Menu
▾
▴
[DL-Learner SVN] SF.net SVN: dl-learner:[1920] trunk/src/dl-learner/org/dllearner/tools/ protege
|
From: <hee...@us...> - 2009-11-25 10:59:23
|
Revision: 1920
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1920&view=rev
Author: heeroyuy
Date: 2009-11-25 10:59:10 +0000 (Wed, 25 Nov 2009)
Log Message:
-----------
-fixed bug that individuals in some classes where not recognized
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerView.java
trunk/src/dl-learner/org/dllearner/tools/protege/GraphicalCoveragePanel.java
trunk/src/dl-learner/org/dllearner/tools/protege/ReadingOntologyThread.java
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2009-11-25 10:57:13 UTC (rev 1919)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2009-11-25 10:59:10 UTC (rev 1920)
@@ -148,13 +148,21 @@
}
}
if (z.toString().contains(HELP_BUTTON_STRING)) {
- String helpText = "<html><font size=\"3\">What does a sentence like 'Learning started. Currently searching class expressions with length between 4 and 7.' mean?<br>"
- + "Length: In Manchester OWL Syntax (the syntax used for class expressions in Protege), we define length simply as the number of words needed to write down the class expression.<br><br>"
- + "The learning algorithm (called CELOE) for suggesting class expressions starts with the most general expression owl:Thing and then further specializes it.<br>"
- + "Those class expressions, which fit the existing instances of a given class ($currentClass in this case) get a high accuracy and are displayed as suggestions.<br>"
- + "The learning algorithm prefers short expressions. 'Currently searching class expressions with length between 4 and 7.' means that it has already evaluated all class expressions of length 1 to 3<br>"
- + "or excluded them as possible suggestions. All the expressions currently evaluated have length between 4 and 7. If you want to search for longer expressions, then you have to increase<br>"
- + "the maximum runtime setting (it is set to $defaultRuntime seconds by default).<br><br>"
+
+ Set<String> uris = model.getOntologyURIString();
+ String currentClass = "";
+ for(String uri : uris) {
+ if(model.getCurrentConcept().toString().contains(uri)) {
+ currentClass = model.getCurrentConcept().toManchesterSyntaxString(uri, null);
+ }
+ }
+ String helpText = "<html><font size=\"3\">What does a sentence like 'Learning started. Currently searching class expressions with length between 4 and 7.' mean?<br><br>"
+ + "Length: In Manchester OWL Syntax (the syntax used for class expressions in Protege), we define length <br>simply as the number of words needed to write down the class expression.<br><br>"
+ + "The learning algorithm (called CELOE) for suggesting class expressions starts with the most general expression <br>owl:Thing and then further specializes it.<br>"
+ + "Those class expressions, which fit the existing instances of a given class (" + currentClass + " in this case) get <br>a high accuracy and are displayed as suggestions.<br>"
+ + "The learning algorithm prefers short expressions. 'Currently searching class expressions with length between 4 and 7.' <br>means that it has already evaluated all class expressions of length 1 to 3<br>"
+ + "or excluded them as possible suggestions. All the expressions currently evaluated have length between 4 and 7. If you <br>want to search for longer expressions, then you have to increase<br>"
+ + "the maximum runtime setting (it is set to " + view.getPosAndNegSelectPanel().getOptionPanel().getMaxExecutionTime() + " <br>seconds by default).<br><br>"
+ "See <a href=\"http://dl-learner.org/wiki/ProtegePlugin\">Protege Plugin Wiki</a> for more details.</font></html>";
help = new JTextPane();
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerView.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerView.java 2009-11-25 10:57:13 UTC (rev 1919)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerView.java 2009-11-25 10:59:10 UTC (rev 1920)
@@ -516,7 +516,7 @@
String message = "<html><font size=\"3\" color=\"black\">Learning successful. All expressions up to length " + (celoe.getMinimumHorizontalExpansion()-1) + " and some expressions up to <br>length " + celoe.getMaximumHorizontalExpansion() + " searched.";
hint.setForeground(Color.RED);
if(isInconsistent) {
- message +="<font size=\"3\" color=\"red\"><br>Class expressions marked red will lead to an inconsistent ontology. <br>Please double click on them to view detail information.</font></html>";
+ message +="<font size=\"3\" color=\"red\"><br>Class expressions marked red will lead to an inconsistent ontology. <br>Please click on them to view detail information.</font></html>";
} else {
message +="<br>To view details about why a class expression was suggested, please click on it.</font><html>";
}
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/GraphicalCoveragePanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/GraphicalCoveragePanel.java 2009-11-25 10:57:13 UTC (rev 1919)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/GraphicalCoveragePanel.java 2009-11-25 10:59:10 UTC (rev 1920)
@@ -164,7 +164,7 @@
Ellipse2D circlePoint = new Ellipse2D.Double(315 - 1, p - 6, 4, 4);
g2D.fill(circlePoint);
g2D.setColor(Color.BLACK);
- g2D.drawString("individuals covered by", 320, p);
+ g2D.drawString("<html>individuals covered by", 320, p);
g2D.setColor(Color.ORANGE);
g2D.fillOval(455, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
@@ -173,51 +173,51 @@
g2D.fillOval(525, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
p = p + 20;
- g2D.drawString("(OK)", 320, p);
+ g2D.drawString("(OK)</html>", 320, p);
p = p + 20;
if(id.equals(EQUI_STRING)) {
g2D.setColor(darkRed);
Ellipse2D circlePoint2 = new Ellipse2D.Double(315 - 1, p - 6, 4, 4);
g2D.fill(circlePoint2);
g2D.setColor(Color.BLACK);
- g2D.drawString("individuals covered by", 320, p);
+ g2D.drawString("<html>individuals covered by", 320, p);
g2D.setColor(Color.ORANGE);
g2D.fillOval(455, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
p = p + 20;
- g2D.drawString("(potential problem)", 320, p);
+ g2D.drawString("(potential problem)</html>", 320, p);
p = p + 20;
g2D.setColor(darkRed);
Ellipse2D circlePoint3 = new Ellipse2D.Double(315 - 1, p - 6, 4, 4);
g2D.fill(circlePoint3);
g2D.setColor(Color.BLACK);
- g2D.drawString("individuals covered by", 320, p);
+ g2D.drawString("<html>individuals covered by", 320, p);
g2D.setColor(Color.YELLOW);
g2D.fillOval(455, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
p = p + 20;
- g2D.drawString("(potential problem)", 320, p);
+ g2D.drawString("(potential problem)</html>", 320, p);
} else {
g2D.setColor(Color.BLACK);
Ellipse2D circlePoint2 = new Ellipse2D.Double(315 - 1, p - 6, 4, 4);
g2D.fill(circlePoint2);
- g2D.drawString("individuals covered by", 320, p);
+ g2D.drawString("<html>individuals covered by", 320, p);
g2D.setColor(Color.ORANGE);
g2D.fillOval(455, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
p = p + 20;
- g2D.drawString("(no problem)", 320, p);
+ g2D.drawString("(no problem)</html>", 320, p);
p = p + 20;
g2D.setColor(darkRed);
Ellipse2D circlePoint3 = new Ellipse2D.Double(315 - 1, p - 6, 4, 4);
g2D.fill(circlePoint3);
g2D.setColor(Color.BLACK);
- g2D.drawString("individuals covered by", 320, p);
+ g2D.drawString("<html>individuals covered by", 320, p);
g2D.setColor(Color.YELLOW);
g2D.fillOval(455, p - 9, 9, 9);
g2D.setColor(Color.BLACK);
p = p + 20;
- g2D.drawString("(potential problem)", 320, p);
+ g2D.drawString("(potential problem)</html>", 320, p);
}
g2D.setColor(Color.YELLOW);
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/ReadingOntologyThread.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ReadingOntologyThread.java 2009-11-25 10:57:13 UTC (rev 1919)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ReadingOntologyThread.java 2009-11-25 10:59:10 UTC (rev 1920)
@@ -30,16 +30,15 @@
import org.dllearner.reasoning.FastInstanceChecker;
import org.protege.editor.owl.OWLEditorKit;
import org.semanticweb.owl.model.OWLClass;
-import org.semanticweb.owl.model.OWLOntology;
/**
* This class reads the ontologie in a separate thread.
+ *
* @author Christian Koetteritzsch
- *
+ *
*/
public class ReadingOntologyThread extends Thread {
-
private boolean hasIndividuals;
private FastInstanceChecker reasoner;
private NamedClass currentConcept;
@@ -50,52 +49,64 @@
private boolean isInconsistent;
private OWLClass current;
private DLLearnerView view;
-
+
/**
* This is the constructor of the ReadingOntologyThread.
- * @param editorKit OWLEditorKit
- * @param v DL-Learner view
- * @param m DL-Learner model
+ *
+ * @param editorKit
+ * OWLEditorKit
+ * @param v
+ * DL-Learner view
+ * @param m
+ * DL-Learner model
*/
- public ReadingOntologyThread(OWLEditorKit editorKit, DLLearnerView v, DLLearnerModel m) {
+ public ReadingOntologyThread(OWLEditorKit editorKit, DLLearnerView v,
+ DLLearnerModel m) {
this.editor = editorKit;
this.view = v;
this.model = m;
}
-
+
/**
* This method sets the view of the DL-Learner plugin.
- * @param v DLLearnerView
+ *
+ * @param v
+ * DLLearnerView
*/
public void setDLLearnerView(DLLearnerView v) {
this.view = v;
}
-
+
/**
* This method sets the model of the DL-Learner plugin.
- * @param m DLLearnerModel
+ *
+ * @param m
+ * DLLearnerModel
*/
public void setDLLearnerModel(DLLearnerModel m) {
this.model = m;
}
+
/**
* This method sets the individuals that belong to the concept which is
* chosen in protege.
*/
private void setPositiveConcept() {
- current = editor.getOWLWorkspace().getOWLSelectionModel().getLastSelectedClass();
- if(current != null) {
+ current = editor.getOWLWorkspace().getOWLSelectionModel()
+ .getLastSelectedClass();
+ if (current != null) {
SortedSet<Individual> individuals = null;
hasIndividuals = false;
// checks if selected concept is thing when yes then it selects all
// individuals
if (!(current.toString().equals("Thing"))) {
List<NamedClass> classList = reasoner.getAtomicConceptsList();
- for(NamedClass concept : classList) {
+ for (NamedClass concept : classList) {
// if individuals is null
if (individuals == null) {
- // checks if the concept is the selected concept in protege
- for(String onto : ontologieURI) {
+ // checks if the concept is the selected concept in
+ // protege
+ for (String onto : ontologieURI) {
if (concept.toString().contains(onto)) {
if (concept.toString().equals(
onto + current.toString())) {
@@ -104,10 +115,12 @@
// the concept
currentConcept = concept;
if (reasoner.getIndividuals(concept) != null) {
- if (reasoner.getIndividuals(concept).size() > 0) {
+ if (reasoner.getIndividuals(concept)
+ .size() > 0) {
hasIndividuals = true;
}
- individual = reasoner.getIndividuals(concept);
+ individual = reasoner
+ .getIndividuals(concept);
model.setIndividuals(individual);
model.setHasIndividuals(hasIndividuals);
model.setCurrentConcept(currentConcept);
@@ -122,7 +135,7 @@
} else {
if (reasoner.getIndividuals().size() > 0) {
hasIndividuals = true;
-
+
}
individual = reasoner.getIndividuals();
model.setIndividuals(individual);
@@ -130,7 +143,7 @@
}
}
}
-
+
/**
* This Method checks if the selected class has any individuals.
*
@@ -139,66 +152,87 @@
public boolean hasIndividuals() {
return hasIndividuals;
}
-
+
/**
- * Checks the URI if a "#" is in it.
+ * Puts every base uri in a HashSet.
*/
private void checkURI() {
ontologieURI = new HashSet<String>();
- Set<OWLOntology> ont = editor.getModelManager().getActiveOntologies();
Set<Individual> indi = reasoner.getIndividuals();
- for(OWLOntology onto : ont) {
- String ontURI = onto.getURI().toString();
- for(Individual ind : indi) {
- if(ind.toString().contains(ontURI)) {
- if(ind.toString().contains("#")) {
- ontologieURI.add(onto.getURI().toString()+"#");
+ for (Individual ind : indi) {
+ int ontURI = ind.toString().lastIndexOf("/");
+ int ontURI2 = ind.toString().lastIndexOf("#");
+ String uriNeu = "";
+ String uriAlt = "";
+ if (ontURI2 != -1) {
+ uriNeu = ind.toString().substring(0, ontURI2 + 1);
+ if (uriNeu != uriAlt) {
+ ontologieURI.add(uriNeu);
+ uriAlt = uriNeu;
+ uriNeu = "";
+ String uriTest = indi.toString().replace(uriAlt, "");
+ if(!uriTest.contains("/") && !uriTest.contains("#")) {
break;
- } else {
- ontologieURI.add(onto.getURI().toString());
- break;
}
}
- }
+ } else {
+ uriNeu = ind.toString().substring(0, ontURI + 1);
+ if (uriNeu != uriAlt) {
+ ontologieURI.add(uriNeu);
+ uriAlt = uriNeu;
+ uriNeu = "";
+ String uriTest = indi.toString().replace(uriAlt, "");
+ if(!uriTest.contains("/") && !uriTest.contains("#")) {
+ break;
+ }
+
+ }
+ }
}
model.setOntologyURIString(ontologieURI);
}
-
+
@Override
public void run() {
- String loading ="<html><font size=\"3\">loading instances...</font></html>";
+ String loading = "<html><font size=\"3\">loading instances...</font></html>";
view.getHintPanel().setForeground(Color.RED);
view.setHintMessage(loading);
- if(!model.isReasonerSet() || model.getIsKnowledgeSourceIsUpdated() == true) {
+ if (!model.isReasonerSet()
+ || model.getIsKnowledgeSourceIsUpdated() == true) {
model.setKnowledgeSource();
model.setReasoner();
}
reasoner = model.getReasoner();
isInconsistent = view.getIsInconsistent();
- if(!isInconsistent) {
+ if (!isInconsistent) {
this.checkURI();
this.setPositiveConcept();
if (this.hasIndividuals()) {
view.getRunButton().setEnabled(true);
view.getHintPanel().setForeground(Color.BLACK);
- view.setHintMessage("<html><font size=\"3\">To get suggestions for class descriptions, please click the button above.</font></html>");
-
+ view
+ .setHintMessage("<html><font size=\"3\">To get suggestions for class descriptions, please click the button above.</font></html>");
+
} else {
view.getRunButton().setEnabled(false);
view.getHintPanel().setVisible(true);
- String message ="<html><font size=\"3\" color=\"red\">There are no Instances for " + current + " available. Please insert some Instances.</font></html>";
+ String message = "<html><font size=\"3\" color=\"red\">There are no Instances for "
+ + current
+ + " available. Please insert some Instances.</font></html>";
view.getHintPanel().setForeground(Color.RED);
view.setHintMessage(message);
}
} else {
view.getHintPanel().setForeground(Color.RED);
view.getRunButton().setEnabled(false);
- view.setHintMessage("The ontology is inconsistent and suggestions for class descriptions can only \nbe computed on consistent ontologies. Please repair the ontology first");
+ view
+ .setHintMessage("The ontology is inconsistent and suggestions for class descriptions can only \nbe computed on consistent ontologies. Please repair the ontology first");
}
}
-
+
/**
* This method returns the NamedClass for the currently selected class.
+ *
* @return NamedClass of the currently selected class
*/
public NamedClass getCurrentConcept() {
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
