples/krk/KRK_ZERO_ONE_fastInstance.conf
trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf
trunk/examples/krk/complete_no_draw.conf
trunk/examples/krk/test_ZERO_against_1to16.conf
trunk/examples/lymphography/lymphography_Class1.conf
trunk/examples/lymphography/lymphography_Class2.conf
trunk/examples/lymphography/lymphography_Class3.conf
trunk/examples/lymphography/lymphography_Class4.conf
trunk/examples/mutagenesis/train1.conf
trunk/examples/mutagenesis/train2.conf
trunk/examples/semantic_bible/hasvalue_example.conf
trunk/examples/semantic_bible/hasvalue_simple.conf
trunk/examples/semantic_bible/normal.conf
trunk/examples/semantic_bible/normal_long_retrieval_time.conf
trunk/examples/semantic_bible/sparqlbible.conf
trunk/examples/semantic_bible/woman.conf
trunk/examples/sparql/Aristotle.conf
trunk/examples/sparql/AristotlePos.conf
trunk/examples/sparql/actors2.conf
trunk/examples/sparql/britishPrimeMinisters.conf
trunk/examples/sparql/govtrack.conf
trunk/examples/sparql/scrobble.conf
trunk/examples/swore/swore.conf
trunk/interfaces/src/main/java/org/dllearner/cli/ConfMapper.java
trunk/test/alzheimer/train1.conf
trunk/test/alzheimer/train2.conf
trunk/test/alzheimer/train3.conf
trunk/test/alzheimer/train4.conf
trunk/test/breasttissue/train1.conf
trunk/test/breasttissue/train2.conf
trunk/test/breasttissue/train3.conf
trunk/test/breasttissue/train4.conf
trunk/test/breasttissue/train5.conf
trunk/test/breasttissue/train6.conf
trunk/test/breasttissue/train7.conf
trunk/test/cardiotocography/train1.conf
trunk/test/cardiotocography/train10.conf
trunk/test/cardiotocography/train11.conf
trunk/test/cardiotocography/train12.conf
trunk/test/cardiotocography/train13.conf
trunk/test/cardiotocography/train2.conf
trunk/test/cardiotocography/train3.conf
trunk/test/cardiotocography/train4.conf
trunk/test/cardiotocography/train5.conf
trunk/test/cardiotocography/train6.conf
trunk/test/cardiotocography/train7.conf
trunk/test/cardiotocography/train8.conf
trunk/test/cardiotocography/train9.conf
trunk/test/heart/train.conf
trunk/test/mammographic/train.conf
trunk/test/parkinsons/train.conf
trunk/test/suramin/train.conf
trunk/test/testCaseSPARQLDescription/1266166637085.conf
trunk/test/testCaseSPARQLDescription/combined.conf
trunk/test/testDomainRange/notWorking.conf
trunk/test/testDomainRange/working.conf
Modified: trunk/examples/arch/arch.conf
===================================================================
--- trunk/examples/arch/arch.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/arch/arch.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -16,10 +16,10 @@
* Copyright (C) 2007, Sebastian Hellmann
*/
-algorithm = refexamples;
+algorithm = ocel;
reasoner = fastInstanceChecker;
// comment this out if the search should start from construction
-// refexamples.startClass = "http://localhost/foo#construction";
+// ocel.startClass = "http://localhost/foo#construction";
// export("arch.owl");
import("arch.kb");
Modified: trunk/examples/arch/arch_owl.conf
===================================================================
--- trunk/examples/arch/arch_owl.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/arch/arch_owl.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -16,8 +16,8 @@
* Copyright (C) 2007, Sebastian Hellmann
*/
-refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/test.txt";
+ocel.writeSearchTree = true;
+ocel.searchTreeFile = "log/test.txt";
/** background knowledge **/
import("arch.owl");
Modified: trunk/examples/carcinogenesis/param.conf
===================================================================
--- trunk/examples/carcinogenesis/param.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/carcinogenesis/param.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,20 +4,20 @@
// general setup
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/carcinogenesis#Compound";
// search tree
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/carcinogenesis/searchTree.log";
// store some settings to make the experiment reproducable in the future
-refexamples.negativeWeight = 0.8;
-refexamples.startNodeBonus = 1.0;
-refexamples.forceRefinementLengthIncrease = false;
-refexamples.cardinalityLimit = 5;
-refexamples.usePropernessChecks = false;
+ocel.negativeWeight = 0.8;
+ocel.startNodeBonus = 1.0;
+ocel.forceRefinementLengthIncrease = false;
+ocel.cardinalityLimit = 5;
+ocel.usePropernessChecks = false;
+"http://dl-learner.org/carcinogenesis#d1"
+"http://dl-learner.org/carcinogenesis#d10"
Modified: trunk/examples/carcinogenesis/train.conf
===================================================================
--- trunk/examples/carcinogenesis/train.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/carcinogenesis/train.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -2,20 +2,20 @@
// general setup
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 32;
-refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
+algorithm = ocel;
+ocel.noisePercentage = 32;
+ocel.startClass = "http://dl-learner.org/carcinogenesis#Compound";
// search tree
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/carcinogenesis/searchTree.log";
// store some settings to make the experiment reproducable in the future
-refexamples.negativeWeight = 0.8;
-refexamples.startNodeBonus = 1.0;
-refexamples.forceRefinementLengthIncrease = false;
-refexamples.cardinalityLimit = 5;
-refexamples.usePropernessChecks = false;
+ocel.negativeWeight = 0.8;
+ocel.startNodeBonus = 1.0;
+ocel.forceRefinementLengthIncrease = false;
+ocel.cardinalityLimit = 5;
+ocel.usePropernessChecks = false;
+"http://dl-learner.org/carcinogenesis#d1"
+"http://dl-learner.org/carcinogenesis#d10"
Modified: trunk/examples/carcinogenesis/validate.conf
===================================================================
--- trunk/examples/carcinogenesis/validate.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/carcinogenesis/validate.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,20 +4,20 @@
// general setup
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/carcinogenesis#Compound";
// search tree
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/carcinogenesis/searchTree.log";
// store some settings to make the experiment reproducable in the future
-refexamples.negativeWeight = 0.8;
-refexamples.startNodeBonus = 1.0;
-refexamples.forceRefinementLengthIncrease = false;
-refexamples.cardinalityLimit = 5;
-refexamples.usePropernessChecks = false;
+ocel.negativeWeight = 0.8;
+ocel.startNodeBonus = 1.0;
+ocel.forceRefinementLengthIncrease = false;
+ocel.cardinalityLimit = 5;
+ocel.usePropernessChecks = false;
+"http://dl-learner.org/carcinogenesis#d25"
+"http://dl-learner.org/carcinogenesis#d252"
Modified: trunk/examples/datatypes/double.conf
===================================================================
--- trunk/examples/datatypes/double.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/datatypes/double.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -8,9 +8,9 @@
* Copyright (C) 2008, Jens Lehmann
*/
-algorithm = refexamples;
-// refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/doubleTree.txt";
+algorithm = ocel;
+// ocel.writeSearchTree = true;
+ocel.searchTreeFile = "log/doubleTree.txt";
reasoner = fastInstanceChecker;
import("double.owl");
Modified: trunk/examples/datatypes/stringtyped.conf
===================================================================
--- trunk/examples/datatypes/stringtyped.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/datatypes/stringtyped.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,11 +4,11 @@
* typedLiteral hasValue "test"
*/
-algorithm = refexamples;
-// refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/stringTypedTree.txt";
+algorithm = ocel;
+// ocel.writeSearchTree = true;
+ocel.searchTreeFile = "log/stringTypedTree.txt";
reasoner = fastInstanceChecker;
-refexamples.useDataHasValueConstructor=true;
+ocel.useDataHasValueConstructor=true;
import("string.owl");
Modified: trunk/examples/datatypes/stringuntyped.conf
===================================================================
--- trunk/examples/datatypes/stringuntyped.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/datatypes/stringuntyped.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,10 +4,10 @@
* notType hasValue "test"
*/
-algorithm = refexamples;
-// refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/stringUntypedTree.txt";
-refexamples.useDataHasValueConstructor=true;
+algorithm = ocel;
+// ocel.writeSearchTree = true;
+ocel.searchTreeFile = "log/stringUntypedTree.txt";
+ocel.useDataHasValueConstructor=true;
reasoner = fastInstanceChecker;
import("string.owl");
Modified: trunk/examples/epc/rs002.conf
===================================================================
--- trunk/examples/epc/rs002.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/epc/rs002.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,8 +1,8 @@
import("sap_epc.owl");
-refexamples.startClass = "http://localhost/aris/sap_model.owl#EPC";
+ocel.startClass = "http://localhost/aris/sap_model.owl#EPC";
// this enforces a breadth like search
-refexamples.expansionPenaltyFactor = 0.5;
+ocel.expansionPenaltyFactor = 0.5;
+"http://localhost/aris/sap_model.owl#bsj0__6_____u__"
+"http://localhost/aris/sap_model.owl#fa6v__6_____u__"
Modified: trunk/examples/epc/rs004.conf
===================================================================
--- trunk/examples/epc/rs004.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/epc/rs004.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("sap_epc.owl");
-refexamples.startClass = "http://localhost/aris/sap_model.owl#EPC";
-refexamples.expansionPenaltyFactor = 0.5;
+ocel.startClass = "http://localhost/aris/sap_model.owl#EPC";
+ocel.expansionPenaltyFactor = 0.5;
+"http://localhost/aris/sap_model.owl#4vqy__6_____u__"
+"http://localhost/aris/sap_model.owl#ab0h__6_____u__"
Modified: trunk/examples/epc/rs005.conf
===================================================================
--- trunk/examples/epc/rs005.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/epc/rs005.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("sap_epc.owl");
-refexamples.startClass = "http://localhost/aris/sap_model.owl#EPC";
-refexamples.expansionPenaltyFactor = 0.5;
+ocel.startClass = "http://localhost/aris/sap_model.owl#EPC";
+ocel.expansionPenaltyFactor = 0.5;
+"http://localhost/aris/sap_model.owl#8kx7__6_____u__"
-"http://localhost/aris/sap_model.owl#50ni__6_____u__"
Modified: trunk/examples/epc/rs006.conf
===================================================================
--- trunk/examples/epc/rs006.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/epc/rs006.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("sap_epc.owl");
-refexamples.startClass = "http://localhost/aris/sap_model.owl#EPC";
-refexamples.expansionPenaltyFactor = 0.5;
+ocel.startClass = "http://localhost/aris/sap_model.owl#EPC";
+ocel.expansionPenaltyFactor = 0.5;
+"http://localhost/aris/sap_model.owl#h19w__6_____u__"
+"http://localhost/aris/sap_model.owl#9eke__6_____u__"
Modified: trunk/examples/family-benchmark/Aunt.conf
===================================================================
--- trunk/examples/family-benchmark/Aunt.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/family-benchmark/Aunt.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("family-benchmark.owl");
// TODO All Quantifier causes "wrong" areas of the search space to be explored
-refexamples.useAllConstructor = false;
+ocel.useAllConstructor = false;
+"http://www.benchmark.org/family#F2F14"
+"http://www.benchmark.org/family#F2F12"
Modified: trunk/examples/family-benchmark/Cousin.conf
===================================================================
--- trunk/examples/family-benchmark/Cousin.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/family-benchmark/Cousin.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("family-benchmark.owl");
// TODO All Quantifier causes "wrong" areas of the search space to be explored
-refexamples.useAllConstructor = false;
+ocel.useAllConstructor = false;
+"http://www.benchmark.org/family#F2M13"
+"http://www.benchmark.org/family#F2F14"
Modified: trunk/examples/krk/KRK_ONE_ZERO_fastInstance.conf
===================================================================
--- trunk/examples/krk/KRK_ONE_ZERO_fastInstance.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/krk/KRK_ONE_ZERO_fastInstance.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -11,11 +11,11 @@
import("KRK_ZERO_ONE.owl");
-refexamples.ignoredConcepts={
+ocel.ignoredConcepts={
"http://www.test.de/test#ONE",
"http://www.test.de/test#ZERO"};
-algorithm = refexamples;
+algorithm = ocel;
reasoner=fastInstanceChecker;
+"http://www.test.de/test#game100"
Modified: trunk/examples/krk/KRK_ZERO_ONE_fastInstance.conf
===================================================================
--- trunk/examples/krk/KRK_ZERO_ONE_fastInstance.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/krk/KRK_ZERO_ONE_fastInstance.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -25,13 +25,13 @@
*/
import("KRK_ZERO_ONE.owl");
-refexamples.ignoredConcepts={
+ocel.ignoredConcepts={
"http://www.test.de/test#ONE",
"http://www.test.de/test#ZERO"};
-algorithm = refexamples;
+algorithm = ocel;
reasoner=fastInstanceChecker;
+"http://www.test.de/test#game1"
Modified: trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf
===================================================================
--- trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -8,7 +8,7 @@
import("KRK_ZERO_against_1to5.owl");
-refexamples.ignoredConcepts={
+ocel.ignoredConcepts={
"http://www.test.de/test#FIVE",
"http://www.test.de/test#FOUR",
"http://www.test.de/test#ONE",
@@ -16,11 +16,11 @@
"http://www.test.de/test#TWO",
"http://www.test.de/test#ZERO"};
-algorithm = refexamples;
+algorithm = ocel;
reasoner=fastInstanceChecker;
-refexamples.startClass = "http://www.test.de/test#Game";
-refexamples.useAllConstructor = false;
-refexamples.noisePercentage = 2;
+ocel.startClass = "http://www.test.de/test#Game";
+ocel.useAllConstructor = false;
+ocel.noisePercentage = 2;
/**ZERO**/
+"http://www.test.de/test#game1"
Modified: trunk/examples/krk/complete_no_draw.conf
===================================================================
--- trunk/examples/krk/complete_no_draw.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/krk/complete_no_draw.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -5,7 +5,7 @@
*/
import("complete_nodraw.owl");
-refexamples.ignoredConcepts={
+ocel.ignoredConcepts={
"http://dl-learner.org/krk#EIGHT",
"http://dl-learner.org/krk#ELEVEN",
@@ -25,15 +25,15 @@
"http://dl-learner.org/krk#TWO",
"http://dl-learner.org/krk#ZERO"};
-algorithm = refexamples;
+algorithm = ocel;
reasoner=fastInstanceChecker;
//reasoner=owlAPIReasoner;
//fastInstanceChecker.reasonerType = fact;
-refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = true;
-refexamples.useCardinalityRestrictions = false;
-refexamples.useNegation = false;
+ocel.useAllConstructor = false;
+ocel.useExistsConstructor = true;
+ocel.useCardinalityRestrictions = false;
+ocel.useNegation = false;
/**ZERO**/
+"http://dl-learner.org/krk#game1"
Modified: trunk/examples/krk/test_ZERO_against_1to16.conf
===================================================================
--- trunk/examples/krk/test_ZERO_against_1to16.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/krk/test_ZERO_against_1to16.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -13,7 +13,7 @@
import("test_ZERO_against_1to16.owl");
-refexamples.ignoredConcepts={
+ocel.ignoredConcepts={
"http://www.test.de/test#EIGHT",
"http://www.test.de/test#ELEVEN",
"http://www.test.de/test#FIFTEEN",
@@ -34,7 +34,7 @@
//problem = posOnlyDefinition;
-algorithm = refexamples;
+algorithm = ocel;
//algorithm = refinement;
//refinement.heuristic=flexible;
reasoner=fastInstanceChecker;
Modified: trunk/examples/lymphography/lymphography_Class1.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class1.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/lymphography/lymphography_Class1.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -17,17 +17,17 @@
*/
-algorithm = refexamples;
-refexamples.ignoredConcepts = {
+algorithm = ocel;
+ocel.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = true;
-refexamples.useNegation = false;
+ocel.useAllConstructor = false;
+ocel.useExistsConstructor = true;
+ocel.useNegation = false;
import("lymphography.owl");
/*Class1*/
Modified: trunk/examples/lymphography/lymphography_Class2.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/lymphography/lymphography_Class2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -15,18 +15,18 @@
a new experimental version of the refinement algorithm)
*/
-algorithm = refexamples;
-refexamples.ignoredConcepts = {
+algorithm = ocel;
+ocel.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-//refexamples.useAllConstructor = false;
-//refexamples.useExistsConstructor = true;
-//refexamples.useNegation = false;
-refexamples.noisePercentage = 16.0;
+//ocel.useAllConstructor = false;
+//ocel.useExistsConstructor = true;
+//ocel.useNegation = false;
+ocel.noisePercentage = 16.0;
import("lymphography.owl");
Modified: trunk/examples/lymphography/lymphography_Class3.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class3.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/lymphography/lymphography_Class3.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -17,18 +17,18 @@
*/
-algorithm = refexamples;
-refexamples.ignoredConcepts = {
+algorithm = ocel;
+ocel.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = true;
-refexamples.useNegation = false;
-refexamples.noisePercentage = 19.0;
+ocel.useAllConstructor = false;
+ocel.useExistsConstructor = true;
+ocel.useNegation = false;
+ocel.noisePercentage = 19.0;
import("lymphography.owl");
/*Class3*/
Modified: trunk/examples/lymphography/lymphography_Class4.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class4.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/lymphography/lymphography_Class4.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -15,18 +15,18 @@
a new experimental version of the refinement algorithm)
*/
-algorithm = refexamples;
+algorithm = ocel;
-refexamples.ignoredConcepts = {
+ocel.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = true;
-refexamples.useNegation = false;
+ocel.useAllConstructor = false;
+ocel.useExistsConstructor = true;
+ocel.useNegation = false;
import("lymphography.owl");
Modified: trunk/examples/mutagenesis/train1.conf
===================================================================
--- trunk/examples/mutagenesis/train1.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/mutagenesis/train1.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("mutagenesis.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/mutagenesis#Compound";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/mutagenesis/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/mutagenesis#Compound";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/mutagenesis/searchTree.log";
+"http://dl-learner.org/mutagenesis#d1"
+"http://dl-learner.org/mutagenesis#d10"
Modified: trunk/examples/mutagenesis/train2.conf
===================================================================
--- trunk/examples/mutagenesis/train2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/mutagenesis/train2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("mutagenesis.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/mutagenesis#Compound";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/mutagenesis/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/mutagenesis#Compound";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/mutagenesis/searchTree.log";
-"http://dl-learner.org/mutagenesis#d1"
-"http://dl-learner.org/mutagenesis#d10"
Modified: trunk/examples/semantic_bible/hasvalue_example.conf
===================================================================
--- trunk/examples/semantic_bible/hasvalue_example.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/hasvalue_example.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,7 +4,7 @@
import("NTNcombined.owl");
-refexamples.useHasValueConstructor = true;
+ocel.useHasValueConstructor = true;
+"http://semanticbible.org/ns/2006/NTNames#Hezron"
+"http://semanticbible.org/ns/2006/NTNames#Jehoshaphat"
Modified: trunk/examples/semantic_bible/hasvalue_simple.conf
===================================================================
--- trunk/examples/semantic_bible/hasvalue_simple.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/hasvalue_simple.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,7 +1,7 @@
import("hasvalue_simple.kb");
reasoner = owlAPIReasoner;
-refexamples.useHasValueConstructor = true;
+ocel.useHasValueConstructor = true;
+a
+b
Modified: trunk/examples/semantic_bible/normal.conf
===================================================================
--- trunk/examples/semantic_bible/normal.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/normal.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -7,13 +7,13 @@
// export("arch.owl");
import("NTNcombined.owl");
-algorithm = refexamples;
-refexamples.useAllConstructor = false;
-refexamples.useNegation = false;
-refexamples.useCardinalityRestrictions = false;
+algorithm = ocel;
+ocel.useAllConstructor = false;
+ocel.useNegation = false;
+ocel.useCardinalityRestrictions = false;
-refexamples.guaranteeXgoodDescriptions = 20;
-//refexamples.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
+ocel.guaranteeXgoodDescriptions = 20;
+//ocel.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
//reasoner = fastInstanceChecker;
reasoner = owlAPIReasoner;
Modified: trunk/examples/semantic_bible/normal_long_retrieval_time.conf
===================================================================
--- trunk/examples/semantic_bible/normal_long_retrieval_time.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/normal_long_retrieval_time.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -7,13 +7,13 @@
// export("arch.owl");
import("NTNcombined.owl");
-algorithm = refexamples;
-refexamples.useAllConstructor = true;
-refexamples.useNegation = true;
-refexamples.useCardinalityRestrictions = true;
+algorithm = ocel;
+ocel.useAllConstructor = true;
+ocel.useNegation = true;
+ocel.useCardinalityRestrictions = true;
-refexamples.guaranteeXgoodDescriptions = 20;
-//refexamples.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
+ocel.guaranteeXgoodDescriptions = 20;
+//ocel.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
//reasoner = fastInstanceChecker;
reasoner = owlAPIReasoner;
Modified: trunk/examples/semantic_bible/sparqlbible.conf
===================================================================
--- trunk/examples/semantic_bible/sparqlbible.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/sparqlbible.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -8,12 +8,12 @@
sparql.predefinedEndpoint = "LOCALJOSEKIBIBLE";
import("lalala","SPARQL");
-algorithm = refexamples;
-refexamples.useAllConstructor = false;
-refexamples.useNegation = false;
-refexamples.useCardinalityRestrictions = false;
-refexamples.guaranteeXgoodDescriptions = 30;
-//refexamples.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
+algorithm = ocel;
+ocel.useAllConstructor = false;
+ocel.useNegation = false;
+ocel.useCardinalityRestrictions = false;
+ocel.guaranteeXgoodDescriptions = 30;
+//ocel.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
//reasoner = fastInstanceChecker;
reasoner = owlAPIReasoner;
Modified: trunk/examples/semantic_bible/woman.conf
===================================================================
--- trunk/examples/semantic_bible/woman.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/semantic_bible/woman.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,13 +4,13 @@
import("NTNcombined.owl");
-algorithm = refexamples;
-refexamples.useAllConstructor = false;
-refexamples.useNegation = false;
-refexamples.useCardinalityRestrictions = false;
+algorithm = ocel;
+ocel.useAllConstructor = false;
+ocel.useNegation = false;
+ocel.useCardinalityRestrictions = false;
-refexamples.guaranteeXgoodDescriptions = 20;
-//refexamples.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
+ocel.guaranteeXgoodDescriptions = 20;
+//ocel.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
reasoner = fastInstanceChecker;
//reasoner = owlAPIReasoner;
Modified: trunk/examples/sparql/Aristotle.conf
===================================================================
--- trunk/examples/sparql/Aristotle.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/Aristotle.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -15,7 +15,7 @@
sparql.predefinedEndpoint = "DBPEDIA";
import("http://dbpedia.org/sparql","SPARQL");
-algorithm = refexamples;
+algorithm = ocel;
reasoner = fastInstanceChecker;
sparql.instances = {
Modified: trunk/examples/sparql/AristotlePos.conf
===================================================================
--- trunk/examples/sparql/AristotlePos.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/AristotlePos.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -16,7 +16,7 @@
import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
-algorithm = refexamples;
+algorithm = ocel;
reasoner = fastInstanceChecker;
// comment this out to enable positive only learning
// problem = posOnlyDefinitionLP;
Modified: trunk/examples/sparql/actors2.conf
===================================================================
--- trunk/examples/sparql/actors2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/actors2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -4,7 +4,7 @@
* Note: DBpedia is always subject to change, solutions will change over time
*/
-refexamples.useAllConstructor = false;
+ocel.useAllConstructor = false;
// recursion depth of extraction algorithm
sparql.recursionDepth = 1;
Modified: trunk/examples/sparql/britishPrimeMinisters.conf
===================================================================
--- trunk/examples/sparql/britishPrimeMinisters.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/britishPrimeMinisters.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -21,16 +21,16 @@
// import("http://139.18.2.37:8890/sparql","SPARQL");
import("http://dbpedia.org/sparql","SPARQL");
-algorithm = refexamples;
+algorithm = ocel;
reasoner = fastInstanceChecker;
-refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = true;
-refexamples.useCardinalityRestrictions = false;
-refexamples.useNegation = false;
-refexamples.maxExecutionTimeInSeconds = 10;
+ocel.useAllConstructor = false;
+ocel.useExistsConstructor = true;
+ocel.useCardinalityRestrictions = false;
+ocel.useNegation = false;
+ocel.maxExecutionTimeInSeconds = 10;
-//refexamples.ignoredConcepts={"http://dbpedia.org/class/yago/Abstainer109758173"};
+//ocel.ignoredConcepts={"http://dbpedia.org/class/yago/Abstainer109758173"};
sparql.instances = {
"http://dbpedia.org/resource/Benjamin_Netanyahu"
Modified: trunk/examples/sparql/govtrack.conf
===================================================================
--- trunk/examples/sparql/govtrack.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/govtrack.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -11,10 +11,10 @@
sparql.saveExtractedFragment = true;
sparql.dissolveBlankNodes = false;
-algorithm = refexamples;
-refexamples.ignoredRoles = { "http://www.w3.org/2002/07/owl#sameAs"};
-refexamples.useHasValueConstructor = true;
-refexamples.valueFrequencyThreshold = 1;
+algorithm = ocel;
+ocel.ignoredRoles = { "http://www.w3.org/2002/07/owl#sameAs"};
+ocel.useHasValueConstructor = true;
+ocel.valueFrequencyThreshold = 1;
reasoner = fastInstanceChecker;
Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/sparql/scrobble.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -23,15 +23,15 @@
sparql.predefinedEndpoint = "MUSICBRAINZ";
sparql.saveExtractedFragment = true;
-algorithm = refexamples;
-refexamples.useNegation = false;
-refexamples.useAllConstructor = false;
-refexamples.useCardinalityRestrictions = false;
-refexamples.maxExecutionTimeInSeconds = 10;
+algorithm = ocel;
+ocel.useNegation = false;
+ocel.useAllConstructor = false;
+ocel.useCardinalityRestrictions = false;
+ocel.maxExecutionTimeInSeconds = 10;
-refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/searchtree.txt";
-// refexamples.replaceSearchTree = true;
+ocel.writeSearchTree = true;
+ocel.searchTreeFile = "log/searchtree.txt";
+// ocel.replaceSearchTree = true;
reasoner = fastInstanceChecker;
Modified: trunk/examples/swore/swore.conf
===================================================================
--- trunk/examples/swore/swore.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/examples/swore/swore.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -10,22 +10,22 @@
import("swore.rdf");
// ignore class for which we want to learn a definition
-refexamples.ignoredConcepts = { "http://ns.softwiki.de/req/Goal" };
+ocel.ignoredConcepts = { "http://ns.softwiki.de/req/Goal" };
// we usually have a configurable minimum accuracy and should set noise to 100 - (min. accuracy)/2
// because min. accuracy is recommended to be 90%, we set the noise value to 5%
-refexamples.noisePercentage = 5;
+ocel.noisePercentage = 5;
// we do not want to terminate when the noise level is reached
-refexamples.terminateOnNoiseReached = false;
+ocel.terminateOnNoiseReached = false;
// maximum execution time should be sufficiently low value (because the user has to wait for the result)
-refexamples.maxExecutionTimeInSeconds = 20;
+ocel.maxExecutionTimeInSeconds = 20;
// negations are penalised, because they are often not desired, e.g.
// $superclass AND NOT $neighbourclass1 AND NOT $neighbourclass2 is
// one of the patterns which is learned but only sometimes/rarely useful
-refexamples.negationPenalty = 2;
+ocel.negationPenalty = 2;
+"http://ns.softwiki.de/req/determineCoreRequirements"
+"http://ns.softwiki.de/req/determineSystemRequirements"
Modified: trunk/interfaces/src/main/java/org/dllearner/cli/ConfMapper.java
===================================================================
--- trunk/interfaces/src/main/java/org/dllearner/cli/ConfMapper.java 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/interfaces/src/main/java/org/dllearner/cli/ConfMapper.java 2011-08-10 14:19:01 UTC (rev 3025)
@@ -105,7 +105,7 @@
learningAlgorithmMapping.put("bruteForce", BruteForceLearner.class);
learningAlgorithmMapping.put("gp", GP.class);
learningAlgorithmMapping.put("refinement", ROLearner.class);
- learningAlgorithmMapping.put("refexamples", OCEL.class);
+// learningAlgorithmMapping.put("refexamples", OCEL.class);
learningAlgorithmMapping.put("ocel", OCEL.class);
learningAlgorithmMapping.put("el", ELLearningAlgorithm.class);
learningAlgorithmMapping.put("disjunctiveEL", ELLearningAlgorithmDisjunctive.class);
Modified: trunk/test/alzheimer/train1.conf
===================================================================
--- trunk/test/alzheimer/train1.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/alzheimer/train1.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("alzheimer.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 15;
-refexamples.startClass = "http://dl-learner.org/alzheimer#Drug";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/alzheimer/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 15;
+ocel.startClass = "http://dl-learner.org/alzheimer#Drug";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/alzheimer/searchTree.log";
-"http://dl-learner.org/alzheimer#b1"
+"http://dl-learner.org/alzheimer#g1"
Modified: trunk/test/alzheimer/train2.conf
===================================================================
--- trunk/test/alzheimer/train2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/alzheimer/train2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("alzheimer.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 15;
-refexamples.startClass = "http://dl-learner.org/alzheimer#Drug";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/alzheimer/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 15;
+ocel.startClass = "http://dl-learner.org/alzheimer#Drug";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/alzheimer/searchTree.log";
+"http://dl-learner.org/alzheimer#e1"
-"http://dl-learner.org/alzheimer#f1"
Modified: trunk/test/alzheimer/train3.conf
===================================================================
--- trunk/test/alzheimer/train3.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/alzheimer/train3.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("alzheimer.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 15;
-refexamples.startClass = "http://dl-learner.org/alzheimer#Drug";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/alzheimer/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 15;
+ocel.startClass = "http://dl-learner.org/alzheimer#Drug";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/alzheimer/searchTree.log";
-"http://dl-learner.org/alzheimer#a1"
-"http://dl-learner.org/alzheimer#b1"
Modified: trunk/test/alzheimer/train4.conf
===================================================================
--- trunk/test/alzheimer/train4.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/alzheimer/train4.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("alzheimer.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 15;
-refexamples.startClass = "http://dl-learner.org/alzheimer#Drug";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/alzheimer/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 15;
+ocel.startClass = "http://dl-learner.org/alzheimer#Drug";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/alzheimer/searchTree.log";
-"http://dl-learner.org/alzheimer#b1"
-"http://dl-learner.org/alzheimer#f1"
Modified: trunk/test/breasttissue/train1.conf
===================================================================
--- trunk/test/breasttissue/train1.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train1.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train2.conf
===================================================================
--- trunk/test/breasttissue/train2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train3.conf
===================================================================
--- trunk/test/breasttissue/train3.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train3.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train4.conf
===================================================================
--- trunk/test/breasttissue/train4.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train4.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train5.conf
===================================================================
--- trunk/test/breasttissue/train5.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train5.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train6.conf
===================================================================
--- trunk/test/breasttissue/train6.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train6.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
+"http://dl-learner.org/breasttissue#Patient102"
+"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/breasttissue/train7.conf
===================================================================
--- trunk/test/breasttissue/train7.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/breasttissue/train7.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("breasttissue.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/breasttissue#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/breasttissue/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/breasttissue#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/breasttissue/searchTree.log";
-"http://dl-learner.org/breasttissue#Patient102"
-"http://dl-learner.org/breasttissue#Patient103"
Modified: trunk/test/cardiotocography/train1.conf
===================================================================
--- trunk/test/cardiotocography/train1.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train1.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
+"http://dl-learner.org/cardiotocography#Patient756"
+"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train10.conf
===================================================================
--- trunk/test/cardiotocography/train10.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train10.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train11.conf
===================================================================
--- trunk/test/cardiotocography/train11.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train11.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
+"http://dl-learner.org/cardiotocography#Patient756"
+"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train12.conf
===================================================================
--- trunk/test/cardiotocography/train12.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train12.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train13.conf
===================================================================
--- trunk/test/cardiotocography/train13.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train13.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train2.conf
===================================================================
--- trunk/test/cardiotocography/train2.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train2.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train3.conf
===================================================================
--- trunk/test/cardiotocography/train3.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train3.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train4.conf
===================================================================
--- trunk/test/cardiotocography/train4.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train4.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train5.conf
===================================================================
--- trunk/test/cardiotocography/train5.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train5.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train6.conf
===================================================================
--- trunk/test/cardiotocography/train6.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train6.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train7.conf
===================================================================
--- trunk/test/cardiotocography/train7.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train7.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train8.conf
===================================================================
--- trunk/test/cardiotocography/train8.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train8.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/cardiotocography/train9.conf
===================================================================
--- trunk/test/cardiotocography/train9.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/cardiotocography/train9.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("cardiotocography.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/cardiotocography#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/cardiotocography/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/cardiotocography#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/cardiotocography/searchTree.log";
-"http://dl-learner.org/cardiotocography#Patient756"
-"http://dl-learner.org/cardiotocography#Patient755"
Modified: trunk/test/heart/train.conf
===================================================================
--- trunk/test/heart/train.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/heart/train.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("heart.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 15;
-refexamples.startClass = "http://dl-learner.org/heart#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/heart/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 15;
+ocel.startClass = "http://dl-learner.org/heart#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/heart/searchTree.log";
+"http://dl-learner.org/heart#Patient240"
-"http://dl-learner.org/heart#Patient242"
Modified: trunk/test/mammographic/train.conf
===================================================================
--- trunk/test/mammographic/train.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/mammographic/train.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,12 +1,12 @@
import("mammographic.owl");
reasoner = fastInstanceChecker;
-// algorithm = refexamples;
-refexamples.noisePercentage = 30;
-refexamples.startClass = "http://dl-learner.org/mammographic#Patient";
-refexamples.writeSearchTree = true;
-// refexamples.replaceSearchTree = true;
-refexamples.searchTreeFile = "log/mammo_ocel_searchTree.log";
+// algorithm = ocel;
+ocel.noisePercentage = 30;
+ocel.startClass = "http://dl-learner.org/mammographic#Patient";
+ocel.writeSearchTree = true;
+// ocel.replaceSearchTree = true;
+ocel.searchTreeFile = "log/mammo_ocel_searchTree.log";
algorithm = celoe;
celoe.noisePercentage = 22;
Modified: trunk/test/parkinsons/train.conf
===================================================================
--- trunk/test/parkinsons/train.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/parkinsons/train.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("parkinsons.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 0;
-refexamples.startClass = "http://dl-learner.org/parkinsons#Patient";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/parkinsons/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 0;
+ocel.startClass = "http://dl-learner.org/parkinsons#Patient";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/parkinsons/searchTree.log";
-"http://dl-learner.org/parkinsons#phon_R01_S39_6"
-"http://dl-learner.org/parkinsons#phon_R01_S39_5"
Modified: trunk/test/suramin/train.conf
===================================================================
--- trunk/test/suramin/train.conf 2011-08-10 13:54:06 UTC (rev 3024)
+++ trunk/test/suramin/train.conf 2011-08-10 14:19:01 UTC (rev 3025)
@@ -1,11 +1,11 @@
import("suramin.owl");
reasoner = fastInstanceChecker;
-algorithm = refexamples;
-refexamples.noisePercentage = 31;
-refexamples.startClass = "http://dl-learner.org/suramin#Compound";
-refexamples.writeSearchTree = false;
-refexamples.searchTreeFile = "log/suramin/searchTree.log";
+algorithm = ocel;
+ocel.noisePercentage = 31;
+ocel.startClass = "http://dl-learner.org/suramin#Compound";
+ocel.writeSearchTree = false;
+ocel.searchTreeFile = "log/suramin/searchTree.log";
-"http://dl-learner.org/suramin#cpd0"
-"http://dl-learner.org/suramin#cpd1"
Modified: trunk/test/testCaseSPARQLDescri...
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