[DL-Learner SVN] SF.net SVN: dl-learner:[1370] trunk

[<ku...@us...>]

Revision: 1370
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1370&view=rev
Author:   kurzum
Date:     2008-10-13 11:05:08 +0000 (Mon, 13 Oct 2008)

Log Message:
-----------
small changes fixed lymphography

Modified Paths:
--------------
    trunk/examples/lymphography/lymphography_Class1.conf
    trunk/examples/lymphography/lymphography_Class2.conf
    trunk/examples/lymphography/lymphography_Class3.conf
    trunk/examples/lymphography/lymphography_Class4.conf
    trunk/examples/sparql/README.txt
    trunk/examples/sparql/SKOSTEST_local.conf
    trunk/examples/sparql/scrobble.conf
    trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java

Property Changed:
----------------
    trunk/examples/sparql/

Modified: trunk/examples/lymphography/lymphography_Class1.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class1.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class1.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -17,16 +17,17 @@
 
 */
 
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
 "http://www.example.org/lymphography#Target1_NormalFind",
 "http://www.example.org/lymphography#Target2_Metastases",
 "http://www.example.org/lymphography#Target3_MalignLymph",
 "http://www.example.org/lymphography#Target4_Fibrosis"
 };
 
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
 import("lymphography.owl");
 
 /*Class1*/

Modified: trunk/examples/lymphography/lymphography_Class2.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class2.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class2.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -15,16 +15,18 @@
 a new experimental version of the refinement algorithm)
 */
 
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
 "http://www.example.org/lymphography#Target1_NormalFind",
 "http://www.example.org/lymphography#Target2_Metastases",
 "http://www.example.org/lymphography#Target3_MalignLymph",
 "http://www.example.org/lymphography#Target4_Fibrosis"
 };
 
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
+refexamples.noisePercentage = 13.0;
 
 import("lymphography.owl");
 

Modified: trunk/examples/lymphography/lymphography_Class3.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class3.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class3.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -17,16 +17,18 @@
 
 */
 
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
 "http://www.example.org/lymphography#Target1_NormalFind",
 "http://www.example.org/lymphography#Target2_Metastases",
 "http://www.example.org/lymphography#Target3_MalignLymph",
 "http://www.example.org/lymphography#Target4_Fibrosis"
 };
 
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
+refexamples.noisePercentage = 19.0;
 import("lymphography.owl");
 
 /*Class3*/

Modified: trunk/examples/lymphography/lymphography_Class4.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class4.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class4.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -15,6 +15,8 @@
 a new experimental version of the refinement algorithm)
 */
 
+algorithm = refexamples;
+
 refexamples.ignoredConcepts = {
 "http://www.example.org/lymphography#Target1_NormalFind",
 "http://www.example.org/lymphography#Target2_Metastases",
@@ -23,8 +25,8 @@
 };
 
 refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = false;
-refexamples.useNegation = true;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
 
 import("lymphography.owl");
 


Property changes on: trunk/examples/sparql
___________________________________________________________________
Added: svn:ignore
   + musicbrainz.conf


Modified: trunk/examples/sparql/README.txt
===================================================================
--- trunk/examples/sparql/README.txt	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/README.txt	2008-10-13 11:05:08 UTC (rev 1370)
@@ -3,3 +3,29 @@
 
 When using the SPARQL component, files are written into the directory /cache to
 avoid performing the same queries more than once.
+
+
+***predefined Filters
+all predefined filters remove references to hompage, etc during the extraction
+YAGO allows yago, 
+SKOS allows skos, 
+YAGOSKOS, allows yago and skos, 
+YAGOONLY allows yago classes only, no skos , no umbel
+
+***predefined Endpoints
+List of values available for 
+sparql.predefinedEndpoint("DBPEDIA"); (replace DBPEDIA)
+Most of them are not used in any examples, but are available.
+DBPEDIA the global DBpedia endpoint http://dbpedia.openlinksw.com:8890/sparql
+LOCALDBPEDIA a local mirror of DBpedia running at aksw.org http://139.18.2.37:8890/sparql
+LOCALJOSECKI a local joseki store, url pointing at "http://localhost:2020/books"
+LOCALJOSEKIBIBLE a local joseki store, url pointing at "http://localhost:2020/bible"
+GOVTRACK www.govtrack.us | sparql: http://www.rdfabout.com/sparql
+MUSICBRAINZ  http://dbtune.org/musicbrainz/sparql
+SPARQLETTE
+SWCONFERENCE
+REVYU
+MYOPENLINK
+FACTBOOK
+DBLP
+

Modified: trunk/examples/sparql/SKOSTEST_local.conf
===================================================================
--- trunk/examples/sparql/SKOSTEST_local.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/SKOSTEST_local.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -1,16 +1,20 @@
 /**
- * Some people from Greece.
+ * Some people which are/were Prime Ministers of the UK and some random negative Examples.
  * Note: DBpedia is always subject to change, solutions will change over time
 
- * Possible Solution:
- *    Theorist OR (Mathematician AND Physicist)
+ * Possible Solutions:
+
+1: (http://dbpedia.org/class/yago/PrimeMinistersOfTheUnitedKingdom OR EXISTS http://dbpedia.org/property/termStart.TOP) (length 5, depth 3)
+2: (http://dbpedia.org/class/yago/LeadersOfTheBritishConservativeParty OR EXISTS http://dbpedia.org/property/termStart.TOP) (length 5, depth 3)
+
  *
  */
 
 // SPARQL options
 sparql.recursionDepth = 1;
 
-//predefined filter (1 = YAGO based learning)
+
+//for a list of predefined Filters and Endpoints see examples/sparql/README.txt
 sparql.predefinedFilter = "YAGO";
 sparql.predefinedEndpoint = "LOCALDBPEDIA";
 
@@ -65,4 +69,4 @@
 +"http://dbpedia.org/resource/Anthony_Eden"
 +"http://dbpedia.org/resource/Anthony_Eden_hat"
 +"http://dbpedia.org/resource/Archibald_Primrose%2C_5th_Earl_of_Rosebery"
-+"http://dbpedia.org/resource/Arthur_Balfour"
\ No newline at end of file
++"http://dbpedia.org/resource/Arthur_Balfour"

Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/scrobble.conf	2008-10-13 11:05:08 UTC (rev 1370)
@@ -18,6 +18,7 @@
 
 sparql.recursionDepth = 3;
 sparql.predefinedEndpoint = "MUSICBRAINZ";
+sparql.saveExtractedFragment = true;
 
 algorithm = refexamples;
 refexamples.useNegation = false;

Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java	2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java	2008-10-13 11:05:08 UTC (rev 1370)
@@ -90,7 +90,13 @@
 			}else if(tuple.b.isAnon()){
 				@SuppressWarnings("unused")
 				RDFBlankNode n = (RDFBlankNode) tuple.b;
-				logger.warn("encountered Bnode in InstanceNode"+ this +"in tuple" + tuple);
+				if(tuple.a.toString().equals(OWLVocabulary.RDF_TYPE)){
+					logger.warn("blanknodes for instances not implemented yet (rare frequency). e.g. (instance rdf:type (A and B)"+" " + this+ " in tuple "+tuple);
+				}
+				else{
+					logger.warn("encountered Bnode in InstanceNode "+ this +" in tuple " + tuple);
+					logger.warn("In OWL-DL the subject of an object property assertion must be an instance (not a class). Triple will be ignored.");
+				}
 				return null;
 			
 			// basically : if p is rdf:type then o is a class


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