Revision: 2145 http://dl-learner.svn.sourceforge.net/dl-learner/?rev=2145&view=rev Author: lorenz_b Date: 2010-05-14 16:02:25 +0000 (Fri, 14 May 2010) Log Message: ----------- Fixed some bugs in reasoner classes. Fixed bug in RhoDRDown class, caused by missing comparator in TreeSet construction. Modified Paths: -------------- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java trunk/src/dl-learner/org/dllearner/reasoning/PelletReasoner.java trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java trunk/src/dl-learner/org/dllearner/scripts/evaluation/OntologyChecker.java trunk/src/dl-learner/org/dllearner/test/junit/ReasonerTests.java Added Paths: ----------- trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_errors.txt trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_list.txt trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_ontologies_output.txt trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_tractable.txt Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java =================================================================== --- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2010-05-04 20:36:49 UTC (rev 2144) +++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2010-05-14 16:02:25 UTC (rev 2145) @@ -243,6 +243,7 @@ ontology = ((OWLAPIOntology)source).getOWLOntolgy(); } else if (source instanceof SparqlKnowledgeSource) { ontology = ((SparqlKnowledgeSource)source).getOWLAPIOntology(); + manager = ontology.getOWLOntologyManager(); } else { ontology = manager.loadOntologyFromOntologyDocument(IRI.create(url.toURI())); } @@ -629,6 +630,9 @@ if (set.isEmpty()) return new Thing(); OWLClass oc = set.iterator().next().getRepresentativeElement(); + if(oc.isOWLThing()){ + return Thing.instance; + } return new NamedClass(oc.toStringID()); } Modified: trunk/src/dl-learner/org/dllearner/reasoning/PelletReasoner.java =================================================================== --- trunk/src/dl-learner/org/dllearner/reasoning/PelletReasoner.java 2010-05-04 20:36:49 UTC (rev 2144) +++ trunk/src/dl-learner/org/dllearner/reasoning/PelletReasoner.java 2010-05-14 16:02:25 UTC (rev 2145) @@ -109,7 +109,6 @@ import com.clarkparsia.modularity.IncrementalClassifier; import com.clarkparsia.modularity.PelletIncremantalReasonerFactory; import com.clarkparsia.pellet.owlapiv3.PelletReasonerFactory; -import com.clarkparsia.pellet.owlapiv3.Reasoner; public class PelletReasoner extends ReasonerComponent { @@ -477,8 +476,8 @@ if (source instanceof OWLAPIOntology) { ontology = ((OWLAPIOntology) source).getOWLOntolgy(); } else if (source instanceof SparqlKnowledgeSource) { - ontology = ((SparqlKnowledgeSource) source) - .getOWLAPIOntology(); + ontology = ((SparqlKnowledgeSource) source).getOWLAPIOntology(); + manager = ontology.getOWLOntologyManager(); } else { try { ontology = manager.loadOntologyFromOntologyDocument(IRI.create(url @@ -1256,12 +1255,12 @@ @Override public Description getDomainImpl(ObjectProperty objectProperty) { OWLObjectProperty prop = OWLAPIConverter.getOWLAPIObjectProperty(objectProperty); - - // Pellet returns a set of sets of named class, which are more - // general than the actual domain/range - NodeSet<OWLClass> set = reasoner.getObjectPropertyDomains(prop, false); - return getDescriptionFromReturnedDomain(set); - + + // Pellet returns a set of sets of named class, which are more + // general than the actual domain/range + NodeSet<OWLClass> set = reasoner.getObjectPropertyDomains(prop, false); + return getDescriptionFromReturnedDomain(set); + } @Override @@ -1283,7 +1282,7 @@ if (set.isEmpty()) return new Thing(); OWLClass oc = set.iterator().next().getRepresentativeElement(); - return new NamedClass(oc.toStringID()); + return getDescriptionFromReturnedDomain(set); } @@ -1670,5 +1669,8 @@ return definitions; } + public static String getName() { + return "Pellet reasoner"; + } } Modified: trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java =================================================================== --- trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2010-05-04 20:36:49 UTC (rev 2144) +++ trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2010-05-14 16:02:25 UTC (rev 2145) @@ -1222,7 +1222,7 @@ } private SortedSet<Description> getNegClassCandidatesRecursive(Description index, Description lowerClass) { - SortedSet<Description> candidates = new TreeSet<Description>(); + SortedSet<Description> candidates = new TreeSet<Description>(conceptComparator); for(Description candidate : subHierarchy.getSuperClasses(lowerClass)) { if(!isDisjoint(new Negation(candidate),index)) { Modified: trunk/src/dl-learner/org/dllearner/scripts/evaluation/OntologyChecker.java =================================================================== --- trunk/src/dl-learner/org/dllearner/scripts/evaluation/OntologyChecker.java 2010-05-04 20:36:49 UTC (rev 2144) +++ trunk/src/dl-learner/org/dllearner/scripts/evaluation/OntologyChecker.java 2010-05-14 16:02:25 UTC (rev 2145) @@ -148,7 +148,7 @@ System.out.println(inconsistentOntologies.size() + " inconsistent ontologies:"); int cnt = 1; for(String uri : inconsistentOntologies){ - System.out.println(uri); + System.out.println(cnt++ + ": " + uri); } System.out.println(); System.out.println(incohaerentOntologies.size() + " incohaerent ontologies(#unsatisfiable classes):"); Added: trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_errors.txt =================================================================== --- trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_errors.txt (rev 0) +++ trunk/src/dl-learner/org/dllearner/scripts/evaluation/tones_errors.txt 2010-05-14 16:02:25 UTC (rev 2145) @@ -0,0 +1,42 @@ +http://owl.cs.manchester.ac.uk/repository/download?ontology=ftp://rgd.mcw.edu/pub/data_release/pathway.obo&format=RDF/XML +http://owl.cs.manchester.ac.uk/repository/download?ontology=http://PCS.owl&format=RDF/XML +http://owl.cs.manchester.ac.uk/repository/download?ontology=http://attempto.ifi.uzh.ch/ontologies/owlswrl/test&format=RDF/XML 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