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[DL-Learner SVN] SF.net SVN: dl-learner:[2996] trunk
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From: <jen...@us...> - 2011-08-04 14:15:52
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Revision: 2996
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=2996&view=rev
Author: jenslehmann
Date: 2011-08-04 14:15:46 +0000 (Thu, 04 Aug 2011)
Log Message:
-----------
ctd. evaluation script, including database connection
Modified Paths:
--------------
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/DisjointPropertyAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/EquivalentPropertyAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/FunctionalPropertyAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyDomainAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyRangeAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/ReflexivePropertyAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/SymmetricPropertyAxiomLearner.java
trunk/components-core/src/main/java/org/dllearner/algorithms/properties/TransitivePropertyAxiomLearner.java
trunk/scripts/pom.xml
trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java
Added Paths:
-----------
trunk/scripts/db_settings.ini.dist
Property Changed:
----------------
trunk/scripts/
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/DisjointPropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/DisjointPropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/DisjointPropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -4,12 +4,14 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.configurators.Configurator;
import org.dllearner.core.owl.Axiom;
import org.dllearner.kb.SparqlEndpointKS;
+@ComponentAnn(name="disjoint property axiom learner")
public class DisjointPropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private String propertyToDescribe;
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/EquivalentPropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/EquivalentPropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/EquivalentPropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -4,12 +4,14 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.configurators.Configurator;
import org.dllearner.core.owl.Axiom;
import org.dllearner.kb.SparqlEndpointKS;
+@ComponentAnn(name="equivalent property axiom learner")
public class EquivalentPropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private String propertyToDescribe;
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/FunctionalPropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/FunctionalPropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/FunctionalPropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -6,6 +6,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -26,6 +27,7 @@
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
import com.hp.hpl.jena.vocabulary.OWL;
+@ComponentAnn(name="functional property axiom learner")
public class FunctionalPropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(FunctionalPropertyAxiomLearner.class);
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyDomainAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyDomainAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyDomainAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -16,6 +16,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -39,6 +40,7 @@
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
+@ComponentAnn(name="property domain axiom learner")
public class PropertyDomainAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(PropertyDomainAxiomLearner.class);
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyRangeAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyRangeAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/PropertyRangeAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -14,6 +14,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -36,6 +37,7 @@
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
+@ComponentAnn(name="property range learner")
public class PropertyRangeAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(PropertyRangeAxiomLearner.class);
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/ReflexivePropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/ReflexivePropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/ReflexivePropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -6,6 +6,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -26,6 +27,7 @@
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
import com.hp.hpl.jena.vocabulary.OWL2;
+@ComponentAnn(name="reflexive property learner")
public class ReflexivePropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(ReflexivePropertyAxiomLearner.class);
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/SymmetricPropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/SymmetricPropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/SymmetricPropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -6,6 +6,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -26,6 +27,7 @@
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
import com.hp.hpl.jena.vocabulary.OWL2;
+@ComponentAnn(name="symmetric property learner")
public class SymmetricPropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(SymmetricPropertyAxiomLearner.class);
Modified: trunk/components-core/src/main/java/org/dllearner/algorithms/properties/TransitivePropertyAxiomLearner.java
===================================================================
--- trunk/components-core/src/main/java/org/dllearner/algorithms/properties/TransitivePropertyAxiomLearner.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/components-core/src/main/java/org/dllearner/algorithms/properties/TransitivePropertyAxiomLearner.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -6,6 +6,7 @@
import org.dllearner.core.AxiomLearningAlgorithm;
import org.dllearner.core.AbstractComponent;
+import org.dllearner.core.ComponentAnn;
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.config.ConfigOption;
@@ -27,6 +28,7 @@
import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
import com.hp.hpl.jena.vocabulary.OWL;
+@ComponentAnn(name="transitive property learner")
public class TransitivePropertyAxiomLearner extends AbstractComponent implements AxiomLearningAlgorithm {
private static final Logger logger = LoggerFactory.getLogger(TransitivePropertyAxiomLearner.class);
Property changes on: trunk/scripts
___________________________________________________________________
Modified: svn:ignore
- target
log
scripts.iml
.classpath
.project
.settings
+ target
log
scripts.iml
.classpath
.project
.settings
db_settings.ini
Added: trunk/scripts/db_settings.ini.dist
===================================================================
--- trunk/scripts/db_settings.ini.dist (rev 0)
+++ trunk/scripts/db_settings.ini.dist 2011-08-04 14:15:46 UTC (rev 2996)
@@ -0,0 +1,9 @@
+[database]
+; the server, where the mysql database is located
+server = localhost
+; the user, that has rights to access the navigator database
+user = username
+; the password of that user
+pass = password
+; the name of the used database
+name = database_name
\ No newline at end of file
Modified: trunk/scripts/pom.xml
===================================================================
--- trunk/scripts/pom.xml 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/scripts/pom.xml 2011-08-04 14:15:46 UTC (rev 2996)
@@ -55,5 +55,9 @@
<groupId>org.aksw.commons</groupId>
<artifactId>sparql</artifactId>
</dependency>
+ <dependency>
+ <groupId>mysql</groupId>
+ <artifactId>mysql-connector-java</artifactId>
+ </dependency>
</dependencies>
</project>
Modified: trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java
===================================================================
--- trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java 2011-08-04 14:12:59 UTC (rev 2995)
+++ trunk/scripts/src/main/java/org/dllearner/scripts/evaluation/EnrichmentEvaluation.java 2011-08-04 14:15:46 UTC (rev 2996)
@@ -19,15 +19,31 @@
*/
package org.dllearner.scripts.evaluation;
+import java.io.FileNotFoundException;
+import java.io.FileReader;
+import java.io.IOException;
import java.lang.reflect.InvocationTargetException;
+import java.sql.Connection;
+import java.sql.DriverManager;
+import java.sql.PreparedStatement;
+import java.sql.SQLException;
import java.util.LinkedList;
import java.util.List;
import java.util.Set;
import java.util.TreeSet;
+import java.util.prefs.Preferences;
import org.apache.log4j.Logger;
+import org.dllearner.algorithms.properties.DisjointPropertyAxiomLearner;
+import org.dllearner.algorithms.properties.EquivalentPropertyAxiomLearner;
+import org.dllearner.algorithms.properties.FunctionalPropertyAxiomLearner;
+import org.dllearner.algorithms.properties.PropertyDomainAxiomLearner;
+import org.dllearner.algorithms.properties.PropertyRangeAxiomLearner;
import org.dllearner.algorithms.properties.SubPropertyOfAxiomLearner;
+import org.dllearner.algorithms.properties.SymmetricPropertyAxiomLearner;
+import org.dllearner.algorithms.properties.TransitivePropertyAxiomLearner;
import org.dllearner.core.AxiomLearningAlgorithm;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.EvaluatedAxiom;
import org.dllearner.core.LearningAlgorithm;
@@ -36,6 +52,8 @@
import org.dllearner.kb.SparqlEndpointKS;
import org.dllearner.kb.sparql.SparqlEndpoint;
import org.dllearner.kb.sparql.SparqlQuery;
+import org.ini4j.IniPreferences;
+import org.ini4j.InvalidFileFormatException;
import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.ResultSet;
@@ -62,16 +80,79 @@
private int maxDataProperties = 3;
private int maxClasses = 3;
private List<Class<? extends AxiomLearningAlgorithm>> objectPropertyAlgorithms;
+ private List<Class<? extends AxiomLearningAlgorithm>> dataPropertyAlgorithms;
+ private PreparedStatement ps;
public EnrichmentEvaluation() {
+ initDBConnection();
+
objectPropertyAlgorithms = new LinkedList<Class<? extends AxiomLearningAlgorithm>>();
+// objectPropertyAlgorithms.add(DisjointPropertyAxiomLearner.class);
+// objectPropertyAlgorithms.add(EquivalentPropertyAxiomLearner.class);
+ objectPropertyAlgorithms.add(FunctionalPropertyAxiomLearner.class);
+ objectPropertyAlgorithms.add(PropertyDomainAxiomLearner.class);
+ objectPropertyAlgorithms.add(PropertyRangeAxiomLearner.class);
objectPropertyAlgorithms.add(SubPropertyOfAxiomLearner.class);
+ objectPropertyAlgorithms.add(SymmetricPropertyAxiomLearner.class);
+ objectPropertyAlgorithms.add(TransitivePropertyAxiomLearner.class);
+ dataPropertyAlgorithms = new LinkedList<Class<? extends AxiomLearningAlgorithm>>();
+// dataPropertyAlgorithms.add(DisjointPropertyAxiomLearner.class);
+// dataPropertyAlgorithms.add(EquivalentPropertyAxiomLearner.class);
+ dataPropertyAlgorithms.add(FunctionalPropertyAxiomLearner.class);
+ dataPropertyAlgorithms.add(PropertyDomainAxiomLearner.class);
+ dataPropertyAlgorithms.add(PropertyRangeAxiomLearner.class); // ?
+ dataPropertyAlgorithms.add(SubPropertyOfAxiomLearner.class);
}
- public void start() throws IllegalArgumentException, SecurityException, InstantiationException, IllegalAccessException, InvocationTargetException, NoSuchMethodException {
+ private void initDBConnection(){
+ try {
+ String iniFile = "db_settings.ini";
+ Preferences prefs = new IniPreferences(new FileReader(iniFile));
+ String dbServer = prefs.node("database").get("server", null);
+ String dbName = "enrichment";
+ String dbUser = prefs.node("database").get("user", null);
+ String dbPass = prefs.node("database").get("pass", null);
+
+ Class.forName("com.mysql.jdbc.Driver");
+ String url =
+ "jdbc:mysql://"+dbServer+"/"+dbName;
+ Connection conn = DriverManager.getConnection(url, dbUser, dbPass);
+ ps = conn.prepareStatement("INSERT INTO evaluation (" +
+ "entity, algorithm, axiom, score ) " +
+ "VALUES(?,?,?,?)");
+ } catch (ClassNotFoundException e) {
+ e.printStackTrace();
+ } catch (SQLException e) {
+ e.printStackTrace();
+ } catch (InvalidFileFormatException e) {
+ e.printStackTrace();
+ } catch (FileNotFoundException e) {
+ e.printStackTrace();
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+ }
+
+ private void writeToDB(
+ String entity, String algorithm, String axiom, double score){
+ try {
+ ps.setString(1, entity);
+ ps.setString(2, algorithm);
+ ps.setString(3, axiom);
+ ps.setDouble(4, score);
+
+ ps.executeUpdate();
+ } catch (SQLException e) {
+ logger.error("Error while writing to DB.",e);
+ e.printStackTrace();
+ }
+ }
+
+ public void start() throws IllegalArgumentException, SecurityException, InstantiationException, IllegalAccessException, InvocationTargetException, NoSuchMethodException, ComponentInitException {
+
ComponentManager cm = ComponentManager.getInstance();
// create DBpedia Live knowledge source
@@ -80,6 +161,7 @@
Set<ObjectProperty> properties = getAllObjectProperties(se);
SparqlEndpointKS ks = new SparqlEndpointKS(se);
+ ks.init();
for(Class<? extends AxiomLearningAlgorithm> algorithmClass : objectPropertyAlgorithms) {
int objectProperties = 0;
@@ -88,15 +170,20 @@
// dynamically invoke constructor with SPARQL knowledge source
AxiomLearningAlgorithm learner = algorithmClass.getConstructor(SparqlEndpointKS.class).newInstance(ks);
ConfigHelper.configure(learner, "propertyToDescribe", property.toString());
- ConfigHelper.configure(learner, "maxExecutionTimeInSeconds", maxExecutionTimeInSeconds);
+ ConfigHelper.configure(learner, "maxExecutionTimeInSeconds", maxExecutionTimeInSeconds);
+ learner.init();
// learner.setPropertyToDescribe(property);
// learner.setMaxExecutionTimeInSeconds(10);
- System.out.println("Applying " + ComponentManager.getName(learner) + " on " + property + " ... ");
+ String algName = ComponentManager.getName(learner);
+ System.out.println("Applying " + algName + " on " + property + " ... ");
learner.start();
List<EvaluatedAxiom> learnedAxioms = learner.getCurrentlyBestEvaluatedAxioms(nrOfAxiomsToLearn);
- for(EvaluatedAxiom learnedAxiom : learnedAxioms) {
- // TODO: put this in some data structure
- System.out.println(learnedAxiom);
+ if(learnedAxioms == null) {
+ writeToDB(property.toString(), algName, "NULL", 0);
+ } else {
+ for(EvaluatedAxiom learnedAxiom : learnedAxioms) {
+ writeToDB(property.toString(), algName, learnedAxiom.getAxiom().toString(), learnedAxiom.getScore().getAccuracy());
+ }
}
objectProperties++;
if(objectProperties > maxObjectProperties) {
@@ -133,7 +220,7 @@
}
- public static void main(String[] args) throws IllegalArgumentException, SecurityException, InstantiationException, IllegalAccessException, InvocationTargetException, NoSuchMethodException {
+ public static void main(String[] args) throws IllegalArgumentException, SecurityException, InstantiationException, IllegalAccessException, InvocationTargetException, NoSuchMethodException, ComponentInitException {
EnrichmentEvaluation ee = new EnrichmentEvaluation();
ee.start();
ee.printResultsPlain();
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