[DL-Learner SVN] SF.net SVN: dl-learner:[1550] trunk/examples/carcinogenesis

[<jen...@us...>]

Revision: 1550
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1550&view=rev
Author:   jenslehmann
Date:     2008-12-12 13:09:10 +0000 (Fri, 12 Dec 2008)

Log Message:
-----------
divided examples for parameter estimation

Added Paths:
-----------
    trunk/examples/carcinogenesis/param.conf
    trunk/examples/carcinogenesis/validate.conf

Added: trunk/examples/carcinogenesis/param.conf
===================================================================
--- trunk/examples/carcinogenesis/param.conf	                        (rev 0)
+++ trunk/examples/carcinogenesis/param.conf	2008-12-12 13:09:10 UTC (rev 1550)
@@ -0,0 +1,123 @@
+// contains 30% of all examples (see validate.conf) for estimating the parameters of DL-Learner
+
+import("carcinogenesis.owl");
+
+// general setup
+reasoner = fastInstanceChecker;
+algorithm = refexamples;
+refexamples.noisePercentage = 30;
+refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
+
+// search tree
+refexamples.writeSearchTree = false;
+refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";
+
+// store some settings to make the experiment reproducable in the future
+refexamples.negativeWeight = 0.8;
+refexamples.startNodeBonus = 1.0;
+refexamples.forceRefinementLengthIncrease = false;
+refexamples.cardinalityLimit = 5;
+refexamples.usePropernessChecks = false; 
+
++"http://dl-learner.org/carcinogenesis#d1"
++"http://dl-learner.org/carcinogenesis#d10"
++"http://dl-learner.org/carcinogenesis#d101"
++"http://dl-learner.org/carcinogenesis#d102"
++"http://dl-learner.org/carcinogenesis#d103"
++"http://dl-learner.org/carcinogenesis#d106"
++"http://dl-learner.org/carcinogenesis#d107"
++"http://dl-learner.org/carcinogenesis#d108"
++"http://dl-learner.org/carcinogenesis#d11"
++"http://dl-learner.org/carcinogenesis#d12"
++"http://dl-learner.org/carcinogenesis#d13"
++"http://dl-learner.org/carcinogenesis#d134"
++"http://dl-learner.org/carcinogenesis#d135"
++"http://dl-learner.org/carcinogenesis#d136"
++"http://dl-learner.org/carcinogenesis#d138"
++"http://dl-learner.org/carcinogenesis#d140"
++"http://dl-learner.org/carcinogenesis#d141"
++"http://dl-learner.org/carcinogenesis#d144"
++"http://dl-learner.org/carcinogenesis#d145"
++"http://dl-learner.org/carcinogenesis#d146"
++"http://dl-learner.org/carcinogenesis#d147"
++"http://dl-learner.org/carcinogenesis#d15"
++"http://dl-learner.org/carcinogenesis#d17"
++"http://dl-learner.org/carcinogenesis#d19"
++"http://dl-learner.org/carcinogenesis#d192"
++"http://dl-learner.org/carcinogenesis#d193"
++"http://dl-learner.org/carcinogenesis#d195"
++"http://dl-learner.org/carcinogenesis#d196"
++"http://dl-learner.org/carcinogenesis#d197"
++"http://dl-learner.org/carcinogenesis#d198"
++"http://dl-learner.org/carcinogenesis#d199"
++"http://dl-learner.org/carcinogenesis#d2"
++"http://dl-learner.org/carcinogenesis#d20"
++"http://dl-learner.org/carcinogenesis#d200"
++"http://dl-learner.org/carcinogenesis#d201"
++"http://dl-learner.org/carcinogenesis#d202"
++"http://dl-learner.org/carcinogenesis#d203"
++"http://dl-learner.org/carcinogenesis#d204"
++"http://dl-learner.org/carcinogenesis#d205"
++"http://dl-learner.org/carcinogenesis#d21"
++"http://dl-learner.org/carcinogenesis#d22"
++"http://dl-learner.org/carcinogenesis#d226"
++"http://dl-learner.org/carcinogenesis#d227"
++"http://dl-learner.org/carcinogenesis#d228"
++"http://dl-learner.org/carcinogenesis#d229"
++"http://dl-learner.org/carcinogenesis#d231"
++"http://dl-learner.org/carcinogenesis#d232"
++"http://dl-learner.org/carcinogenesis#d234"
++"http://dl-learner.org/carcinogenesis#d236"
++"http://dl-learner.org/carcinogenesis#d239"
++"http://dl-learner.org/carcinogenesis#d23_2"
++"http://dl-learner.org/carcinogenesis#d242"
++"http://dl-learner.org/carcinogenesis#d245"
++"http://dl-learner.org/carcinogenesis#d247"
++"http://dl-learner.org/carcinogenesis#d249"
+
+-"http://dl-learner.org/carcinogenesis#d110"
+-"http://dl-learner.org/carcinogenesis#d111"
+-"http://dl-learner.org/carcinogenesis#d114"
+-"http://dl-learner.org/carcinogenesis#d116"
+-"http://dl-learner.org/carcinogenesis#d117"
+-"http://dl-learner.org/carcinogenesis#d119"
+-"http://dl-learner.org/carcinogenesis#d121"
+-"http://dl-learner.org/carcinogenesis#d123"
+-"http://dl-learner.org/carcinogenesis#d124"
+-"http://dl-learner.org/carcinogenesis#d125"
+-"http://dl-learner.org/carcinogenesis#d127"
+-"http://dl-learner.org/carcinogenesis#d128"
+-"http://dl-learner.org/carcinogenesis#d130"
+-"http://dl-learner.org/carcinogenesis#d133"
+-"http://dl-learner.org/carcinogenesis#d150"
+-"http://dl-learner.org/carcinogenesis#d151"
+-"http://dl-learner.org/carcinogenesis#d154"
+-"http://dl-learner.org/carcinogenesis#d155"
+-"http://dl-learner.org/carcinogenesis#d156"
+-"http://dl-learner.org/carcinogenesis#d159"
+-"http://dl-learner.org/carcinogenesis#d160"
+-"http://dl-learner.org/carcinogenesis#d161"
+-"http://dl-learner.org/carcinogenesis#d162"
+-"http://dl-learner.org/carcinogenesis#d163"
+-"http://dl-learner.org/carcinogenesis#d164"
+-"http://dl-learner.org/carcinogenesis#d165"
+-"http://dl-learner.org/carcinogenesis#d166"
+-"http://dl-learner.org/carcinogenesis#d169"
+-"http://dl-learner.org/carcinogenesis#d170"
+-"http://dl-learner.org/carcinogenesis#d171"
+-"http://dl-learner.org/carcinogenesis#d172"
+-"http://dl-learner.org/carcinogenesis#d173"
+-"http://dl-learner.org/carcinogenesis#d174"
+-"http://dl-learner.org/carcinogenesis#d178"
+-"http://dl-learner.org/carcinogenesis#d179"
+-"http://dl-learner.org/carcinogenesis#d180"
+-"http://dl-learner.org/carcinogenesis#d181"
+-"http://dl-learner.org/carcinogenesis#d183"
+-"http://dl-learner.org/carcinogenesis#d184"
+-"http://dl-learner.org/carcinogenesis#d185"
+-"http://dl-learner.org/carcinogenesis#d186"
+-"http://dl-learner.org/carcinogenesis#d188"
+-"http://dl-learner.org/carcinogenesis#d190"
+-"http://dl-learner.org/carcinogenesis#d194"
+-"http://dl-learner.org/carcinogenesis#d207"
+-"http://dl-learner.org/carcinogenesis#d208_1"

Added: trunk/examples/carcinogenesis/validate.conf
===================================================================
--- trunk/examples/carcinogenesis/validate.conf	                        (rev 0)
+++ trunk/examples/carcinogenesis/validate.conf	2008-12-12 13:09:10 UTC (rev 1550)
@@ -0,0 +1,258 @@
+// contains 70% of all examples (see param.conf) for estimating the accuracy of DL-Learner
+
+import("carcinogenesis.owl");
+
+// general setup
+reasoner = fastInstanceChecker;
+algorithm = refexamples;
+refexamples.noisePercentage = 30;
+refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
+
+// search tree
+refexamples.writeSearchTree = false;
+refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";
+
+// store some settings to make the experiment reproducable in the future
+refexamples.negativeWeight = 0.8;
+refexamples.startNodeBonus = 1.0;
+refexamples.forceRefinementLengthIncrease = false;
+refexamples.cardinalityLimit = 5;
+refexamples.usePropernessChecks = false;
+
++"http://dl-learner.org/carcinogenesis#d25"
++"http://dl-learner.org/carcinogenesis#d252"
++"http://dl-learner.org/carcinogenesis#d253"
++"http://dl-learner.org/carcinogenesis#d254"
++"http://dl-learner.org/carcinogenesis#d255"
++"http://dl-learner.org/carcinogenesis#d26"
++"http://dl-learner.org/carcinogenesis#d272"
++"http://dl-learner.org/carcinogenesis#d275"
++"http://dl-learner.org/carcinogenesis#d277"
++"http://dl-learner.org/carcinogenesis#d279"
++"http://dl-learner.org/carcinogenesis#d28"
++"http://dl-learner.org/carcinogenesis#d281"
++"http://dl-learner.org/carcinogenesis#d283"
++"http://dl-learner.org/carcinogenesis#d284"
++"http://dl-learner.org/carcinogenesis#d288"
++"http://dl-learner.org/carcinogenesis#d29"
++"http://dl-learner.org/carcinogenesis#d290"
++"http://dl-learner.org/carcinogenesis#d291"
++"http://dl-learner.org/carcinogenesis#d292"
++"http://dl-learner.org/carcinogenesis#d30"
++"http://dl-learner.org/carcinogenesis#d31"
++"http://dl-learner.org/carcinogenesis#d32"
++"http://dl-learner.org/carcinogenesis#d33"
++"http://dl-learner.org/carcinogenesis#d34"
++"http://dl-learner.org/carcinogenesis#d35"
++"http://dl-learner.org/carcinogenesis#d36"
++"http://dl-learner.org/carcinogenesis#d37"
++"http://dl-learner.org/carcinogenesis#d38"
++"http://dl-learner.org/carcinogenesis#d42"
++"http://dl-learner.org/carcinogenesis#d43"
++"http://dl-learner.org/carcinogenesis#d44"
++"http://dl-learner.org/carcinogenesis#d45"
++"http://dl-learner.org/carcinogenesis#d46"
++"http://dl-learner.org/carcinogenesis#d47"
++"http://dl-learner.org/carcinogenesis#d48"
++"http://dl-learner.org/carcinogenesis#d49"
++"http://dl-learner.org/carcinogenesis#d5"
++"http://dl-learner.org/carcinogenesis#d51"
++"http://dl-learner.org/carcinogenesis#d52"
++"http://dl-learner.org/carcinogenesis#d53"
++"http://dl-learner.org/carcinogenesis#d55"
++"http://dl-learner.org/carcinogenesis#d58"
++"http://dl-learner.org/carcinogenesis#d6"
++"http://dl-learner.org/carcinogenesis#d7"
++"http://dl-learner.org/carcinogenesis#d84"
++"http://dl-learner.org/carcinogenesis#d85_2"
++"http://dl-learner.org/carcinogenesis#d86"
++"http://dl-learner.org/carcinogenesis#d87"
++"http://dl-learner.org/carcinogenesis#d88"
++"http://dl-learner.org/carcinogenesis#d89"
++"http://dl-learner.org/carcinogenesis#d9"
++"http://dl-learner.org/carcinogenesis#d91"
++"http://dl-learner.org/carcinogenesis#d92"
++"http://dl-learner.org/carcinogenesis#d93"
++"http://dl-learner.org/carcinogenesis#d95"
++"http://dl-learner.org/carcinogenesis#d96"
++"http://dl-learner.org/carcinogenesis#d98"
++"http://dl-learner.org/carcinogenesis#d99"
++"http://dl-learner.org/carcinogenesis#d100"
++"http://dl-learner.org/carcinogenesis#d104"
++"http://dl-learner.org/carcinogenesis#d105"
++"http://dl-learner.org/carcinogenesis#d109"
++"http://dl-learner.org/carcinogenesis#d137"
++"http://dl-learner.org/carcinogenesis#d139"
++"http://dl-learner.org/carcinogenesis#d14"
++"http://dl-learner.org/carcinogenesis#d142"
++"http://dl-learner.org/carcinogenesis#d143"
++"http://dl-learner.org/carcinogenesis#d148"
++"http://dl-learner.org/carcinogenesis#d16"
++"http://dl-learner.org/carcinogenesis#d18"
++"http://dl-learner.org/carcinogenesis#d191"
++"http://dl-learner.org/carcinogenesis#d206"
++"http://dl-learner.org/carcinogenesis#d230"
++"http://dl-learner.org/carcinogenesis#d233"
++"http://dl-learner.org/carcinogenesis#d235"
++"http://dl-learner.org/carcinogenesis#d237"
++"http://dl-learner.org/carcinogenesis#d238"
++"http://dl-learner.org/carcinogenesis#d23_1"
++"http://dl-learner.org/carcinogenesis#d24"
++"http://dl-learner.org/carcinogenesis#d240"
++"http://dl-learner.org/carcinogenesis#d241"
++"http://dl-learner.org/carcinogenesis#d243"
++"http://dl-learner.org/carcinogenesis#d244"
++"http://dl-learner.org/carcinogenesis#d246"
++"http://dl-learner.org/carcinogenesis#d248"
++"http://dl-learner.org/carcinogenesis#d250"
++"http://dl-learner.org/carcinogenesis#d251"
++"http://dl-learner.org/carcinogenesis#d27"
++"http://dl-learner.org/carcinogenesis#d273"
++"http://dl-learner.org/carcinogenesis#d274"
++"http://dl-learner.org/carcinogenesis#d278"
++"http://dl-learner.org/carcinogenesis#d286"
++"http://dl-learner.org/carcinogenesis#d289"
++"http://dl-learner.org/carcinogenesis#d3"
++"http://dl-learner.org/carcinogenesis#d39"
++"http://dl-learner.org/carcinogenesis#d4"
++"http://dl-learner.org/carcinogenesis#d40"
++"http://dl-learner.org/carcinogenesis#d41"
++"http://dl-learner.org/carcinogenesis#d50"
++"http://dl-learner.org/carcinogenesis#d54"
++"http://dl-learner.org/carcinogenesis#d56"
++"http://dl-learner.org/carcinogenesis#d57"
++"http://dl-learner.org/carcinogenesis#d8"
++"http://dl-learner.org/carcinogenesis#d85_1"
++"http://dl-learner.org/carcinogenesis#d90"
++"http://dl-learner.org/carcinogenesis#d94"
++"http://dl-learner.org/carcinogenesis#d97"
+
+-"http://dl-learner.org/carcinogenesis#d209"
+-"http://dl-learner.org/carcinogenesis#d210"
+-"http://dl-learner.org/carcinogenesis#d211"
+-"http://dl-learner.org/carcinogenesis#d212"
+-"http://dl-learner.org/carcinogenesis#d213"
+-"http://dl-learner.org/carcinogenesis#d214"
+-"http://dl-learner.org/carcinogenesis#d215"
+-"http://dl-learner.org/carcinogenesis#d217"
+-"http://dl-learner.org/carcinogenesis#d218"
+-"http://dl-learner.org/carcinogenesis#d219"
+-"http://dl-learner.org/carcinogenesis#d220"
+-"http://dl-learner.org/carcinogenesis#d224"
+-"http://dl-learner.org/carcinogenesis#d256"
+-"http://dl-learner.org/carcinogenesis#d257"
+-"http://dl-learner.org/carcinogenesis#d258"
+-"http://dl-learner.org/carcinogenesis#d261"
+-"http://dl-learner.org/carcinogenesis#d262"
+-"http://dl-learner.org/carcinogenesis#d263"
+-"http://dl-learner.org/carcinogenesis#d264"
+-"http://dl-learner.org/carcinogenesis#d265"
+-"http://dl-learner.org/carcinogenesis#d266"
+-"http://dl-learner.org/carcinogenesis#d267"
+-"http://dl-learner.org/carcinogenesis#d269"
+-"http://dl-learner.org/carcinogenesis#d271"
+-"http://dl-learner.org/carcinogenesis#d276"
+-"http://dl-learner.org/carcinogenesis#d280"
+-"http://dl-learner.org/carcinogenesis#d285"
+-"http://dl-learner.org/carcinogenesis#d287"
+-"http://dl-learner.org/carcinogenesis#d293"
+-"http://dl-learner.org/carcinogenesis#d294"
+-"http://dl-learner.org/carcinogenesis#d59"
+-"http://dl-learner.org/carcinogenesis#d60"
+-"http://dl-learner.org/carcinogenesis#d61"
+-"http://dl-learner.org/carcinogenesis#d63"
+-"http://dl-learner.org/carcinogenesis#d64"
+-"http://dl-learner.org/carcinogenesis#d65"
+-"http://dl-learner.org/carcinogenesis#d69"
+-"http://dl-learner.org/carcinogenesis#d70"
+-"http://dl-learner.org/carcinogenesis#d71"
+-"http://dl-learner.org/carcinogenesis#d72"
+-"http://dl-learner.org/carcinogenesis#d73"
+-"http://dl-learner.org/carcinogenesis#d74"
+-"http://dl-learner.org/carcinogenesis#d75"
+-"http://dl-learner.org/carcinogenesis#d76"
+-"http://dl-learner.org/carcinogenesis#d77"
+-"http://dl-learner.org/carcinogenesis#d78"
+-"http://dl-learner.org/carcinogenesis#d79"
+-"http://dl-learner.org/carcinogenesis#d80"
+-"http://dl-learner.org/carcinogenesis#d81"
+-"http://dl-learner.org/carcinogenesis#d82"
+-"http://dl-learner.org/carcinogenesis#d112"
+-"http://dl-learner.org/carcinogenesis#d113"
+-"http://dl-learner.org/carcinogenesis#d115"
+-"http://dl-learner.org/carcinogenesis#d118"
+-"http://dl-learner.org/carcinogenesis#d120"
+-"http://dl-learner.org/carcinogenesis#d122"
+-"http://dl-learner.org/carcinogenesis#d126"
+-"http://dl-learner.org/carcinogenesis#d129"
+-"http://dl-learner.org/carcinogenesis#d131"
+-"http://dl-learner.org/carcinogenesis#d132"
+-"http://dl-learner.org/carcinogenesis#d149"
+-"http://dl-learner.org/carcinogenesis#d152"
+-"http://dl-learner.org/carcinogenesis#d153"
+-"http://dl-learner.org/carcinogenesis#d157"
+-"http://dl-learner.org/carcinogenesis#d158"
+-"http://dl-learner.org/carcinogenesis#d167"
+-"http://dl-learner.org/carcinogenesis#d168"
+-"http://dl-learner.org/carcinogenesis#d175"
+-"http://dl-learner.org/carcinogenesis#d176"
+-"http://dl-learner.org/carcinogenesis#d177"
+-"http://dl-learner.org/carcinogenesis#d182"
+-"http://dl-learner.org/carcinogenesis#d187"
+-"http://dl-learner.org/carcinogenesis#d189"
+-"http://dl-learner.org/carcinogenesis#d208_2"
+-"http://dl-learner.org/carcinogenesis#d216"
+-"http://dl-learner.org/carcinogenesis#d221"
+-"http://dl-learner.org/carcinogenesis#d222"
+-"http://dl-learner.org/carcinogenesis#d223"
+-"http://dl-learner.org/carcinogenesis#d225"
+-"http://dl-learner.org/carcinogenesis#d259"
+-"http://dl-learner.org/carcinogenesis#d260"
+-"http://dl-learner.org/carcinogenesis#d268"
+-"http://dl-learner.org/carcinogenesis#d270"
+-"http://dl-learner.org/carcinogenesis#d282"
+-"http://dl-learner.org/carcinogenesis#d295"
+-"http://dl-learner.org/carcinogenesis#d62"
+-"http://dl-learner.org/carcinogenesis#d66"
+-"http://dl-learner.org/carcinogenesis#d67"
+-"http://dl-learner.org/carcinogenesis#d68"
+-"http://dl-learner.org/carcinogenesis#d83"
++"http://dl-learner.org/carcinogenesis#d296"
++"http://dl-learner.org/carcinogenesis#d305"
++"http://dl-learner.org/carcinogenesis#d306"
++"http://dl-learner.org/carcinogenesis#d307"
++"http://dl-learner.org/carcinogenesis#d308"
++"http://dl-learner.org/carcinogenesis#d311"
++"http://dl-learner.org/carcinogenesis#d314"
++"http://dl-learner.org/carcinogenesis#d315"
++"http://dl-learner.org/carcinogenesis#d316"
++"http://dl-learner.org/carcinogenesis#d320"
++"http://dl-learner.org/carcinogenesis#d322"
++"http://dl-learner.org/carcinogenesis#d323"
++"http://dl-learner.org/carcinogenesis#d325"
++"http://dl-learner.org/carcinogenesis#d329"
++"http://dl-learner.org/carcinogenesis#d330"
++"http://dl-learner.org/carcinogenesis#d331"
++"http://dl-learner.org/carcinogenesis#d332"
++"http://dl-learner.org/carcinogenesis#d333"
++"http://dl-learner.org/carcinogenesis#d336"
++"http://dl-learner.org/carcinogenesis#d337"
+-"http://dl-learner.org/carcinogenesis#d297"
+-"http://dl-learner.org/carcinogenesis#d298"
+-"http://dl-learner.org/carcinogenesis#d299"
+-"http://dl-learner.org/carcinogenesis#d300"
+-"http://dl-learner.org/carcinogenesis#d302"
+-"http://dl-learner.org/carcinogenesis#d303"
+-"http://dl-learner.org/carcinogenesis#d304"
+-"http://dl-learner.org/carcinogenesis#d309"
+-"http://dl-learner.org/carcinogenesis#d312"
+-"http://dl-learner.org/carcinogenesis#d313"
+-"http://dl-learner.org/carcinogenesis#d317"
+-"http://dl-learner.org/carcinogenesis#d318"
+-"http://dl-learner.org/carcinogenesis#d319"
+-"http://dl-learner.org/carcinogenesis#d324"
+-"http://dl-learner.org/carcinogenesis#d326"
+-"http://dl-learner.org/carcinogenesis#d327"
+-"http://dl-learner.org/carcinogenesis#d328"
+-"http://dl-learner.org/carcinogenesis#d334"
+-"http://dl-learner.org/carcinogenesis#d335"


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