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[DL-Learner SVN] SF.net SVN: dl-learner:[2599] trunk/test
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From: <km...@us...> - 2011-01-11 23:06:30
|
Revision: 2599
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=2599&view=rev
Author: kmpf
Date: 2011-01-11 23:06:20 +0000 (Tue, 11 Jan 2011)
Log Message:
-----------
Added Paths:
-----------
trunk/test/pdb/
trunk/test/pdb/AA_properties.owl
Added: trunk/test/pdb/AA_properties.owl
===================================================================
--- trunk/test/pdb/AA_properties.owl (rev 0)
+++ trunk/test/pdb/AA_properties.owl 2011-01-11 23:06:20 UTC (rev 2599)
@@ -0,0 +1,1474 @@
+<?xml version="1.0"?>
+
+
+<!DOCTYPE rdf:RDF [
+ <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
+ <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
+ <!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
+ <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
+ <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
+ <!ENTITY AA_properties "http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#" >
+]>
+
+
+<rdf:RDF xmlns="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#"
+ xml:base="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:AA_properties="http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#">
+ <owl:Ontology rdf:about=""/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Object Properties
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#relational_property -->
+
+ <owl:ObjectProperty rdf:about="#relational_property">
+ <rdfs:label
+ >relational_property</rdfs:label>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#modifier_property -->
+
+ <owl:ObjectProperty rdf:about="#modifier_property">
+ <rdfs:label
+ >modifier_property</rdfs:label>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_hydrophobicity -->
+
+ <owl:ObjectProperty rdf:about="#has_hydrophobicity">
+ <rdfs:label
+ >has_hydrophobicity</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_size -->
+
+ <owl:ObjectProperty rdf:about="#has_size">
+ <rdfs:label>has_size</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_polarity -->
+
+ <owl:ObjectProperty rdf:about="#has_polarity">
+ <rdfs:label>c</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_aromaticity -->
+
+ <owl:ObjectProperty rdf:about="#has_aromaticity">
+ <rdfs:label>has_aromaticity</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#has_charge -->
+
+ <owl:ObjectProperty rdf:about="#has_charge">
+ <rdfs:label>has_charge</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#is_in_hydrogen_bond -->
+
+ <owl:ObjectProperty rdf:about="#is_in_hydrogen_bond">
+ <rdfs:label
+ >is_in_hydrogen_bond</rdfs:label>
+ <rdfs:subPropertyOf rdf:resource="#modifier_property"/>
+ </owl:ObjectProperty>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Classes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Domain_entity -->
+
+ <owl:Class rdf:about="#Domain_entity">
+ <rdfs:label>Domain_entity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="&owl;Thing"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Independent_entity -->
+
+ <owl:Class rdf:about="#Independent_entity">
+ <rdfs:label
+ >Independent_entity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Domain_entity"/>
+ <owl:disjointWith rdf:resource="#Value"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Value -->
+
+ <owl:Class rdf:about="#Value">
+ <rdfs:label>Value</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Domain_entity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Amino_acid -->
+
+ <owl:Class rdf:about="#Amino_acid">
+ <rdfs:label>Amino_acid</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Independent_entity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Alanine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Alanine">
+ <rdfs:label>Alanine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="#small"/>
+ <rdf:Description rdf:about="#tiny"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#tiny"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Arginine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Arginine">
+ <rdfs:label>Arginine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#positive_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Asparagine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Asparagine">
+ <rdfs:label>Asparagine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Aspartic_acid -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Aspartic_acid">
+ <rdfs:label>Aspartic_acid</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#negative_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Cysteine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Cysteine">
+ <rdfs:label>Cysteine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glutamic_acid -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Glutamic_acid">
+ <rdfs:label>Glutamic_acid</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#negative_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glutamine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Glutamine">
+ <rdfs:label>Glutamine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Glycine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Glycine">
+ <rdfs:label>Glycine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#tiny"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Histidine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Histidine">
+ <rdfs:label>Histidine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#positive_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Isoleucine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Isoleucine">
+ <rdfs:label>Isoleucine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Leucine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Leucine">
+ <rdfs:label>Leucine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Lysine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Lysine">
+ <rdfs:label>Lysine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#positive_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Methionine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Methionine">
+ <rdfs:label>Methionine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Phenylalanine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Phenylalanine">
+ <rdfs:label>Phenylalanine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Proline -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Proline">
+ <rdfs:label>Proline</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Serine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Serine">
+ <rdfs:label>Serine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#tiny"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophilic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Threonine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Threonine">
+ <rdfs:label>Threonine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Tryptophan -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Tryptophan">
+ <rdfs:label>Tryptophan</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Tyrosine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Tyrosine">
+ <rdfs:label>Tyrosine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#polar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_acceptor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#large"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#is_in_hydrogen_bond"/>
+ <owl:someValuesFrom rdf:resource="#hydrogen_bond_donor"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Valine -->
+
+ <owl:Class rdf:about="http://bio2rdf.org/pdb:Valine">
+ <rdfs:label>Valine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Amino_acid"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#aliphatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_hydrophobicity"/>
+ <owl:someValuesFrom rdf:resource="#very_hydrophobic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_charge"/>
+ <owl:someValuesFrom rdf:resource="#neutral_charge"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_size"/>
+ <owl:someValuesFrom rdf:resource="#small"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_polarity"/>
+ <owl:someValuesFrom rdf:resource="#unpolar"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="#has_aromaticity"/>
+ <owl:someValuesFrom rdf:resource="#not_aromatic"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Side_chain_property -->
+
+ <owl:Class rdf:about="#Side_chain_property">
+ <rdfs:label
+ >Side_chain_property</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Value"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#hydrophobic -->
+
+ <owl:Class rdf:about="#hydrophobic">
+ <rdfs:label>hydrophobic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Hydrophobicity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#very_hydrophobic -->
+
+ <owl:Class rdf:about="#very_hydrophobic">
+ <rdfs:label
+ >very_hydrophobic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Hydrophobicity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#hydrophilic -->
+
+ <owl:Class rdf:about="#hydrophilic">
+ <rdfs:label>hydrophilic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Hydrophobicity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#positive_charge -->
+
+ <owl:Class rdf:about="#positive_charge">
+ <rdfs:label>positive_charge</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Charge"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#negative_charge -->
+
+ <owl:Class rdf:about="#negative_charge">
+ <rdfs:label>negative_charge</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Charge"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#neutral_charge -->
+
+ <owl:Class rdf:about="#neutral_charge">
+ <rdfs:label>neutral_charge</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Charge"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#large -->
+
+ <owl:Class rdf:about="#large">
+ <rdfs:label>large</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Size"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#small -->
+
+ <owl:Class rdf:about="#small">
+ <rdfs:label>small</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Size"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#tiny -->
+
+ <owl:Class rdf:about="#tiny">
+ <rdfs:label>tiny</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Size"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#aliphatic -->
+
+ <owl:Class rdf:about="#aliphatic">
+ <rdfs:label>aliphatic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Aromaticity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#aromatic -->
+
+ <owl:Class rdf:about="#aromatic">
+ <rdfs:label>aromatic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Aromaticity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#hydrogen_bond_donor -->
+
+ <owl:Class rdf:about="#hydrogen_bond_donor">
+ <rdfs:label
+ >hydrogen_bond_donor</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Hydrogen_bonding"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#hydrogen_bond_acceptor -->
+
+ <owl:Class rdf:about="#hydrogen_bond_acceptor">
+ <rdfs:label
+ >hydrogen_bond_acceptor</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Hydrogen_bonding"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#not_aromatic -->
+
+ <owl:Class rdf:about="#not_aromatic">
+ <rdfs:label>not_aromatic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Aromaticity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Hydrophobicity -->
+
+ <owl:Class rdf:about="#Hydrophobicity">
+ <rdfs:label>Hydrophobicity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Polarity -->
+
+ <owl:Class rdf:about="#Polarity">
+ <rdfs:label>Polarity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Size -->
+
+ <owl:Class rdf:about="#Size">
+ <rdfs:label>Size</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Aromaticity -->
+
+ <owl:Class rdf:about="#Aromaticity">
+ <rdfs:label>Aromaticity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Hydrogen_bonding -->
+
+ <owl:Class rdf:about="#Hydrogen_bonding">
+ <rdfs:label
+ >Hydrogen_bonding</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#not_aliphatic -->
+
+ <owl:Class rdf:about="#not_aliphatic">
+ <rdfs:label>not_aliphatic</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Aromaticity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#Charge -->
+
+ <owl:Class rdf:about="#Charge">
+ <rdfs:label>Charge</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Side_chain_property"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#polar -->
+
+ <owl:Class rdf:about="#polar">
+ <rdfs:label>polar</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Polarity"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/Projects/DLLearner/Protein_Secondary_Structure_Prediction/AA_properties.owl#unpolar -->
+
+ <owl:Class rdf:about="#unpolar">
+ <rdfs:label>unpolar</rdfs:label>
+ <rdfs:subClassOf rdf:resource="#Polarity"/>
+ </owl:Class>
+
+
+
+ <!-- http://www.w3.org/2002/07/owl#Thing -->
+
+ <owl:Class rdf:about="&owl;Thing"/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // General axioms
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+ <rdf:Description>
+ <rdf:type rdf:resource="&owl;AllDisjointClasses"/>
+ <owl:members rdf:parseType="Collection">
+ <rdf:Description rdf:about="#Hydrophobicity"/>
+ <rdf:Description rdf:about="#Polarity"/>
+ <rdf:Description rdf:about="#Size"/>
+ <rdf:Description rdf:about="#Aromaticity"/>
+ <rdf:Description rdf:about="#Hydrogen_bonding"/>
+ </owl:members>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type rdf:resource="&owl;AllDisjointClasses"/>
+ <owl:members rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Alanine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Arginine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Asparagine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Aspartic_acid"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Cysteine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Glutamic_acid"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Glutamine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Glycine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Histidine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Isoleucine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Leucine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Lysine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Methionine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Phenylalanine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Proline"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Serine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Threonine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Tryptophan"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Tyrosine"/>
+ <rdf:Description rdf:about="http://bio2rdf.org/pdb:Valine"/>
+ </owl:members>
+ </rdf:Description>
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 2.2.1.1138) http://owlapi.sourceforge.net -->
+
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