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[DL-Learner SVN] SF.net SVN: dl-learner:[1359] trunk/src/dl-learner/org/dllearner
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From: <ku...@us...> - 2008-10-10 07:52:16
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Revision: 1359
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1359&view=rev
Author: kurzum
Date: 2008-10-10 07:52:08 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/cli/QuickStart.java
trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
Modified: trunk/src/dl-learner/org/dllearner/cli/QuickStart.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/cli/QuickStart.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/cli/QuickStart.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -29,6 +29,7 @@
import java.util.Arrays;
import java.util.HashMap;
import java.util.Iterator;
+import java.util.List;
/**
* A tool to quickly start a learning example. It detects all conf files in the
@@ -38,14 +39,15 @@
* @author Jens Lehmann
*/
public class QuickStart {
-
+
// static HashMap<String, ArrayList<String>> hm = null;
static String pm = ".";// pathmodifier
+ static List<String> conffiles = new ArrayList<String>();
public static void main(String[] args) {
-
+
String lastused = readit();
String tab = " ";
int the_Number = 0;
@@ -119,7 +121,27 @@
number = true;
break;
} catch (Exception e) {
+
+ for(String one:conffiles){
+
+ if(one.contains(cmd)){
+ System.out.println("Did you mean "+one+" ? (Press enter to confirm,\n" +
+ "any key+enter for another try)");
+ cmd = br.readLine();
+ if(cmd.length()==0){
+ writeit(one);
+ if(!query) {
+ Start.main(new String[] { one });
+ }else {
+ Start.main(new String[] {"-q",one});
+ }
+ return;
+ }else {break;}
+ }
+ }
+
System.out.println("Not a number");
+ continue;
}
}// end while
@@ -166,6 +188,7 @@
confs.put(path, new ArrayList<String>());
}
confs.get(path).add(act[i].substring(0, act[i].length() - 5));
+ conffiles.add(path+act[i]);
// System.out.println(act[i].substring(0,act[i].length()-5));
// System.out.println(hm.get(path).size());
// hm.put(new
Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -195,7 +195,7 @@
//OWLCommentAnnotation comment = factory.getOWL(one.b.toString());
//owlAPIOntologyCollector.addAxiom(factory.getOWLEntityAnnotationAxiom(me, label));
}else if(one.getURIString().equals(OWLVocabulary.RDFS_LABEL)){
- OWLLabelAnnotation label = factory.getOWLLabelAnnotation(one.b.toString());
+ OWLLabelAnnotation label = factory.getOWLLabelAnnotation(ln.getString());
owlAPIOntologyCollector.addAxiom(factory.getOWLEntityAnnotationAxiom(me, label));
}else{
Modified: trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -45,8 +45,9 @@
public SortedSet<RDFNodeTuple> applyRule(Node subject, SortedSet<RDFNodeTuple> tuples){
SortedSet<RDFNodeTuple> keep = new TreeSet<RDFNodeTuple>();
for (RDFNodeTuple tuple : tuples) {
- if(tuple.aPartContains(oldObject)){
- tuple.a = new ResourceImpl(newObject);
+ if(tuple.bPartContains(oldObject)){
+ String tmp = tuple.b.toString().replace(oldObject, newObject);
+ tuple.b = new ResourceImpl(tmp);
JamonMonitorLogger.increaseCount(ObjectReplacementRule.class, "replacedObjects");
}
keep.add(tuple);
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -440,7 +440,7 @@
rsw.reset();
} catch (Exception e) {
- logger.warn("Exception caught in SPARQLTasks, passing emtpy result: "+e.getMessage());
+ logger.info("ignoring (see log for details): Exception caught in SPARQLTasks, passing emtpy result: "+e.getMessage());
}
return returnSet;
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -59,6 +59,7 @@
import org.dllearner.utilities.JamonMonitorLogger;
import org.dllearner.utilities.datastructures.StringTuple;
import org.dllearner.utilities.statistics.SimpleClock;
+import org.semanticweb.owl.model.OWLAxiom;
import org.semanticweb.owl.model.OWLOntology;
import com.jamonapi.Monitor;
@@ -291,7 +292,9 @@
fragment = m.getOWLAPIOntologyForNodes(seedNodes, configurator.getSaveExtractedFragment());
-
+ for (OWLAxiom a : fragment.getClassAxioms()){
+ System.out.println(a);
+ }
logger.info("Finished collecting fragment. needed "+extractionTime.getLastValue()+" ms");
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -127,16 +127,16 @@
//writeToSparqlLog("JSON: " + json);
//}catch (ResultSetException e) {
} catch (HTTPException e) {
- logger.warn("HTTPException in SparqlQuery\n"+ e.toString());
- logger.warn("query was "+ sparqlQueryString);
+ logger.debug("HTTPException in SparqlQuery\n"+ e.toString());
+ logger.debug("query was "+ sparqlQueryString);
writeToSparqlLog("ERROR: HTTPException occured"+ e.toString());
isRunning = false;
throw e;
}catch (RuntimeException e) {
- logger.warn("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
- logger.warn("query was (first 300 chars) "+ sparqlQueryString.substring(0,300).replaceAll("\n", " "));
+ logger.debug("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
+ logger.debug("query was (first 300 chars) "+ sparqlQueryString.substring(0,300).replaceAll("\n", " "));
writeToSparqlLog("ERROR: HTTPException occured: "+ e.toString());
isRunning = false;
throw e;
Modified: trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -91,14 +91,14 @@
// in the conf file about "optimal" parameters)
ignore.add("./examples/sparql/govtrack.conf"); // HTTP 500 Server error
ignore.add("./examples/sparql/musicbrainz.conf"); // HTTP 502 error - NullPointer in extraction
- ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
+ //working fine here ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
ignore.add("./examples/sparql/scrobble.conf"); // HTTP 502 Proxy Error
// ignore.add("./examples/family-benchmark/Cousin.conf"); // Out of Memory Error => disallowing ALL helps (TODO find out details)
- ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
+ //also working fine ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
ignore.add("./examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf"); // Pellet: literal cannot be cast to individual
// ignore.add("./examples/family-benchmark/Aunt.conf"); // did not terminate so far (waited 45 minutes) => disallowing ALL helps (TODO find out details)
ignore.add("./examples/krk/KRK_ZERO_against_1to5_fastInstance.conf"); // Out of Memory Error
- ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
+ //removed ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
int failedCounter = 0;
for (String path : confFiles.keySet()) {
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