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[DL-Learner SVN] SF.net SVN: dl-learner:[1170] trunk/src/dl-learner/org/dllearner
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From: <ku...@us...> - 2008-09-05 12:24:08
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Revision: 1170
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1170&view=rev
Author: kurzum
Date: 2008-09-05 12:24:05 +0000 (Fri, 05 Sep 2008)
Log Message:
-----------
java interface
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/core/configuration/Configurator.java
trunk/src/dl-learner/org/dllearner/core/configuration/OWLFileConfigurator.java
trunk/src/dl-learner/org/dllearner/core/configuration/SparqlKnowledgeSourceConfigurator.java
trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
trunk/src/dl-learner/org/dllearner/scripts/ConfigJavaGenerator.java
trunk/src/dl-learner/org/dllearner/scripts/Sample.java
trunk/src/dl-learner/org/dllearner/utilities/Files.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/core/configuration/FastInstanceCheckerConfigurator.java
trunk/src/dl-learner/org/dllearner/scripts/NewSample.java
Modified: trunk/src/dl-learner/org/dllearner/core/configuration/Configurator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/configuration/Configurator.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/core/configuration/Configurator.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -18,31 +18,44 @@
**/
package org.dllearner.core.configuration;
-
import java.util.Set;
import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.configuration.FastInstanceCheckerConfigurator;
import org.dllearner.core.configuration.OWLFileConfigurator;
import org.dllearner.core.configuration.SparqlKnowledgeSourceConfigurator;
import org.dllearner.kb.OWLFile;
import org.dllearner.kb.sparql.SparqlKnowledgeSource;
+import org.dllearner.reasoning.FastInstanceChecker;
/**
* automatically generated, do not edit manually
**/
-public class Configurator {
+public class Configurator {
/**
-URL pointing to the OWL file
+* url: URL pointing to the OWL file
**/
public static OWLFile getOWLFile (ComponentManager cm, String url ) {
-return OWLFileConfigurator.getOWLFile(cm, url);
+return OWLFileConfigurator.getOWLFile(cm, url);
}
/**
-relevant instances e.g. positive and negative examples in a learning problem
+* instances: relevant instances e.g. positive and negative examples in a learning problem
**/
public static SparqlKnowledgeSource getSparqlKnowledgeSource (ComponentManager cm, Set<String> instances ) {
-return SparqlKnowledgeSourceConfigurator.getSparqlKnowledgeSource(cm, instances);
+return SparqlKnowledgeSourceConfigurator.getSparqlKnowledgeSource(cm, instances);
}
+/**
+**/
+public static FastInstanceChecker getFastInstanceChecker (ComponentManager cm, KnowledgeSource knowledgeSource ) {
+return FastInstanceCheckerConfigurator.getFastInstanceChecker(cm, knowledgeSource);
}
+
+
+}
Added: trunk/src/dl-learner/org/dllearner/core/configuration/FastInstanceCheckerConfigurator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/configuration/FastInstanceCheckerConfigurator.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/core/configuration/FastInstanceCheckerConfigurator.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -0,0 +1,68 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ **/
+
+package org.dllearner.core.configuration;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.config.ConfigEntry;
+import org.dllearner.core.configuration.Configurator;
+import org.dllearner.reasoning.FastInstanceChecker;
+
+/**
+* automatically generated, do not edit manually
+**/
+public class FastInstanceCheckerConfigurator extends Configurator {
+
+FastInstanceChecker FastInstanceChecker;
+private String reasonerType = "pellet";
+
+public FastInstanceCheckerConfigurator (FastInstanceChecker FastInstanceChecker){
+this.FastInstanceChecker = FastInstanceChecker;
+}
+
+/**
+**/
+public static FastInstanceChecker getFastInstanceChecker (ComponentManager cm, KnowledgeSource knowledgeSource ) {
+FastInstanceChecker component = cm.reasoner(FastInstanceChecker.class, knowledgeSource );
+return component;
+}
+
+@SuppressWarnings({ "unchecked" })
+public <T> void applyConfigEntry(ConfigEntry<T> entry){
+String optionName = entry.getOptionName();
+if(false){//empty block
+}else if (optionName.equals("reasonerType")){
+reasonerType = (String) entry.getValue();
+}
+}
+
+/**
+reasonerType : FaCT++ or Pellet to dematerialize**/
+public String getReasonerType ( ) {
+return this.reasonerType;
+}
+
+/**
+reasonerType : FaCT++ or Pellet to dematerialize**/
+public void setReasonerType ( ComponentManager cm, String reasonerType) {
+cm.applyConfigEntry(FastInstanceChecker, "reasonerType", reasonerType);
+}
+
+
+}
Modified: trunk/src/dl-learner/org/dllearner/core/configuration/OWLFileConfigurator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/configuration/OWLFileConfigurator.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/core/configuration/OWLFileConfigurator.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -18,13 +18,11 @@
**/
package org.dllearner.core.configuration;
-
import org.dllearner.core.ComponentManager;
import org.dllearner.core.config.ConfigEntry;
import org.dllearner.core.configuration.Configurator;
import org.dllearner.kb.OWLFile;
-
/**
* automatically generated, do not edit manually
**/
@@ -33,49 +31,39 @@
OWLFile OWLFile;
private String url = null;
+public OWLFileConfigurator (OWLFile OWLFile){
+this.OWLFile = OWLFile;
+}
/**
-URL pointing to the OWL file
+* url: URL pointing to the OWL file
**/
-public void setMandatoryOptions (String url ) {
-this.url = url;
-}
-/**
-URL pointing to the OWL file
-**/
public static OWLFile getOWLFile (ComponentManager cm, String url ) {
-OWLFile component = cm.knowledgeSource(OWLFile.class);
+OWLFile component = cm.knowledgeSource(OWLFile.class );
cm.applyConfigEntry(component, "url", url);
return component;
}
-
@SuppressWarnings({ "unchecked" })
public <T> void applyConfigEntry(ConfigEntry<T> entry){
String optionName = entry.getOptionName();
-if (optionName.equals(url)){
+if(false){//empty block
+}else if (optionName.equals("url")){
url = (String) entry.getValue();
}
}
-
/**
-* URL pointing to the OWL file
-**/
-public void setUrl (String url) {
-this.url = url;
+url : URL pointing to the OWL file**/
+public String getUrl ( ) {
+return this.url;
}
-
-
/**
-* URL pointing to the OWL file
-*
-**/
-public String getUrl ( ) {
-return this.url;
+url : URL pointing to the OWL file**/
+public void setUrl ( ComponentManager cm, String url) {
+cm.applyConfigEntry(OWLFile, "url", url);
}
-
}
Modified: trunk/src/dl-learner/org/dllearner/core/configuration/SparqlKnowledgeSourceConfigurator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/configuration/SparqlKnowledgeSourceConfigurator.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/core/configuration/SparqlKnowledgeSourceConfigurator.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -18,7 +18,6 @@
**/
package org.dllearner.core.configuration;
-
import java.util.List;
import java.util.Set;
import org.dllearner.core.ComponentManager;
@@ -27,7 +26,6 @@
import org.dllearner.kb.sparql.SparqlKnowledgeSource;
import org.dllearner.utilities.datastructures.StringTuple;
-
/**
* automatically generated, do not edit manually
**/
@@ -59,440 +57,315 @@
private Set<String> defaultGraphURIs = null;
private Set<String> namedGraphURIs = null;
+public SparqlKnowledgeSourceConfigurator (SparqlKnowledgeSource SparqlKnowledgeSource){
+this.SparqlKnowledgeSource = SparqlKnowledgeSource;
+}
/**
-relevant instances e.g. positive and negative examples in a learning problem
+* instances: relevant instances e.g. positive and negative examples in a learning problem
**/
-public void setMandatoryOptions (Set<String> instances ) {
-this.instances = instances;
-}
-/**
-relevant instances e.g. positive and negative examples in a learning problem
-**/
public static SparqlKnowledgeSource getSparqlKnowledgeSource (ComponentManager cm, Set<String> instances ) {
-SparqlKnowledgeSource component = cm.knowledgeSource(SparqlKnowledgeSource.class);
+SparqlKnowledgeSource component = cm.knowledgeSource(SparqlKnowledgeSource.class );
cm.applyConfigEntry(component, "instances", instances);
return component;
}
-
@SuppressWarnings({ "unchecked" })
public <T> void applyConfigEntry(ConfigEntry<T> entry){
String optionName = entry.getOptionName();
-if (optionName.equals(url)){
+if(false){//empty block
+}else if (optionName.equals("url")){
url = (String) entry.getValue();
-}else if (optionName.equals(cacheDir)){
+}else if (optionName.equals("cacheDir")){
cacheDir = (String) entry.getValue();
-}else if (optionName.equals(instances)){
+}else if (optionName.equals("instances")){
instances = (Set<String>) entry.getValue();
-}else if (optionName.equals(recursionDepth)){
+}else if (optionName.equals("recursionDepth")){
recursionDepth = (Integer) entry.getValue();
-}else if (optionName.equals(predefinedFilter)){
+}else if (optionName.equals("predefinedFilter")){
predefinedFilter = (String) entry.getValue();
-}else if (optionName.equals(predefinedEndpoint)){
+}else if (optionName.equals("predefinedEndpoint")){
predefinedEndpoint = (String) entry.getValue();
-}else if (optionName.equals(predefinedManipulator)){
+}else if (optionName.equals("predefinedManipulator")){
predefinedManipulator = (String) entry.getValue();
-}else if (optionName.equals(predList)){
+}else if (optionName.equals("predList")){
predList = (Set<String>) entry.getValue();
-}else if (optionName.equals(objList)){
+}else if (optionName.equals("objList")){
objList = (Set<String>) entry.getValue();
-}else if (optionName.equals(classList)){
+}else if (optionName.equals("classList")){
classList = (Set<String>) entry.getValue();
-}else if (optionName.equals(format)){
+}else if (optionName.equals("format")){
format = (String) entry.getValue();
-}else if (optionName.equals(dumpToFile)){
+}else if (optionName.equals("dumpToFile")){
dumpToFile = (Boolean) entry.getValue();
-}else if (optionName.equals(convertNT2RDF)){
+}else if (optionName.equals("convertNT2RDF")){
convertNT2RDF = (Boolean) entry.getValue();
-}else if (optionName.equals(useLits)){
+}else if (optionName.equals("useLits")){
useLits = (Boolean) entry.getValue();
-}else if (optionName.equals(getAllSuperClasses)){
+}else if (optionName.equals("getAllSuperClasses")){
getAllSuperClasses = (Boolean) entry.getValue();
-}else if (optionName.equals(useCache)){
+}else if (optionName.equals("useCache")){
useCache = (Boolean) entry.getValue();
-}else if (optionName.equals(replacePredicate)){
+}else if (optionName.equals("replacePredicate")){
replacePredicate = (List<StringTuple>) entry.getValue();
-}else if (optionName.equals(replaceObject)){
+}else if (optionName.equals("replaceObject")){
replaceObject = (List<StringTuple>) entry.getValue();
-}else if (optionName.equals(breakSuperClassRetrievalAfter)){
+}else if (optionName.equals("breakSuperClassRetrievalAfter")){
breakSuperClassRetrievalAfter = (Integer) entry.getValue();
-}else if (optionName.equals(closeAfterRecursion)){
+}else if (optionName.equals("closeAfterRecursion")){
closeAfterRecursion = (Boolean) entry.getValue();
-}else if (optionName.equals(getPropertyInformation)){
+}else if (optionName.equals("getPropertyInformation")){
getPropertyInformation = (Boolean) entry.getValue();
-}else if (optionName.equals(verbosity)){
+}else if (optionName.equals("verbosity")){
verbosity = (String) entry.getValue();
-}else if (optionName.equals(defaultGraphURIs)){
+}else if (optionName.equals("defaultGraphURIs")){
defaultGraphURIs = (Set<String>) entry.getValue();
-}else if (optionName.equals(namedGraphURIs)){
+}else if (optionName.equals("namedGraphURIs")){
namedGraphURIs = (Set<String>) entry.getValue();
}
}
-
/**
-* URL of SPARQL Endpoint
-**/
-public void setUrl (String url) {
-this.url = url;
+url : URL of SPARQL Endpoint**/
+public String getUrl ( ) {
+return this.url;
}
-
/**
-* dir of cache
-**/
-public void setCacheDir (String cacheDir) {
-this.cacheDir = cacheDir;
+cacheDir : dir of cache**/
+public String getCacheDir ( ) {
+return this.cacheDir;
}
-
/**
-* relevant instances e.g. positive and negative examples in a learning problem
-**/
-public void setInstances (Set<String> instances) {
-this.instances = instances;
+instances : relevant instances e.g. positive and negative examples in a learning problem**/
+public Set<String> getInstances ( ) {
+return this.instances;
}
-
/**
-* recursion depth of KB fragment selection
-**/
-public void setRecursionDepth (int recursionDepth) {
-this.recursionDepth = recursionDepth;
+recursionDepth : recursion depth of KB fragment selection**/
+public int getRecursionDepth ( ) {
+return this.recursionDepth;
}
-
/**
-* the mode of the SPARQL Filter, use one of YAGO,SKOS,YAGOSKOS , YAGOSPECIALHIERARCHY, TEST
-**/
-public void setPredefinedFilter (String predefinedFilter) {
-this.predefinedFilter = predefinedFilter;
+predefinedFilter : the mode of the SPARQL Filter, use one of YAGO,SKOS,YAGOSKOS , YAGOSPECIALHIERARCHY, TEST**/
+public String getPredefinedFilter ( ) {
+return this.predefinedFilter;
}
-
/**
-* the mode of the SPARQL Filter, use one of DBPEDIA, LOCAL, GOVTRACK, REVYU, MYOPENLINK, FACTBOOK
-**/
-public void setPredefinedEndpoint (String predefinedEndpoint) {
-this.predefinedEndpoint = predefinedEndpoint;
+predefinedEndpoint : the mode of the SPARQL Filter, use one of DBPEDIA, LOCAL, GOVTRACK, REVYU, MYOPENLINK, FACTBOOK**/
+public String getPredefinedEndpoint ( ) {
+return this.predefinedEndpoint;
}
-
/**
-* the mode of the Manipulator, use one of STANDARD, DBPEDIA-NAVIGATOR
-**/
-public void setPredefinedManipulator (String predefinedManipulator) {
-this.predefinedManipulator = predefinedManipulator;
+predefinedManipulator : the mode of the Manipulator, use one of STANDARD, DBPEDIA-NAVIGATOR**/
+public String getPredefinedManipulator ( ) {
+return this.predefinedManipulator;
}
-
/**
-* list of all ignored roles
-**/
-public void setPredList (Set<String> predList) {
-this.predList = predList;
+predList : list of all ignored roles**/
+public Set<String> getPredList ( ) {
+return this.predList;
}
-
/**
-* list of all ignored objects
-**/
-public void setObjList (Set<String> objList) {
-this.objList = objList;
+objList : list of all ignored objects**/
+public Set<String> getObjList ( ) {
+return this.objList;
}
-
/**
-* list of all ignored classes
-**/
-public void setClassList (Set<String> classList) {
-this.classList = classList;
+classList : list of all ignored classes**/
+public Set<String> getClassList ( ) {
+return this.classList;
}
-
/**
-* N-TRIPLES or KB format
-**/
-public void setFormat (String format) {
-this.format = format;
+format : N-TRIPLES or KB format**/
+public String getFormat ( ) {
+return this.format;
}
-
/**
-* Specifies whether the extracted ontology is written to a file or not.
-**/
-public void setDumpToFile (boolean dumpToFile) {
-this.dumpToFile = dumpToFile;
+dumpToFile : Specifies whether the extracted ontology is written to a file or not.**/
+public boolean getDumpToFile ( ) {
+return this.dumpToFile;
}
-
/**
-* Specifies whether the extracted NTriples are converted to RDF and deleted.
-**/
-public void setConvertNT2RDF (boolean convertNT2RDF) {
-this.convertNT2RDF = convertNT2RDF;
+convertNT2RDF : Specifies whether the extracted NTriples are converted to RDF and deleted.**/
+public boolean getConvertNT2RDF ( ) {
+return this.convertNT2RDF;
}
-
/**
-* use Literals in SPARQL query
-**/
-public void setUseLits (boolean useLits) {
-this.useLits = useLits;
+useLits : use Literals in SPARQL query**/
+public boolean getUseLits ( ) {
+return this.useLits;
}
-
/**
-* If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.
-**/
-public void setGetAllSuperClasses (boolean getAllSuperClasses) {
-this.getAllSuperClasses = getAllSuperClasses;
+getAllSuperClasses : If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.**/
+public boolean getGetAllSuperClasses ( ) {
+return this.getAllSuperClasses;
}
-
/**
-* If true a Cache is used
-**/
-public void setUseCache (boolean useCache) {
-this.useCache = useCache;
+useCache : If true a Cache is used**/
+public boolean getUseCache ( ) {
+return this.useCache;
}
-
/**
-* rule for replacing predicates
-**/
-public void setReplacePredicate (List<StringTuple> replacePredicate) {
-this.replacePredicate = replacePredicate;
+replacePredicate : rule for replacing predicates**/
+public List<StringTuple> getReplacePredicate ( ) {
+return this.replacePredicate;
}
-
/**
-* rule for replacing predicates
-**/
-public void setReplaceObject (List<StringTuple> replaceObject) {
-this.replaceObject = replaceObject;
+replaceObject : rule for replacing predicates**/
+public List<StringTuple> getReplaceObject ( ) {
+return this.replaceObject;
}
-
/**
-* stops a cyclic hierarchy after specified number of classes
-**/
-public void setBreakSuperClassRetrievalAfter (int breakSuperClassRetrievalAfter) {
-this.breakSuperClassRetrievalAfter = breakSuperClassRetrievalAfter;
+breakSuperClassRetrievalAfter : stops a cyclic hierarchy after specified number of classes**/
+public int getBreakSuperClassRetrievalAfter ( ) {
+return this.breakSuperClassRetrievalAfter;
}
-
/**
-* gets all classes for all instances
-**/
-public void setCloseAfterRecursion (boolean closeAfterRecursion) {
-this.closeAfterRecursion = closeAfterRecursion;
+closeAfterRecursion : gets all classes for all instances**/
+public boolean getCloseAfterRecursion ( ) {
+return this.closeAfterRecursion;
}
-
/**
-* gets all types for extracted ObjectProperties
-**/
-public void setGetPropertyInformation (boolean getPropertyInformation) {
-this.getPropertyInformation = getPropertyInformation;
+getPropertyInformation : gets all types for extracted ObjectProperties**/
+public boolean getGetPropertyInformation ( ) {
+return this.getPropertyInformation;
}
-
/**
-* control verbosity of output for this component
-**/
-public void setVerbosity (String verbosity) {
-this.verbosity = verbosity;
+verbosity : control verbosity of output for this component**/
+public String getVerbosity ( ) {
+return this.verbosity;
}
-
/**
-* a list of all default Graph URIs
-**/
-public void setDefaultGraphURIs (Set<String> defaultGraphURIs) {
-this.defaultGraphURIs = defaultGraphURIs;
+defaultGraphURIs : a list of all default Graph URIs**/
+public Set<String> getDefaultGraphURIs ( ) {
+return this.defaultGraphURIs;
}
-
/**
-* a list of all named Graph URIs
-**/
-public void setNamedGraphURIs (Set<String> namedGraphURIs) {
-this.namedGraphURIs = namedGraphURIs;
+namedGraphURIs : a list of all named Graph URIs**/
+public Set<String> getNamedGraphURIs ( ) {
+return this.namedGraphURIs;
}
-
-
/**
-* URL of SPARQL Endpoint
-*
-**/
-public String getUrl ( ) {
-return this.url;
+url : URL of SPARQL Endpoint**/
+public void setUrl ( ComponentManager cm, String url) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "url", url);
}
-
/**
-* dir of cache
-*
-**/
-public String getCacheDir ( ) {
-return this.cacheDir;
+cacheDir : dir of cache**/
+public void setCacheDir ( ComponentManager cm, String cacheDir) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "cacheDir", cacheDir);
}
-
/**
-* relevant instances e.g. positive and negative examples in a learning problem
-*
-**/
-public Set<String> getInstances ( ) {
-return this.instances;
+instances : relevant instances e.g. positive and negative examples in a learning problem**/
+public void setInstances ( ComponentManager cm, Set<String> instances) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "instances", instances);
}
-
/**
-* recursion depth of KB fragment selection
-*
-**/
-public int getRecursionDepth ( ) {
-return this.recursionDepth;
+recursionDepth : recursion depth of KB fragment selection**/
+public void setRecursionDepth ( ComponentManager cm, int recursionDepth) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "recursionDepth", recursionDepth);
}
-
/**
-* the mode of the SPARQL Filter, use one of YAGO,SKOS,YAGOSKOS , YAGOSPECIALHIERARCHY, TEST
-*
-**/
-public String getPredefinedFilter ( ) {
-return this.predefinedFilter;
+predefinedFilter : the mode of the SPARQL Filter, use one of YAGO,SKOS,YAGOSKOS , YAGOSPECIALHIERARCHY, TEST**/
+public void setPredefinedFilter ( ComponentManager cm, String predefinedFilter) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "predefinedFilter", predefinedFilter);
}
-
/**
-* the mode of the SPARQL Filter, use one of DBPEDIA, LOCAL, GOVTRACK, REVYU, MYOPENLINK, FACTBOOK
-*
-**/
-public String getPredefinedEndpoint ( ) {
-return this.predefinedEndpoint;
+predefinedEndpoint : the mode of the SPARQL Filter, use one of DBPEDIA, LOCAL, GOVTRACK, REVYU, MYOPENLINK, FACTBOOK**/
+public void setPredefinedEndpoint ( ComponentManager cm, String predefinedEndpoint) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "predefinedEndpoint", predefinedEndpoint);
}
-
/**
-* the mode of the Manipulator, use one of STANDARD, DBPEDIA-NAVIGATOR
-*
-**/
-public String getPredefinedManipulator ( ) {
-return this.predefinedManipulator;
+predefinedManipulator : the mode of the Manipulator, use one of STANDARD, DBPEDIA-NAVIGATOR**/
+public void setPredefinedManipulator ( ComponentManager cm, String predefinedManipulator) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "predefinedManipulator", predefinedManipulator);
}
-
/**
-* list of all ignored roles
-*
-**/
-public Set<String> getPredList ( ) {
-return this.predList;
+predList : list of all ignored roles**/
+public void setPredList ( ComponentManager cm, Set<String> predList) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "predList", predList);
}
-
/**
-* list of all ignored objects
-*
-**/
-public Set<String> getObjList ( ) {
-return this.objList;
+objList : list of all ignored objects**/
+public void setObjList ( ComponentManager cm, Set<String> objList) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "objList", objList);
}
-
/**
-* list of all ignored classes
-*
-**/
-public Set<String> getClassList ( ) {
-return this.classList;
+classList : list of all ignored classes**/
+public void setClassList ( ComponentManager cm, Set<String> classList) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "classList", classList);
}
-
/**
-* N-TRIPLES or KB format
-*
-**/
-public String getFormat ( ) {
-return this.format;
+format : N-TRIPLES or KB format**/
+public void setFormat ( ComponentManager cm, String format) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "format", format);
}
-
/**
-* Specifies whether the extracted ontology is written to a file or not.
-*
-**/
-public boolean getDumpToFile ( ) {
-return this.dumpToFile;
+dumpToFile : Specifies whether the extracted ontology is written to a file or not.**/
+public void setDumpToFile ( ComponentManager cm, boolean dumpToFile) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "dumpToFile", dumpToFile);
}
-
/**
-* Specifies whether the extracted NTriples are converted to RDF and deleted.
-*
-**/
-public boolean getConvertNT2RDF ( ) {
-return this.convertNT2RDF;
+convertNT2RDF : Specifies whether the extracted NTriples are converted to RDF and deleted.**/
+public void setConvertNT2RDF ( ComponentManager cm, boolean convertNT2RDF) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "convertNT2RDF", convertNT2RDF);
}
-
/**
-* use Literals in SPARQL query
-*
-**/
-public boolean getUseLits ( ) {
-return this.useLits;
+useLits : use Literals in SPARQL query**/
+public void setUseLits ( ComponentManager cm, boolean useLits) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "useLits", useLits);
}
-
/**
-* If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.
-*
-**/
-public boolean getGetAllSuperClasses ( ) {
-return this.getAllSuperClasses;
+getAllSuperClasses : If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.**/
+public void setGetAllSuperClasses ( ComponentManager cm, boolean getAllSuperClasses) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "getAllSuperClasses", getAllSuperClasses);
}
-
/**
-* If true a Cache is used
-*
-**/
-public boolean getUseCache ( ) {
-return this.useCache;
+useCache : If true a Cache is used**/
+public void setUseCache ( ComponentManager cm, boolean useCache) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "useCache", useCache);
}
-
/**
-* rule for replacing predicates
-*
-**/
-public List<StringTuple> getReplacePredicate ( ) {
-return this.replacePredicate;
+replacePredicate : rule for replacing predicates**/
+public void setReplacePredicate ( ComponentManager cm, List<StringTuple> replacePredicate) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "replacePredicate", replacePredicate);
}
-
/**
-* rule for replacing predicates
-*
-**/
-public List<StringTuple> getReplaceObject ( ) {
-return this.replaceObject;
+replaceObject : rule for replacing predicates**/
+public void setReplaceObject ( ComponentManager cm, List<StringTuple> replaceObject) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "replaceObject", replaceObject);
}
-
/**
-* stops a cyclic hierarchy after specified number of classes
-*
-**/
-public int getBreakSuperClassRetrievalAfter ( ) {
-return this.breakSuperClassRetrievalAfter;
+breakSuperClassRetrievalAfter : stops a cyclic hierarchy after specified number of classes**/
+public void setBreakSuperClassRetrievalAfter ( ComponentManager cm, int breakSuperClassRetrievalAfter) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "breakSuperClassRetrievalAfter", breakSuperClassRetrievalAfter);
}
-
/**
-* gets all classes for all instances
-*
-**/
-public boolean getCloseAfterRecursion ( ) {
-return this.closeAfterRecursion;
+closeAfterRecursion : gets all classes for all instances**/
+public void setCloseAfterRecursion ( ComponentManager cm, boolean closeAfterRecursion) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "closeAfterRecursion", closeAfterRecursion);
}
-
/**
-* gets all types for extracted ObjectProperties
-*
-**/
-public boolean getGetPropertyInformation ( ) {
-return this.getPropertyInformation;
+getPropertyInformation : gets all types for extracted ObjectProperties**/
+public void setGetPropertyInformation ( ComponentManager cm, boolean getPropertyInformation) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "getPropertyInformation", getPropertyInformation);
}
-
/**
-* control verbosity of output for this component
-*
-**/
-public String getVerbosity ( ) {
-return this.verbosity;
+verbosity : control verbosity of output for this component**/
+public void setVerbosity ( ComponentManager cm, String verbosity) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "verbosity", verbosity);
}
-
/**
-* a list of all default Graph URIs
-*
-**/
-public Set<String> getDefaultGraphURIs ( ) {
-return this.defaultGraphURIs;
+defaultGraphURIs : a list of all default Graph URIs**/
+public void setDefaultGraphURIs ( ComponentManager cm, Set<String> defaultGraphURIs) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "defaultGraphURIs", defaultGraphURIs);
}
-
/**
-* a list of all named Graph URIs
-*
-**/
-public Set<String> getNamedGraphURIs ( ) {
-return this.namedGraphURIs;
+namedGraphURIs : a list of all named Graph URIs**/
+public void setNamedGraphURIs ( ComponentManager cm, Set<String> namedGraphURIs) {
+cm.applyConfigEntry(SparqlKnowledgeSource, "namedGraphURIs", namedGraphURIs);
}
-
}
Modified: trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/OWLFile.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/kb/OWLFile.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -45,7 +45,7 @@
public class OWLFile extends KnowledgeSource {
private URL url;
- private OWLFileConfigurator configurator = new OWLFileConfigurator();
+ private OWLFileConfigurator configurator ;
public OWLFileConfigurator getOWLFileConfigurator(){
return configurator;
}
@@ -54,6 +54,9 @@
return "OWL file";
}
+ public OWLFile(){
+ configurator = new OWLFileConfigurator(this);
+ }
public static Collection<ConfigOption<?>> createConfigOptions() {
@@ -67,19 +70,24 @@
*/
@Override
public <T> void applyConfigEntry(ConfigEntry<T> entry) throws InvalidConfigOptionValueException {
+ configurator.applyConfigEntry(entry);
+
+ //postprocessing
if (entry.getOptionName().equals("url")) {
- String s = (String) entry.getValue();
try {
- url = new URL(s);
- // File f = new File(url.toURI());
- //if(!f.canRead())
- // throw new InvalidConfigOptionValueException(entry.getOption(), entry.getValue());
+ url = new URL(configurator.getUrl());
} catch (MalformedURLException e) {
- throw new InvalidConfigOptionValueException(entry.getOption(), entry.getValue(),"malformed URL " + s);
- } //catch (URISyntaxException e) {
- // TODO Auto-generated catch block
- //e.printStackTrace();
- //}
+ throw new InvalidConfigOptionValueException(entry.getOption(), entry.getValue(),"malformed URL " + configurator.getUrl());
+ }
+
+// File f = new File(url.toURI());
+//if(!f.canRead())
+// throw new InvalidConfigOptionValueException(entry.getOption(), entry.getValue());
+// String s = (String) entry.getValue();
+//catch (URISyntaxException e) {
+//e.printStackTrace();
+//}
+
}
}
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -46,7 +46,6 @@
import org.dllearner.core.config.StringSetConfigOption;
import org.dllearner.core.config.StringTupleListConfigOption;
import org.dllearner.core.config.ConfigOption.Tags;
-import org.dllearner.core.configuration.OWLFileConfigurator;
import org.dllearner.core.configuration.SparqlKnowledgeSourceConfigurator;
import org.dllearner.core.owl.KB;
import org.dllearner.kb.aquisitors.SparqlTupleAquisitor;
@@ -85,11 +84,16 @@
static final boolean debugUseImprovedTupleAquisitor = debug && false; //switches tupleaquisitor
static final boolean debugExitAfterExtraction = debug && false; //switches sysex und rdf generation
- private SparqlKnowledgeSourceConfigurator configurator = new SparqlKnowledgeSourceConfigurator();
+ private SparqlKnowledgeSourceConfigurator configurator;
+
public SparqlKnowledgeSourceConfigurator getSparqlKnowledgeSourceConfigurator(){
return configurator;
}
+/*public SparqlKnowledgeSource (){
+ this.configurator = new SparqlKnowledgeSourceConfigurator(this);
+ }
+*/
private boolean useCache=true;
// ConfigOptions
public URL url;
Modified: trunk/src/dl-learner/org/dllearner/scripts/ConfigJavaGenerator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/scripts/ConfigJavaGenerator.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/scripts/ConfigJavaGenerator.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -20,13 +20,23 @@
package org.dllearner.scripts;
import java.io.File;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.LinkedHashMap;
import java.util.LinkedList;
import java.util.List;
+import java.util.Map;
import java.util.SortedSet;
import java.util.TreeSet;
+import org.apache.commons.collections.map.LinkedMap;
+import org.dllearner.core.Component;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
import org.dllearner.core.config.ConfigEntry;
import org.dllearner.core.config.ConfigOption;
import org.dllearner.core.configuration.Configurator;
@@ -51,256 +61,361 @@
private static final String TEMPLATE_DIR = "doc/template/";
- private static final String CLASSADDITION = "Configurator";
+ private static final String CONFIGURATOR = "Configurator";
private static final SortedSet<String> configuratorImports = new TreeSet<String>();
- private static final SortedSet<String> configuratorMethods = new TreeSet<String>();
+ private static final List<String> configuratorMethods = new ArrayList<String>();
+
+ Class<? extends Component> component;
+ String className;
+ String componentType;
+ List<String> body = new ArrayList<String>();
+ List<String> vars = new ArrayList<String>();
+ List<String> setters = new ArrayList<String>();
+ List<String> getters = new ArrayList<String>();
+ SortedSet<String> imports = new TreeSet<String>();
+ Map<String,String> additionalMandatoryVars = new LinkedHashMap<String, String>();
+ Map<String,String> mandatoryVars = new LinkedHashMap<String, String>();
+ Map<String,String> varMap = new LinkedHashMap<String, String>();
+
+ List<ConfigOption<?>> mandatoryOptions = new LinkedList<ConfigOption<?>>();
+
/**
* @param args
*/
public static void main(String[] args) {
+ Files.backupDirectory(TARGET_DIR);
+ //System.exit(0);
Files.deleteDir(TARGET_DIR);
-
+
ComponentManager cm = ComponentManager.getInstance();
configuratorImports.add(ComponentManager.class.getCanonicalName());
-
+ configuratorImports.add(KnowledgeSource.class.getCanonicalName());
+ configuratorImports.add(ReasonerComponent.class.getCanonicalName());
+ configuratorImports.add(ReasoningService.class.getCanonicalName());
+ configuratorImports.add(LearningProblem.class.getCanonicalName());
+ configuratorImports.add(LearningAlgorithm.class.getCanonicalName());
for (Class<? extends KnowledgeSource> component : cm
.getKnowledgeSources()) {
String componentType = "knowledgeSource";
+
+
if (component.getSimpleName().equalsIgnoreCase(
"OWLFile")) {
configuratorImports.add(component.getCanonicalName());
- configuratorImports.add("org.dllearner.core.configuration."+component.getSimpleName()+CLASSADDITION);
- make (component, componentType);
+ configuratorImports.add("org.dllearner.core.configuration."+component.getSimpleName()+CONFIGURATOR);
+ ConfigJavaGenerator c = new ConfigJavaGenerator(component, componentType);
+
+ c.makeSubclasses();
+
}if (component.getSimpleName().equalsIgnoreCase(
"SparqlKnowledgeSource")) {
configuratorImports.add(component.getCanonicalName());
- configuratorImports.add("org.dllearner.core.configuration."+component.getSimpleName()+CLASSADDITION);
- make (component, componentType);
+ configuratorImports.add("org.dllearner.core.configuration."+component.getSimpleName()+CONFIGURATOR);
+ ConfigJavaGenerator c = new ConfigJavaGenerator(component, componentType);
+ c.makeSubclasses();
}
}
+ for (Class<? extends ReasonerComponent> component : cm.getReasonerComponents()) {
+
+
+ if (component.getSimpleName().equalsIgnoreCase(
+ "FastInstanceChecker")) {
+ configuratorImports.add(component.getCanonicalName());
+ configuratorImports.add("org.dllearner.core.configuration."+component.getSimpleName()+CONFIGURATOR);
+
+ ConfigJavaGenerator c = new ConfigJavaGenerator(component, "reasoner");
+ c.imports.add("org.dllearner.core.KnowledgeSource");
+ c.additionalMandatoryVars.put("KnowledgeSource knowledgeSource","knowledgeSource");
+ c.makeSubclasses();
+
+ }
+
+
+ }
+
+
makeConfiguratorSuperClass();
System.out.println("Done");
}
- public static void makeConfiguratorSuperClass(){
- StringBuffer current = new StringBuffer();
- current.append(HEADER+"\n");
- current.append("package org.dllearner.core.configuration;\n\n");
- for (String string : configuratorImports) {
- current.append("import "+string+";\n");
- }
- current.append("\n"+getClassComment());
- current.append("public class "+CLASSADDITION+" {\n\n");
- for (String string : configuratorMethods) {
- current.append(string+"\n");
- }
- current.append("}\n");
- Files.createFile(new File(TARGET_DIR + "/" + CLASSADDITION + ".java"), current.toString());
- }
-
- public static void make(Class<? extends KnowledgeSource> component, String componentType){
- StringBuffer current = new StringBuffer();
- StringBuffer vars = new StringBuffer();
- StringBuffer setters = new StringBuffer();
- StringBuffer getters = new StringBuffer();
- SortedSet<String> imports = new TreeSet<String>();
- String className = component.getSimpleName();
- List<ConfigOption<?>> mandatoryOptions = new LinkedList<ConfigOption<?>>();
-
+ public ConfigJavaGenerator (Class<? extends Component> component, String componentType){
+ className = component.getSimpleName();
+ this.component = component;
+ this.componentType = componentType;
imports.add(component.getCanonicalName());
imports.add(ComponentManager.class.getCanonicalName());
imports.add(Configurator.class.getCanonicalName());
imports.add(ConfigEntry.class.getCanonicalName());
+
+ vars.add(className+" "+className+";\n");
+
+ }
+
+ public void makeSubclasses(){
+
+
+
//imports.add("import "+ConfigOption.class.getCanonicalName()+";");
+ //vars.put(key, value)
+ //vars.add(className+" "+ className+";\n");
- vars.append(className+" "+ className+";\n");
- current.append(HEADER + "\n");
- current.append("package org.dllearner.core.configuration;\n\n");
for (ConfigOption<?> option : ComponentManager
.getConfigOptions(component)) {
+
+ String type = option.getValueTypeAsJavaString();
+ String optionName = option.getName();
+ String defaultValue = option.getDefaultValueInJava();
+ String comment = option.getDescription();
+
if(option.isMandatory()){
+ mandatoryVars.put(type + " " + optionName , optionName);
mandatoryOptions.add(option);
configuratorImports.addAll(option.getJavaImports());
- }
+ }
imports.addAll(option.getJavaImports());
- vars.append(getVarDef(option));
- setters.append(getSetter(option));
- getters.append(getGetter(option));
+ vars.add(fillVariableDefTemplate(optionName, type, defaultValue));
+ setters.add(fillSetterTemplate(className, comment, optionName, type));
+ getters.add(fillGetterTemplate(comment, optionName, type));
// System.out.println(option);
// componentOptions.get(component)) {
}
- for (String string : imports) {
- current.append("import "+string+";\n");
- }
- current.append("\n\n");
- current.append(getClassDefinition(className));
- current.append(vars);
- current.append("\n\n");
- current.append(getMandatoryFunctions(className, componentType, mandatoryOptions));
- current.append("\n\n");
- current.append(makeApplyConfigEntry(ComponentManager.getConfigOptions(component)));
- current.append("\n\n");
- current.append(setters+"\n\n"+getters+"\n\n");
- current.append("}\n");
- configuratorMethods.add(getSuperClassFunction(className, componentType, mandatoryOptions));
+
+
+ body.add(expandCollection(vars, "", "", 0));
+ body.add(fillConstructorTemplate(className));
+
+ body.add(makeGetInstanceForSubclass(className, componentType,
+ getAllCommentsForOptionList(mandatoryOptions)));
+
+ body.add(makeApplyConfigEntryForOptionList(ComponentManager.getConfigOptions(component)));
+
+ body.add(expandCollection(getters, "", "", 0));
+ body.add(expandCollection(setters, "", "", 0));
+ String ret = fillClassTemplate(
+ "org.dllearner.core.configuration",
+ expandCollection(imports, "import ", ";\n", 0),
+ className+CONFIGURATOR,
+ CONFIGURATOR,
+ expandCollection(body, "", "\n", 0) );
+
+
+
+
+
+ //configuratorMethods.add((className, componentType, mandatoryOptions));
+
Files.createFile(new File(TARGET_DIR + "/" + className
- + CLASSADDITION + ".java"), current.toString());
+ + CONFIGURATOR + ".java"), ret);
+
+ configuratorMethods.add(
+ makeSuperConfiguratorMethods(
+ className,
+ componentType,
+ getAllCommentsForOptionList(mandatoryOptions)));
}
- private static String getConstructor(String className){
- return "";
- }
- public static String makeApplyConfigEntry(List<ConfigOption<?>> options){
+
+ public static String makeApplyConfigEntryForOptionList(List<ConfigOption<?>> options){
String ret ="@SuppressWarnings({ \"unchecked\" })\n" +
"public <T> void applyConfigEntry(ConfigEntry<T> entry){\n";
ret+="String optionName = entry.getOptionName();\n";
//ret+="ConfigOption<T> option = entry.getOption();\n";
- if(!options.isEmpty()){
- ConfigOption<?> first = options.remove(0);
- ret+="if (optionName.equals("+first.getName()+")){\n" +
- ""+first.getName()+" = ("+rightType(first.getValueTypeAsJavaString())+") " +
- " entry.getValue();\n";
- }
+ ret+="if(false){//empty block \n}";
+
for (ConfigOption<?> option : options) {
- ret+="}else if (optionName.equals("+option.getName()+")){\n";
+ ret+="else if (optionName.equals(\""+option.getName()+"\")){\n";
ret+=""+option.getName()+" = ("+rightType(option.getValueTypeAsJavaString())+") " +
- " entry.getValue();\n";
+ " entry.getValue();\n}";
}
- ret+="}\n}\n";
+ ret+="\n}\n";
return ret;
}
- public static String rightType(String type){
- if(type.equals("int"))return "Integer";
- else if(type.equals("boolean"))return "Boolean";
- else return type;
+
+ private static String getAllCommentsForOptionList(List<ConfigOption<?>> options){
+ String ret = "";
+ for (ConfigOption<?> option : options) {
+ ret+="* "+option.getName()+": "+option.getDescription()+"\n";
+ }
+ return fillJavaDocComment(ret);
}
- private static String getMandatoryFunctionComment(List<ConfigOption<?>> options){
- String ret = "/**\n";
- for (ConfigOption<?> option : options) {
- ret+=option.getDescription()+"\n";
+ private String makeGetInstanceForSubclass(String className, String componentType,
+ String comments){
+ Map<String, String> parametersWithType = new LinkedHashMap<String,String>();
+ Map<String, String> parametersNoType = new LinkedHashMap<String,String>();
+ String applyConf = "";
+ parametersWithType.put("ComponentManager cm", "cm");
+ parametersNoType.put(className+".class", className+".class");
+ for (String s : additionalMandatoryVars.keySet()) {
+ parametersWithType.put(s, additionalMandatoryVars.get(s));
+ parametersNoType.put(s, additionalMandatoryVars.get(s));
}
- ret+="**/\n";
+ for (String s : mandatoryVars.keySet()) {
+ parametersWithType.put(s, mandatoryVars.get(s));
+ applyConf += fillApplyConfigEntry("component", mandatoryVars.get(s))+"";
+ }
+
+ String parWithType = expandCollection(parametersWithType.keySet(), "", ", ", 2);
+
+ String par = expandCollection(parametersNoType.values(), "", ", ", 2);
+
+ //TODO
+ String ret = comments;
+ ret += "public static "+className+" get"+className+" ("+parWithType+" ) {\n";
+ ret += className+" component = cm."+componentType+"(" +par+" );\n";
+ ret += applyConf;
+
+ ret+="return component;\n}\n";
return ret;
}
- private static String getMandatoryFunctions(String className, String componentType, List<ConfigOption<?>> options){
- String mandParametersWithType = getMandatoryParameters(options, true);
- //String mandParametersNoType = getMandatoryParameters(options, false);
- String mandFunctionBody = mandatoryFunctionBody(options);
- String ret= getMandatoryFunctionComment(options);
- ret += "public void setMandatoryOptions ("+mandParametersWithType+" ) {\n" +
- ""+mandFunctionBody+"}\n";
+ private String makeSuperConfiguratorMethods(
+ String className, String componentType, String comments){
- ret+= getMandatoryFunctionComment(options);
- ret+= "public static "+className+" get"+className+" (ComponentManager cm, "+mandParametersWithType+" ) {\n" +
- className+" component = cm."+componentType+"("+className+".class);\n";
- for (ConfigOption<?> option : options) {
- ret+="cm.applyConfigEntry(component, \""+option.getName()+"\", "+option.getName()+");\n";
+ Map<String, String> parametersWithType = new LinkedHashMap<String,String>();
+ Map<String, String> parametersNoType = new LinkedHashMap<String,String>();
+ String applyConf = "";
+ parametersWithType.put("ComponentManager cm", "cm");
+ parametersNoType.put(className+".class", className+".class");
+ for (String s : additionalMandatoryVars.keySet()) {
+ parametersWithType.put(s, additionalMandatoryVars.get(s));
+ parametersNoType.put(s, additionalMandatoryVars.get(s));
}
+ for (String s : mandatoryVars.keySet()) {
+ parametersWithType.put(s, mandatoryVars.get(s));
+ applyConf += fillApplyConfigEntry("component", mandatoryVars.get(s))+"";
+ }
- ret+="return component;\n}\n";
+ String parWithType = expandCollection(parametersWithType.keySet(), "", ", ", 2);
+
+ String par = expandCollection(parametersWithType.values(), "", ", ", 2);
+
+ String ret = comments;
+ ret += "public static "+className+" get"+className+" ("+parWithType+" ) {\n" +
+ "return "+ className+CONFIGURATOR+".get"+className+"("+par+");\n}\n";
return ret;
}
- private static String getSuperClassFunction(String className, String componentType, List<ConfigOption<?>> options){
- String mandParametersWithType = getMandatoryParameters(options, true);
- String mandParametersNoType = getMandatoryParameters(options, false);
- //String mandFunctionBody = mandatoryFunctionBody(options);
- String ret = getMandatoryFunctionComment(options);
- ret += "public static "+className+" get"+className+" (ComponentManager cm, "+mandParametersWithType+" ) {\n" +
- "return "+ className+CLASSADDITION+".get"+className+"(cm, "+mandParametersNoType+");\n}\n";
- return ret;
+ public static void makeConfiguratorSuperClass(){
+ String ret=
+ fillClassTemplate(
+ "org.dllearner.core.configuration",
+ expandCollection(configuratorImports, "import ", ";\n",0),
+ CONFIGURATOR,
+ "",
+ expandCollection(configuratorMethods, "", "\n", 0)
+ );
+
+
+ Files.createFile(new File(TARGET_DIR + "/" + CONFIGURATOR + ".java"), ret);
}
- public static String getMandatoryParameters (List<ConfigOption<?>> options, boolean includeType){
- if(options.isEmpty())return "";
- String ret = "";
- String type = "";
- for (ConfigOption<?> option : options) {
- type = (includeType)?option.getValueTypeAsJavaString():"";
- ret += type + " " + option.getName()+", ";
- }
- ret = ret.substring(0,ret.length()-2);
- return ret;
+
+
+ private static String fillApplyConfigEntry(String className, String optionName){
+ return "cm.applyConfigEntry("+className+", \""+optionName+"\", "+optionName+");\n";
}
- private static String mandatoryFunctionBody(List<ConfigOption<?>> options){
- String ret = "";
- for (ConfigOption<?> option : options) {
- ret += "this."+option.getName()+" = "+option.getName()+";\n";
- }
- return ret;
+ private static String fillConstructorTemplate(String className){
+ return "public "+className+CONFIGURATOR+" ("+className+" "+className+"){\n" +
+ "this."+className+" = "+className+";\n" +
+ "}\n";
}
- private static String getVarDef(ConfigOption<?> option) {
- return "private " + option.getValueTypeAsJavaString() + " "
- + option.getName() + " = " + option.getDefaultValueInJava()
+ private static String fillVariableDefTemplate(String optionName, String type, String defaultValue) {
+ return "private " + type + " "
+ + optionName + " = " + defaultValue
+ ";\n";
}
+
+ private static String fillJavaDocComment(String lines){
+ return "/**\n"+lines+"**/\n";
+ }
- private static String getSetter(ConfigOption<?> option) {
- String s = option.getName().substring(0, 1);
- s = s.toUpperCase() + option.getName().substring(1);
- String comment = "/**\n" +
- "* "+option.getDescription()+"\n" +
- "**/\n";
+
+
+ private static String fillGetterTemplate( String comment, String optionName, String type) {
+ String ret = fillJavaDocComment (optionName+" : "+comment);
+ ret+= "public "+type+" get" + capitalize(optionName) + " ( ) {\n";
+ ret+= "return this." + optionName+";\n";
+ ret+= "}\n";
+ return ret;
+ }
+ private static String fillSetterTemplate(String className, String comment, String optionName, String type ){
+ String ret = fillJavaDocComment (optionName+" : "+comment);
+ ret += "public void set" + capitalize(optionName);
+ ret += " ( ComponentManager cm, " + type +" "+ optionName+") {\n";
+ ret += fillApplyConfigEntry(className, optionName);
+ ret += "}\n" ;
+ return ret;
+ }
+
+
+
+ private static String fillClassTemplate(String Package, String imports, String className, String Extends, String body){
+ String ret = HEADER +"\n";
+ ret += "package "+Package+";\n";
+ ret += imports+"\n";
+ ret += fillJavaDocComment("* automatically generated, do not edit manually\n");
+ ret += "public class "+className+" "+((Extends.length()>0)?"extends "+Extends:"")+" {\n\n";
+ ret += body+"\n";
+ ret +="}\n";
+ return ret;
- return comment + "public void set" + s + " (" + option.getValueTypeAsJavaString()
- + " "+option.getName()+") {\n" +
- "this." + option.getName()+" = "+ option.getName()+
- ";\n" +
- "}\n\n";
-
}
- private static String getGetter(ConfigOption<?> option) {
- String s = option.getName().substring(0, 1);
- s = s.toUpperCase() + option.getName().substring(1);
- String comment = "/**\n" +
- "* "+option.getDescription()+"\n" +
- "* \n" +
- "**/\n";
+
+
+ private static String expandCollection (Collection<String> col, String before, String after, int removeChars){
+ if(col.isEmpty())return "";
+ String ret ="";
+ for (String string : col) {
+ ret+= before+string+after;
+ }
+
+ if(removeChars==0){
+ return ret;
+ }else {
+ return ret.substring(0, ret.length()-removeChars);
+ }
+ }
- return comment + "public "+option.getValueTypeAsJavaString()+" get" + s + " ( ) {\n" +
- "return this." + option.getName()+";\n" +
- "}\n\n";
-
+
+
+ private static String capitalize(String s){
+ String tmp = s.substring(0, 1);
+ return tmp.toUpperCase() + s.substring(1);
}
-
- private static String getClassDefinition(String className) {
- String ret = getClassComment()
- + "public class " + className + CLASSADDITION + " extends Configurator {\n" + "\n";
- return ret;
+
+ public static String rightType(String type){
+ if(type.equals("int"))return "Integer";
+ else if(type.equals("boolean"))return "Boolean";
+ else return type;
+
}
- private static String getClassComment(){
- return "" + "/**\n"
- + "* automatically generated, do not edit manually\n" + "**/\n";
- }
-
private static String getHeader() {
try {
return Files.readFile(new File(HEADER_FILE));
Added: trunk/src/dl-learner/org/dllearner/scripts/NewSample.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/scripts/NewSample.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/scripts/NewSample.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -0,0 +1,160 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.**/
+package org.dllearner.scripts;
+
+import java.io.File;
+import java.io.IOException;
+import java.text.DecimalFormat;
+import java.util.List;
+import java.util.SortedSet;
+import java.util.TreeSet;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.FileAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.EvaluatedDescription;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.LearningProblemUnsupportedException;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.configuration.Configurator;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.reasoning.FastInstanceChecker;
+import org.dllearner.utilities.Files;
+
+import com.jamonapi.MonitorFactory;
+
+/**
+ * Sample script showing how to use DL-Learner. Provides an entry point for tool
+ * developers.
+ *
+ * @author Sebastian Hellmann
+ * @author Jens Lehmann
+ *
+ */
+public class NewSample {
+
+ private static Logger logger = Logger.getRootLogger();
+ private static DecimalFormat df = new DecimalFormat();
+
+ public static void main(String[] args) throws IOException, ComponentInitException,
+ LearningProblemUnsupportedException {
+
+ // create logger (configure this to your needs)
+ SimpleLayout layout = new SimpleLayout();
+ FileAppender fileAppender = new FileAppender(layout, "log/sample_log.txt", false);
+
+ ConsoleAppender consoleAppender = new ConsoleAppender(layout);
+ logger.removeAllAppenders();
+ logger.addAppender(consoleAppender);
+ logger.addAppender(fileAppender);
+ logger.setLevel(Level.DEBUG);
+
+ // OWL file containing background knowledge
+ String owlFile = "examples/trains/trains.owl";
+
+ // examples
+ SortedSet<String> posExamples = new TreeSet<String>();
+ posExamples.add("http://example.com/foo#east1");
+ posExamples.add("http://example.com/foo#east2");
+ posExamples.add("http://example.com/foo#east3");
+ posExamples.add("http://example.com/foo#east4");
+ posExamples.add("http://example.com/foo#east5");
+
+ SortedSet<String> negExamples = new TreeSet<String>();
+ negExamples.add("http://example.com/foo#west6");
+ negExamples.add("http://example.com/foo#west7");
+ negExamples.add("http://example.com/foo#west8");
+ negExamples.add("http://example.com/foo#west9");
+ negExamples.add("http://example.com/foo#west10");
+
+ List<EvaluatedDescription> results = learn(owlFile, posExamples, negExamples, 5);
+ int x = 0;
+ for (EvaluatedDescription ed : results) {
+ System.out.println("solution: " + x);
+ System.out.println(" description: \t"
+ + ed.getDescription().toManchesterSyntaxString(null, null));
+ System.out.println(" accuracy: \t" + df.format(ed.getAccuracy() * 100) + "%");
+ System.out.println();
+ x++;
+ }
+
+ Files.createFile(new File("log/jamon_sample.html"), MonitorFactory.getReport());
+ }
+
+ public static List<EvaluatedDescription> learn(String owlFile, SortedSet<String> posExamples,
+ SortedSet<String> negExamples, int maxNrOfResults) throws ComponentInitException,
+ LearningProblemUnsupportedException {
+
+ logger.info("Start Learning with");
+ logger.info("positive examples: \t" + posExamples.size());
+ logger.info("negative examples: \t" + negExamples.size());
+
+ // the component manager is the central object to create
+ // and configure components
+ ComponentManager cm = ComponentManager.getInstance();
+
+ // knowledge source
+ //KnowledgeSource ks = cm.knowledgeSource(OWLFile.class);
+
+ String fileURL = new File(owlFile).toURI().toString();
+ OWLFile ks = Configurator.getOWLFile(cm, fileURL);
+
+
+ // reasoner
+ ReasonerComponent r = cm.reasoner(FastInstanceChecker.class, ks);
+ ReasoningService rs = cm.reasoningService(r);
+
+
+ // learning problem
+ LearningProblem lp = cm.learningProblem(PosNegDefinitionLP.class, rs);
+ cm.applyConfigEntry(lp, "positiveExamples", posExamples);
+ cm.applyConfigEntry(lp, "negativeExamples", negExamples);
+
+ // learning algorithm
+ LearningAlgorithm la = cm.learningAlgorithm(ExampleBasedROLComponent.class, lp, rs);
+ cm.applyConfigEntry(la, "useAllConstructor", false);
+ cm.applyConfigEntry(la, "useExistsConstructor", true);
+ cm.applyConfigEntry(la, "useCardinalityRestrictions", false);
+ cm.applyConfigEntry(la, "useNegation", false);
+ cm.applyConfigEntry(la, "writeSearchTree", false);
+ cm.applyConfigEntry(la, "searchTreeFile", "log/searchTree.txt");
+ cm.applyConfigEntry(la, "replaceSearchTree", true);
+ cm.applyConfigEntry(la, "noisePercentage", 0.0);
+
+ // all components need to be initialised before they can be used
+ ks.init();
+ r.init();
+ lp.init();
+ la.init();
+
+ // start learning algorithm
+ logger.debug("start learning");
+ la.start();
+
+ return la.getCurrentlyBestEvaluatedDescriptions(maxNrOfResults);
+ }
+
+}
Modified: trunk/src/dl-learner/org/dllearner/scripts/Sample.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/scripts/Sample.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/scripts/Sample.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -33,13 +33,11 @@
import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.EvaluatedDescription;
-import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
import org.dllearner.core.LearningProblemUnsupportedException;
import org.dllearner.core.ReasonerComponent;
import org.dllearner.core.ReasoningService;
-import org.dllearner.core.configuration.Configurator;
import org.dllearner.kb.OWLFile;
import org.dllearner.learningproblems.PosNegDefinitionLP;
import org.dllearner.reasoning.FastInstanceChecker;
@@ -121,9 +119,10 @@
//KnowledgeSource ks = cm.knowledgeSource(OWLFile.class);
String fileURL = new File(owlFile).toURI().toString();
- OWLFile ks = Configurator.getOWLFile(cm, fileURL);
- //cm.applyConfigEntry(ks, "url", fileURL);
-
+ OWLFile ks = cm.knowledgeSource(OWLFile.class);
+ cm.applyConfigEntry(ks, "url", fileURL);
+
+
// reasoner
ReasonerComponent r = cm.reasoner(FastInstanceChecker.class, ks);
ReasoningService rs = cm.reasoningService(r);
Modified: trunk/src/dl-learner/org/dllearner/utilities/Files.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/utilities/Files.java 2008-09-03 19:29:41 UTC (rev 1169)
+++ trunk/src/dl-learner/org/dllearner/utilities/Files.java 2008-09-05 12:24:05 UTC (rev 1170)
@@ -156,5 +156,30 @@
Files.deleteFile(new File(dir+File.separator+files[i]));
}
}
+
+ public static void backupDirect...
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