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[DL-Learner SVN] SF.net SVN: dl-learner: [728] trunk/src/dl-learner/org/dllearner/tools/ore
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From: <lor...@us...> - 2008-03-26 20:11:58
|
Revision: 728
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=728&view=rev
Author: lorenz_b
Date: 2008-03-26 13:11:12 -0700 (Wed, 26 Mar 2008)
Log Message:
-----------
Wizard for ORE
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java
trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java
trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java
trunk/src/dl-learner/org/dllearner/tools/ore/Main.java
trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java
trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java
trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java
trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java
trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelDescriptor.java
trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java
trunk/src/dl-learner/org/dllearner/tools/ore/father.owl
Removed Paths:
-------------
trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
Added: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,101 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.event.ListSelectionListener;
+
+public class ConceptPanel extends JPanel{
+
+
+
+ private javax.swing.JList conceptList;
+
+ private JPanel contentPanel;
+
+ private DefaultListModel model;
+ private BlinkLabel blink;
+
+ public ConceptPanel() {
+
+ super();
+ model = new DefaultListModel();
+ blink = new BlinkLabel();
+ blink.setText("Loading Concepts");
+ contentPanel = getContentPanel();
+ setLayout(new java.awt.BorderLayout());
+ add(contentPanel,BorderLayout.CENTER);
+ add(blink, BorderLayout.SOUTH);
+ }
+
+ private JPanel getContentPanel() {
+
+ JPanel contentPanel1 = new JPanel();
+ JScrollPane scroll = new JScrollPane();
+
+
+ conceptList = new JList(model);
+ scroll.setSize(100,100);
+ scroll.setViewportView(conceptList);
+
+ contentPanel1.add(scroll);
+
+
+
+ return contentPanel1;
+ }
+
+ public DefaultListModel getModel(){
+ return model;
+ }
+
+ public void setModel(DefaultListModel dm){
+ conceptList.setModel(dm);
+ }
+
+ public void addSelectionListener(ListSelectionListener l){
+ conceptList.addListSelectionListener(l);
+ }
+
+ public JList getList(){
+ return conceptList;
+ }
+
+ public BlinkLabel getBlinkLabel(){
+ return blink;
+ }
+
+ class BlinkLabel extends JLabel implements Runnable{
+ private boolean blinking = false;
+
+ public void start(){
+ blinking = true;
+ new Thread(this).start();
+ }
+ public void stop(){
+ blinking = false;
+ setText("Done! Select Concept and press 'Next'");
+ }
+ public void run(){
+ while(blinking){
+ setForeground(Color.red);
+ try {
+ Thread.sleep(100);
+ } catch (InterruptedException e) {
+ return;
+ }
+ setForeground(Color.black);
+ }
+ }
+ }
+
+
+
+
+
+}
\ No newline at end of file
Added: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,60 @@
+package org.dllearner.tools.ore;
+
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+
+
+
+
+public class ConceptPanelDescriptor extends WizardPanelDescriptor implements ListSelectionListener{
+
+ public static final String IDENTIFIER = "CONCEPT_CHOOSE_PANEL";
+
+ ConceptPanel panel3;
+
+ public ConceptPanelDescriptor() {
+
+ panel3 = new ConceptPanel();
+ panel3.addSelectionListener(this);
+
+ setPanelDescriptorIdentifier(IDENTIFIER);
+ setPanelComponent(panel3);
+
+ }
+
+ public Object getNextPanelDescriptor() {
+ return LearningPanelDescriptor.IDENTIFIER;
+ }
+
+ public Object getBackPanelDescriptor() {
+ return KnowledgeSourcePanelDescriptor.IDENTIFIER;
+ }
+
+ public void aboutToDisplayPanel() {
+ setNextButtonAccordingToConceptSelected();
+ }
+
+
+ @Override
+ public void valueChanged(ListSelectionEvent e) {
+ setNextButtonAccordingToConceptSelected();
+ if (!e.getValueIsAdjusting())
+ getWizardModel().getOre().setConcept(panel3.getList().getSelectedValue().toString());
+
+ }
+
+ private void setNextButtonAccordingToConceptSelected() {
+
+ if (panel3.getList().getSelectedValue()!= null){
+ getWizard().setNextFinishButtonEnabled(true);
+ }else{
+ getWizard().setNextFinishButtonEnabled(false);
+ }
+
+ }
+
+
+
+
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,109 @@
+package org.dllearner.tools.ore;
+
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Font;
+
+import javax.swing.BorderFactory;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextArea;
+import javax.swing.UIManager;
+
+
+public class IntroductionPanel extends JPanel {
+
+ private JTextArea instructionsField;
+ private JScrollPane jScrollPane1;
+
+
+
+ private JLabel welcomeTitle;
+ private JPanel contentPanel;
+
+
+
+ public IntroductionPanel() {
+
+
+
+
+
+ contentPanel = getContentPanel();
+
+
+
+
+ setLayout(new java.awt.BorderLayout());
+
+
+
+ //add(leftPanel, BorderLayout.WEST);
+
+ JPanel secondaryPanel = new JPanel();
+ secondaryPanel.add(contentPanel, BorderLayout.NORTH);
+ add(contentPanel, BorderLayout.CENTER);
+ }
+
+
+ private JPanel getContentPanel() {
+
+ JPanel contentPanel1 = new JPanel();
+ JPanel jPanel1 = new JPanel();
+
+ jScrollPane1 = new JScrollPane();
+ instructionsField = new JTextArea();
+
+
+ //setLayout(new GridBagLayout());
+ setBorder(BorderFactory.createEmptyBorder(12, 6, 12, 12));
+ jScrollPane1.setBorder(BorderFactory.createEmptyBorder(0, 0, 0, 0));
+ jScrollPane1.setViewportBorder(BorderFactory.createEmptyBorder(0, 0, 0, 0));
+ instructionsField.setBackground(UIManager.getDefaults().getColor("control"));
+ instructionsField.setColumns(20);
+ instructionsField.setEditable(false);
+ instructionsField.setLineWrap(true);
+ instructionsField.setRows(5);
+ instructionsField.setFont(new Font("Serif",Font.PLAIN,14));
+ instructionsField.setText("This is an test of a wizard dialog, which allows a knowledge engineer to select " +
+ "a concept of an ontology which should be (re)learned. \n\nOn " +
+ "the next page, choose a JAR file that contains some components. It will find any " +
+ "JavaBeans listed in the manifest, and also let you add classes from the JAR file. " +
+ "When the resulting NetBeans plug-in is installed in NetBeans, the components you " +
+ "selected will be on the Component Palette, and can be dragged and dropped onto Swing " +
+ "forms. The library display name you enter is also the name that will be used for the " +
+ "category in the component palette where your components will appear.");
+ instructionsField.setWrapStyleWord(true);
+ jScrollPane1.setViewportView(instructionsField);
+
+
+
+
+
+ welcomeTitle = new JLabel();
+ welcomeTitle.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, new Color(0, 0, 0)));
+
+
+
+ contentPanel1.setLayout(new java.awt.BorderLayout());
+
+ welcomeTitle.setFont(new java.awt.Font("MS Sans Serif", Font.BOLD, 14));
+ welcomeTitle.setText("Welcome to the DL-Learner ORE-Tool!");
+ contentPanel1.add(welcomeTitle, java.awt.BorderLayout.NORTH);
+
+ jPanel1.setLayout(new java.awt.GridLayout(0, 1,0,0));
+
+ //jPanel1.add(blankSpace);
+
+
+ jPanel1.add(jScrollPane1);
+
+ contentPanel1.add(jPanel1, java.awt.BorderLayout.CENTER);
+
+ return contentPanel1;
+
+ }
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,23 @@
+package org.dllearner.tools.ore;
+
+
+
+public class IntroductionPanelDescriptor extends WizardPanelDescriptor {
+
+ public static final String IDENTIFIER = "INTRODUCTION_PANEL";
+
+ public IntroductionPanelDescriptor() {
+ super(IDENTIFIER, new IntroductionPanel());
+ }
+
+ public Object getNextPanelDescriptor() {
+ return KnowledgeSourcePanelDescriptor.IDENTIFIER;
+ }
+
+ public Object getBackPanelDescriptor() {
+ return null;
+ }
+
+
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,127 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.event.ActionListener;
+import java.io.File;
+
+import javax.swing.JFileChooser;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.event.DocumentListener;
+import javax.swing.filechooser.FileFilter;
+
+public class KnowledgeSourcePanel extends JPanel{
+
+
+ private javax.swing.JTextField fileURL;
+ private javax.swing.JButton browseButton;
+
+ private JPanel contentPanel;
+ private LeftPanel leftPanel;
+ private JLabel message;
+
+ public KnowledgeSourcePanel() {
+
+// super();
+ leftPanel = new LeftPanel(1);
+ contentPanel = getContentPanel();
+
+ setLayout(new java.awt.BorderLayout());
+
+ //add(leftPanel,BorderLayout.WEST);
+ add(contentPanel,BorderLayout.CENTER);
+
+ }
+
+ private JPanel getContentPanel() {
+
+ JPanel contentPanel1 = new JPanel();
+
+ message = new JLabel();
+ message.setText("enter or browse OWL file");
+ fileURL = new javax.swing.JTextField(40);
+
+ browseButton = new javax.swing.JButton("browse");
+
+ contentPanel1.setLayout(new BorderLayout());
+
+ JPanel panel = new JPanel();
+ panel.add(fileURL);
+ panel.add(browseButton);
+
+ contentPanel1.add(panel,BorderLayout.CENTER);
+ contentPanel1.add(message,BorderLayout.SOUTH);
+
+
+
+ return contentPanel1;
+ }
+
+ public void addListeners(ActionListener l, DocumentListener d) {
+ browseButton.addActionListener(l);
+ fileURL.addActionListener(l);
+ fileURL.getDocument().addDocumentListener(d);
+ }
+
+
+
+ public void openFileChooser(){
+ JFileChooser filechooser = new JFileChooser();
+
+ filechooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
+ String choosenPath = fileURL.getText();
+ if(!choosenPath.equals("") && (new File(choosenPath)).exists())
+ filechooser.setCurrentDirectory(new File(fileURL.getText()));
+
+ filechooser.addChoosableFileFilter(new FileFilter() {
+ public boolean accept(File f) {
+ if (f.isDirectory()) return true;
+ return f.getName().toLowerCase().endsWith(".owl");
+ }
+ public String getDescription () { return "OWLs"; }
+ });
+ int status = filechooser.showOpenDialog( null );
+
+ if ( status == JFileChooser.APPROVE_OPTION ){
+ String strURL = filechooser.getSelectedFile().getAbsolutePath();
+ fileURL.setText(strURL);
+
+
+
+ }else{
+ System.out.println( "Auswahl abgebrochen" );
+ }
+ }
+
+ public boolean isExistingOWLFile(){
+ if(!fileURL.getText().equals("") && !getOWLFile().exists()){
+
+ message.setText(fileURL.getText()+" does not exist");
+ return false;
+ }
+ if(!fileURL.getText().equals("") && (getOWLFile().isDirectory() || (getOWLFile().isFile() && !getOWLFile().getPath().endsWith(".owl")))){
+ System.err.println(getOWLFile().getPath());
+ message.setText(fileURL.getText()+" is not a OWL file");
+ return false;
+ }
+ if(fileURL.getText().equals("")){
+ message.setText("enter or browse OWL file");
+ return false;
+ }
+ if(getOWLFile().exists() && getOWLFile().getPath().endsWith(".owl")){
+ message.setText("");
+ return true;
+ }
+ return true;
+
+
+
+ }
+
+ public File getOWLFile() {
+ return new File(fileURL.getText());
+ }
+
+
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,119 @@
+package org.dllearner.tools.ore;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.Set;
+
+import javax.swing.SwingWorker;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
+
+import org.dllearner.core.owl.NamedClass;
+
+
+public class KnowledgeSourcePanelDescriptor extends WizardPanelDescriptor implements ActionListener, DocumentListener{
+
+ public static final String IDENTIFIER = "KNOWLEDGESOURCE_CHOOSE_PANEL";
+
+ KnowledgeSourcePanel panel2;
+
+ public KnowledgeSourcePanelDescriptor() {
+
+ panel2 = new KnowledgeSourcePanel();
+
+ panel2.addListeners(this, this);
+
+ setPanelDescriptorIdentifier(IDENTIFIER);
+ setPanelComponent(panel2);
+
+ }
+
+ public Object getNextPanelDescriptor() {
+ return ConceptPanelDescriptor.IDENTIFIER;
+ }
+
+ public Object getBackPanelDescriptor() {
+ return IntroductionPanelDescriptor.IDENTIFIER;
+ }
+
+
+ public void aboutToDisplayPanel() {
+ setNextButtonAccordingToExistingOWLFile();
+ }
+
+ public void actionPerformed(ActionEvent e) {
+ String cmd = e.getActionCommand();
+ if(cmd.equals("browse")){
+ panel2.openFileChooser();
+ }
+
+ setNextButtonAccordingToExistingOWLFile();
+ }
+
+
+
+
+ private void setNextButtonAccordingToExistingOWLFile() {
+
+ if (panel2.isExistingOWLFile()){
+ getWizardModel().getOre().setKnowledgeSource(panel2.getOWLFile());
+ getWizard().setNextFinishButtonEnabled(true);
+// new ConceptRetriever().execute();
+// System.err.println("test");
+ }
+
+
+
+
+
+ else
+ getWizard().setNextFinishButtonEnabled(false);
+
+ }
+
+
+ @Override
+ public void changedUpdate(DocumentEvent e) {
+ setNextButtonAccordingToExistingOWLFile();
+
+ }
+
+ @Override
+ public void insertUpdate(DocumentEvent e) {
+ setNextButtonAccordingToExistingOWLFile();
+
+ }
+
+ @Override
+ public void removeUpdate(DocumentEvent e) {
+ setNextButtonAccordingToExistingOWLFile();
+
+ }
+ class ConceptRetriever extends SwingWorker<Set<NamedClass>, NamedClass>
+ {
+ @Override
+ public Set<NamedClass> doInBackground()
+ {
+ getWizardModel().getOre().detectReasoner();
+ Set<NamedClass> ind = getWizardModel().getOre().getReasoningService().getAtomicConcepts();
+ ConceptPanelDescriptor nextPanel = (ConceptPanelDescriptor)getWizardModel().getPanelHashMap().get(getNextPanelDescriptor());
+ nextPanel.panel3.getModel().clear();
+
+ for (NamedClass cl : ind){
+ publish(cl);
+ nextPanel.panel3.getModel().addElement(cl);
+ System.out.println(cl.toString());
+ }
+ return ind;
+ }
+
+
+
+
+ }
+
+
+
+
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,73 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.event.ActionListener;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JButton;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+
+public class LearningPanel extends JPanel{
+
+
+
+ private javax.swing.JList conceptList;
+
+ private JPanel contentPanel;
+
+ private DefaultListModel model;
+ private JLabel result;
+ private JButton run;
+
+ public LearningPanel() {
+
+ super();
+ model = new DefaultListModel();
+ result = new JLabel();
+ run = new JButton("Run");
+ contentPanel = getContentPanel();
+ setLayout(new java.awt.BorderLayout());
+ add(run,BorderLayout.EAST);
+ add(contentPanel,BorderLayout.CENTER);
+ add(result, BorderLayout.SOUTH);
+ }
+
+ private JPanel getContentPanel() {
+
+ JPanel contentPanel1 = new JPanel();
+ JScrollPane scroll = new JScrollPane();
+
+
+ conceptList = new JList(model);
+ scroll.setSize(100,100);
+ scroll.setViewportView(conceptList);
+
+ contentPanel1.add(scroll);
+
+
+
+ return contentPanel1;
+ }
+
+ public void addButtonListener(ActionListener a){
+ run.addActionListener(a);
+ }
+
+ public void setResult(String resultStr){
+ result.setText(resultStr);
+ }
+
+
+
+
+
+}
+
+
+
+
+
+
Added: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,82 @@
+package org.dllearner.tools.ore;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.concurrent.ExecutionException;
+
+import javax.swing.SwingWorker;
+
+import org.dllearner.core.owl.Description;
+
+
+
+
+public class LearningPanelDescriptor extends WizardPanelDescriptor implements ActionListener{
+
+ public static final String IDENTIFIER = "LEARNING_PANEL";
+
+ LearningPanel panel4;
+
+ public LearningPanelDescriptor() {
+
+ panel4 = new LearningPanel();
+ panel4.addButtonListener(this);
+
+ setPanelDescriptorIdentifier(IDENTIFIER);
+ setPanelComponent(panel4);
+
+ }
+
+ public Object getNextPanelDescriptor() {
+ return LearningPanelDescriptor.IDENTIFIER;
+ }
+
+ public Object getBackPanelDescriptor() {
+ return ConceptPanelDescriptor.IDENTIFIER;
+ }
+
+
+ public void displayingPanel(){
+
+ }
+
+ class Result extends SwingWorker<Description, Void>
+ {
+ @Override
+ public Description doInBackground()
+ {
+ getWizardModel().getOre().start();
+ Description result = getWizardModel().getOre().getLearningResult();
+
+
+ return result;
+ }
+
+ public void done(){
+ Description result=null;
+ try {
+ result = get();
+ } catch (InterruptedException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ } catch (ExecutionException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ panel4.setResult(result.toString());
+ }
+
+
+
+ }
+
+
+
+
+
+
+ @Override
+ public void actionPerformed(ActionEvent arg0) {
+ new Result().execute();
+
+ }}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,59 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GridLayout;
+
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+
+public class LeftPanel extends JPanel{
+
+ private JLabel[] jLabel;
+
+ public LeftPanel(int i){
+
+ jLabel = new JLabel[5];
+ setBackground(new java.awt.Color(255, 255, 255));
+ JPanel panel2 = new JPanel();
+ panel2.setBackground(new java.awt.Color(255, 255, 255));
+ panel2.setLayout(new GridLayout(5,1,0,10));
+ jLabel[0] = new JLabel("1. Introduction");
+ jLabel[1] = new JLabel("2. Knowledge Source");
+ jLabel[2] = new JLabel("3. Concept");
+ jLabel[3] = new JLabel("4. Examples");
+ jLabel[4] = new JLabel("5. Learning");
+
+ jLabel[i].setFont(jLabel[i].getFont().deriveFont(Font.BOLD));
+
+ for(JLabel current : jLabel)
+ panel2.add(current);
+ setLayout(new BorderLayout());
+ setPreferredSize(new Dimension(140,500));
+ add(panel2, BorderLayout.NORTH);
+
+ }
+
+ public void set(int i){
+ removeAll();
+
+ setBackground(new java.awt.Color(255, 255, 255));
+ JPanel panel2 = new JPanel();
+ panel2.setBackground(new java.awt.Color(255, 255, 255));
+ panel2.setLayout(new GridLayout(5,1,0,10));
+ jLabel[0] = new JLabel("1. Introduction");
+ jLabel[1] = new JLabel("2. Knowledge Source");
+ jLabel[2] = new JLabel("3. Concept");
+ jLabel[3] = new JLabel("4. Examples");
+ jLabel[4] = new JLabel("5. Learning");
+
+ jLabel[i].setFont(jLabel[i].getFont().deriveFont(Font.BOLD));
+
+ for(JLabel current : jLabel)
+ panel2.add(current);
+ setLayout(new BorderLayout());
+ add(panel2, BorderLayout.NORTH);
+ }
+
+}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/Main.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/Main.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/Main.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,54 @@
+package org.dllearner.tools.ore;
+
+import javax.swing.UIManager;
+import javax.swing.UnsupportedLookAndFeelException;
+
+
+
+public class Main {
+
+ public static void main(String[] args) {
+ try {
+ UIManager.setLookAndFeel(
+ UIManager.getSystemLookAndFeelClassName());
+ } catch (ClassNotFoundException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ } catch (InstantiationException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ } catch (IllegalAccessException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ } catch (UnsupportedLookAndFeelException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ Wizard wizard = new Wizard();
+ wizard.getDialog().setTitle("DL-Learner ORE-Tool");
+ wizard.getDialog().setSize(700, 400);
+
+ WizardPanelDescriptor descriptor1 = new IntroductionPanelDescriptor();
+ wizard.registerWizardPanel(IntroductionPanelDescriptor.IDENTIFIER, descriptor1);
+
+ WizardPanelDescriptor descriptor2 = new KnowledgeSourcePanelDescriptor();
+ wizard.registerWizardPanel(KnowledgeSourcePanelDescriptor.IDENTIFIER, descriptor2);
+
+ WizardPanelDescriptor descriptor3 = new ConceptPanelDescriptor();
+ wizard.registerWizardPanel(ConceptPanelDescriptor.IDENTIFIER, descriptor3);
+
+ WizardPanelDescriptor descriptor4 = new LearningPanelDescriptor();
+ wizard.registerWizardPanel(LearningPanelDescriptor.IDENTIFIER, descriptor4);
+
+ wizard.setCurrentPanel(IntroductionPanelDescriptor.IDENTIFIER);
+
+ int ret = wizard.showModalDialog();
+
+ System.out.println("Dialog return code is (0=Finish,1=Cancel,2=Error): " + ret);
+
+
+ System.exit(0);
+
+ }
+
+}
Deleted: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-26 15:49:00 UTC (rev 727)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -1,610 +0,0 @@
-/**
- * Copyright (C) 2007-2008, Jens Lehmann
- *
- * This file is part of DL-Learner.
- *
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.tools.ore;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStreamReader;
-import java.net.MalformedURLException;
-import java.net.URL;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.SortedSet;
-import java.util.TreeSet;
-
-import org.apache.log4j.ConsoleAppender;
-import org.apache.log4j.Level;
-import org.apache.log4j.Logger;
-import org.apache.log4j.SimpleLayout;
-import org.dllearner.algorithms.BruteForceLearner;
-import org.dllearner.algorithms.RandomGuesser;
-import org.dllearner.algorithms.gp.GP;
-import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
-import org.dllearner.algorithms.refinement.ROLearner;
-import org.dllearner.cli.ConfFileOption;
-import org.dllearner.core.Component;
-import org.dllearner.core.ComponentInitException;
-import org.dllearner.core.ComponentManager;
-import org.dllearner.core.KnowledgeSource;
-import org.dllearner.core.LearningAlgorithm;
-import org.dllearner.core.ReasonerComponent;
-import org.dllearner.core.ReasoningService;
-import org.dllearner.core.config.BooleanConfigOption;
-import org.dllearner.core.config.ConfigEntry;
-import org.dllearner.core.config.ConfigOption;
-import org.dllearner.core.config.DoubleConfigOption;
-import org.dllearner.core.config.IntegerConfigOption;
-import org.dllearner.core.config.InvalidConfigOptionValueException;
-import org.dllearner.core.config.StringConfigOption;
-import org.dllearner.core.config.StringSetConfigOption;
-import org.dllearner.core.config.StringTupleListConfigOption;
-import org.dllearner.core.owl.Description;
-import org.dllearner.core.owl.Individual;
-import org.dllearner.core.owl.NamedClass;
-import org.dllearner.kb.KBFile;
-import org.dllearner.kb.OWLFile;
-import org.dllearner.kb.sparql.SparqlKnowledgeSource;
-import org.dllearner.learningproblems.PosNegDefinitionLP;
-import org.dllearner.parser.ConfParser;
-import org.dllearner.parser.KBParser;
-import org.dllearner.parser.ParseException;
-import org.dllearner.parser.TokenMgrError;
-import org.dllearner.reasoning.DIGReasoner;
-import org.dllearner.reasoning.FastInstanceChecker;
-import org.dllearner.reasoning.FastRetrievalReasoner;
-import org.dllearner.reasoning.OWLAPIReasoner;
-import org.dllearner.utilities.ConceptComparator;
-import org.dllearner.utilities.Datastructures;
-import org.dllearner.utilities.Helper;
-import org.dllearner.utilities.StringTuple;
-
-/**
- * Start class for the ontology repair and enrichment tool.
- *
- * @author Lorenz Buehmann.
- *
- */
-public class ORE {
-
- private static Logger logger = Logger.getRootLogger();
-
- private static LearningAlgorithm la;
- private ReasoningService rs;
-
- /**
- * Entry point for CLI interface.
- *
- * @param args
- */
- public static void main(String[] args) throws ComponentInitException {
-
- File file = new File(args[args.length - 1]);
-
- // create logger (a simple logger which outputs
- // its messages to the console)
- SimpleLayout layout = new SimpleLayout();
- ConsoleAppender consoleAppender = new ConsoleAppender(layout);
- logger.removeAllAppenders();
- logger.addAppender(consoleAppender);
- logger.setLevel(Level.DEBUG);
-
- ORE ore = null;
- ore = new ORE(file);
- ore.start();
- }
-
- /**
- * Initialise all components based on conf file.
- *
- * @param file
- * Conf file to read.
- * @throws ComponentInitException
- */
- public ORE(File file) throws ComponentInitException {
- String baseDir = file.getParentFile().getPath();
-
- // create component manager instance
- String message = "starting component manager ... ";
- long cmStartTime = System.nanoTime();
- ComponentManager cm = ComponentManager.getInstance();
- long cmTime = System.nanoTime() - cmStartTime;
- message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
- logger.info(message);
-
- // create a mapping between components and prefixes in the conf file
- Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
-
- // parse conf file
- ConfParser parser = ConfParser.parseFile(file);
-
- // step 1: detect knowledge sources
- Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
- Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
- parser, baseDir);
- for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
- .entrySet()) {
- KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
- // apply URL entry (this assumes that every knowledge source has a
- // configuration option "url"), so this may need to be changed in
- // the
- // future
- cm.applyConfigEntry(ks, "url", entry.getKey().toString());
-
- sources.add(ks);
- configureComponent(cm, ks, componentPrefixMapping, parser);
- initComponent(cm, ks);
- }
-
- // step 2: detect used reasoner
- ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
- ReasonerComponent reasoner = cm.reasoner(
- getReasonerClass(reasonerOption), sources);
- configureComponent(cm, reasoner, componentPrefixMapping, parser);
- initComponent(cm, reasoner);
- rs = cm.reasoningService(reasoner);
-
- }
-
- public void start() {
- processOREMode(rs);
-
- }
-
- /**
- * creates a mapping from components to option prefix strings
- */
- public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
- Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
- // knowledge sources
- componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
- // reasoners
- componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
- componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
- // learning problems - configured via + and - flags for examples
- componentPrefixMapping.put(PosNegDefinitionLP.class,
- "posNegDefinitionLP");
- // learning algorithms
- componentPrefixMapping.put(ROLearner.class, "refinement");
- componentPrefixMapping.put(ExampleBasedROLComponent.class,
- "refexamples");
- componentPrefixMapping.put(GP.class, "gp");
- return componentPrefixMapping;
- }
-
- /**
- * convenience method basically every prefix (e.g. "refinement" in
- * "refinement.horizontalExpFactor) corresponds to a specific component -
- * this way the CLI will automatically support any configuration options
- * supported by the component
- */
- public static void configureComponent(ComponentManager cm,
- Component component,
- Map<Class<? extends Component>, String> componentPrefixMapping,
- ConfParser parser) {
- String prefix = componentPrefixMapping.get(component.getClass());
- if (prefix != null)
- configureComponent(cm, component, parser
- .getConfOptionsByPrefix(prefix));
- }
-
- // convenience method - see above method
- private static void configureComponent(ComponentManager cm,
- Component component, List<ConfFileOption> options) {
- if (options != null)
- for (ConfFileOption option : options)
- applyConfFileOption(cm, component, option);
- }
-
- // applies an option to a component - checks whether the option and its
- // value is valid
- private static void applyConfFileOption(ComponentManager cm,
- Component component, ConfFileOption option) {
- // the name of the option is suboption-part (the first part refers
- // to its component)
- String optionName = option.getSubOption();
-
- ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
- optionName);
- // check whether such an option exists
- if (configOption != null) {
-
- // catch all invalid config options
- try {
-
- // perform compatibility checks
- if (configOption instanceof StringConfigOption
- && option.isStringOption()) {
-
- ConfigEntry<String> entry = new ConfigEntry<String>(
- (StringConfigOption) configOption, option
- .getStringValue());
- cm.applyConfigEntry(component, entry);
-
- } else if (configOption instanceof IntegerConfigOption
- && option.isIntegerOption()) {
-
- ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
- (IntegerConfigOption) configOption, option
- .getIntValue());
- cm.applyConfigEntry(component, entry);
-
- } else if (configOption instanceof DoubleConfigOption
- && (option.isIntegerOption() || option.isDoubleOption())) {
-
- double value;
- if (option.isIntegerOption())
- value = option.getIntValue();
- else
- value = option.getDoubleValue();
-
- ConfigEntry<Double> entry = new ConfigEntry<Double>(
- (DoubleConfigOption) configOption, value);
- cm.applyConfigEntry(component, entry);
-
- } else if (configOption instanceof BooleanConfigOption
- && option.isStringOption()) {
-
- ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
- (BooleanConfigOption) configOption, Datastructures
- .strToBool(option.getStringValue()));
- cm.applyConfigEntry(component, entry);
-
- } else if (configOption instanceof StringSetConfigOption
- && option.isSetOption()) {
-
- ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
- (StringSetConfigOption) configOption, option
- .getSetValues());
- cm.applyConfigEntry(component, entry);
-
- } else if (configOption instanceof StringTupleListConfigOption
- && option.isListOption()) {
-
- ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
- (StringTupleListConfigOption) configOption, option
- .getListTuples());
- cm.applyConfigEntry(component, entry);
-
- } else {
- handleError("The type of conf file entry \""
- + option.getFullName()
- + "\" is not correct: value \"" + option.getValue()
- + "\" not valid for option type \""
- + configOption.getClass().getName() + "\".");
- }
-
- } catch (InvalidConfigOptionValueException e) {
- e.printStackTrace();
- System.exit(0);
- }
-
- } else
- handleError("Unknow option " + option + ".");
- }
-
- /**
- * detects all imported files and their format
- */
- public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
- ConfParser parser, String baseDir) {
- List<List<String>> imports = parser.getFunctionCalls().get("import");
- Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
-
- if (imports != null) {
- for (List<String> arguments : imports) {
- // step 1: detect URL
- URL url = null;
- try {
- String fileString = arguments.get(0);
- if (fileString.startsWith("http:")) {
- url = new URL(fileString);
- } else {
- File f = new File(baseDir, arguments.get(0));
- url = f.toURI().toURL();
- }
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- // step 2: detect format
- Class<? extends KnowledgeSource> ksClass;
- if (arguments.size() == 1) {
- String filename = url.getPath();
- String ending = filename.substring(filename
- .lastIndexOf(".") + 1);
-
- if (ending.equals("rdf") || ending.equals("owl"))
- ksClass = OWLFile.class;
- else if (ending.equals("nt"))
- ksClass = OWLFile.class;
- else if (ending.equals("kb"))
- ksClass = KBFile.class;
- else {
- System.err.println("Warning: no format given for "
- + arguments.get(0)
- + " and could not detect it. Chosing RDF/XML.");
- ksClass = OWLFile.class;
- }
-
- importedFiles.put(url, ksClass);
- } else {
- String formatString = arguments.get(1);
-
- if (formatString.equals("RDF/XML"))
- ksClass = OWLFile.class;
- else if (formatString.equals("KB"))
- ksClass = KBFile.class;
- else if (formatString.equals("SPARQL"))
- ksClass = SparqlKnowledgeSource.class;
- else if (formatString.equals("NT"))
- ksClass = OWLFile.class;
- else {
- throw new RuntimeException(
- "Unsupported knowledge source format "
- + formatString + ". Exiting.");
- }
-
- importedFiles.put(url, ksClass);
- }
- }
- }
-
- return importedFiles;
- }
-
- private static void initComponent(ComponentManager cm, Component component)
- throws ComponentInitException {
- String startMessage = "initialising component \""
- + cm.getComponentName(component.getClass()) + "\" ... ";
- long initStartTime = System.nanoTime();
- component.init();
- // standard messsage is just "OK" but can be more detailed for certain
- // components
- String message = "OK";
- if (component instanceof KBFile)
- message = ((KBFile) component).getURL().toString() + " read";
- else if (component instanceof DIGReasoner) {
- DIGReasoner reasoner = (DIGReasoner) component;
- message = "using " + reasoner.getIdentifier()
- + " connected via DIG 1.1 at "
- + reasoner.getReasonerURL().toString();
- }
-
- long initTime = System.nanoTime() - initStartTime;
- logger.info(startMessage + message + " ("
- + Helper.prettyPrintNanoSeconds(initTime, false, false) + ")");
- }
-
- private static void processOREMode(ReasoningService rs) {
- System.err.println("Concepts :" + rs.getAtomicConcepts());
-
- System.out.println("Individuals " + rs.getIndividuals());
- System.out
- .println("Entering ORE mode. Enter a existing concept for learning(new) or q to quit");
-
- String conceptStr = "";
- do {
- //Step 1: choose existing concept which should be (new) learned
- System.out.print("enter concept: ");
- // read input string
- BufferedReader input = new BufferedReader(new InputStreamReader(
- System.in));
-
- try {
- conceptStr = input.readLine();
- } catch (IOException e) {
- e.printStackTrace();
- }
-
- if (!conceptStr.equals("q")) {
-
- // parse concept
- Description concept = null;
- boolean parsedCorrectly = true;
-
- try {
- concept = KBParser.parseConcept(conceptStr);
-
- } catch (ParseException e1) {
- e1.printStackTrace();
- System.err
- .println("The concept you entered could not be parsed. Please try again.");
- parsedCorrectly = false;
- } catch (TokenMgrError e) {
- e.printStackTrace();
- System.err
- .println("An error occured during parsing. Please enter a syntactically valid concept.");
- parsedCorrectly = false;
- }
-
- if (parsedCorrectly) {
-
- // compute atomic concepts used in concept
- SortedSet<NamedClass> occurringConcepts = new TreeSet<NamedClass>(
- new ConceptComparator());
- occurringConcepts.addAll(Helper.getAtomicConcepts(concept));
-
- // substract existing concepts from detected
- // concepts -> the resulting set should be
- // empty, otherwise print a warning (the DIG reasoner
- // will just treat them as concepts about which it
- // has no knowledge - this makes it hard to
- // detect typos
- // (note that removeAll currently gives a different
- // result here, because the comparator of the argument
- // is used)
- for (NamedClass ac : rs.getAtomicConcepts())
- occurringConcepts.remove(ac);
-
- boolean nonExistingConstructs = false;
- if (occurringConcepts.size() != 0) {
- System.out
- .println("You used non-existing atomic concepts or roles. Please correct your query.");
- if (occurringConcepts.size() > 0)
-
- System.out.println("non-existing concepts: "
- + occurringConcepts);
-
- nonExistingConstructs = true;
- }
-
- if (!nonExistingConstructs) {
-
- // Step 2_1: choose all individuals of the concept as positive examples
- SortedSet<Individual> posExamples = null;
- posExamples = rs.retrieval(concept);
- posExamples.removeAll(posExamples);
- posExamples.add(new Individual(
- "http://example.com/father#stefan"));
- posExamples.add(new Individual(
- "http://example.com/father#markus"));
- posExamples.add(new Individual(
- "http://example.com/father#martin"));
-
- //Step 2_2: subtract positive examples from all individuals of the ontology
- //->negative examples of the concepts
- SortedSet<Individual> negExamples = null;
- negExamples = rs.getIndividuals();
- for (Individual rem_pos : posExamples)
- negExamples.remove(rem_pos);
- System.out.println("+" + posExamples);
- System.out.println("-" + negExamples);
-
- //Step 3: Start learning-algorithm
-
- // step 3_1: set learning problem
- ComponentManager cm = ComponentManager.getInstance();
-
- PosNegDefinitionLP lp = new PosNegDefinitionLP(rs,
- posExamples, negExamples);
-
- try {
- initComponent(cm, lp);
- } catch (ComponentInitException e1) {
- // TODO Auto-generated catch block
- e1.printStackTrace();
- }
-
- // step 3_2: set learning algorithm
-
- la = new ROLearner(lp, rs);
-
- try {
- initComponent(cm, la);
- } catch (ComponentInitException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
-
- Thread laThread = new Thread()
- {
- @Override
- public void run(){
- la.start();
- }
- };
- laThread.start();
-
-
- System.out.println(la.getBestSolutions(5));
-
- //Step 4: Knowledge Engineer chooses one of the suggestions
-
- //Step 5: Enrichment
-
- //Step 6: Repair:-check which individuals cause inconsistency
- // -problem solving
-
- }
- }
- }
-
- } while (!conceptStr.equals("q"));
-
- }
-
- /**
- * error handling over the logger
- *
- * @param message
- * is a string and you message for problem
- */
- public static void handleError(String message) {
- logger.error(message);
- System.exit(0);
- }
-
- public ReasoningService getReasoningService() {
- return rs;
- }
-
- // edit by Tilo Hielscher
-
- /**
- * Set Reasoner class. Define here all possible reasoners.
- *
- * @param reasonerOption
- * from config file
- * @return reasonerClass reasoner class
- */
- public static Class<? extends ReasonerComponent> getReasonerClass(
- ConfFileOption reasonerOption) {
- Class<? extends ReasonerComponent> reasonerClass = null;
- if (reasonerOption == null
- || reasonerOption.getStringValue().equals("dig"))
- reasonerClass = DIGReasoner.class;
- else if (reasonerOption.getStringValue().equals("owlAPI"))
- reasonerClass = OWLAPIReasoner.class;
- else if (reasonerOption.getStringValue().equals("fastRetrieval"))
- reasonerClass = FastRetrievalReasoner.class;
- else if (reasonerOption.getStringValue().equals("fastInstanceChecker"))
- reasonerClass = FastInstanceChecker.class;
- else {
- handleError("Unknown value " + reasonerOption.getStringValue()
- + " for option \"reasoner\".");
- }
- return reasonerClass;
- }
-
- public static Class<? extends LearningAlgorithm> getLearningAlgorithm(
- ConfFileOption algorithmOption) {
- Class<? extends LearningAlgorithm> laClass = null;
- if (algorithmOption == null
- || algorithmOption.getStringValue().equals("refinement"))
- laClass = ROLearner.class;
- else if (algorithmOption.getStringValue().equals("refexamples"))
- laClass = ExampleBasedROLComponent.class;
- else if (algorithmOption.getStringValue().equals("gp"))
- laClass = GP.class;
- else if (algorithmOption.getStringValue().equals("bruteForce"))
- laClass = BruteForceLearner.class;
- else if (algorithmOption.getStringValue().equals("randomGuesser"))
- laClass = RandomGuesser.class;
- else
- handleError("Unknown value in " + algorithmOption);
-
- return laClass;
- }
-
-}
Copied: trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java (from rev 721, trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java 2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,619 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.tools.ore;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.SortedSet;
+import java.util.TreeSet;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
+import org.dllearner.algorithms.BruteForceLearner;
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.algorithms.gp.GP;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
+import org.dllearner.algorithms.refinement.ROLearner;
+import org.dllearner.cli.ConfFileOption;
+import org.dllearner.core.Component;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.config.BooleanConfigOption;
+import org.dllearner.core.config.ConfigEntry;
+import org.dllearner.core.config.ConfigOption;
+import org.dllearner.core.config.DoubleConfigOption;
+import org.dllearner.core.config.IntegerConfigOption;
+import org.dllearner.core.config.InvalidConfigOptionValueException;
+import org.dllearner.core.config.StringConfigOption;
+import org.dllearner.core.config.StringSetConfigOption;
+import org.dllearner.core.config.StringTupleListConfigOption;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.Individual;
+import org.dllearner.core.owl.NamedClass;
+import org.dllearner.kb.KBFile;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.kb.sparql.SparqlKnowledgeSource;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.parser.ConfParser;
+import org.dllearner.parser.KBParser;
+import org.dllearner.parser.ParseException;
+import org.dllearner.parser.TokenMgrError;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.reasoning.FastInstanceChecker;
+import org.dllearner.reasoning.FastRetrievalReasoner;
+import org.dllearner.reasoning.OWLAPIReasoner;
+import org.dllearner.utilities.ConceptComparator;
+import org.dllearner.utilities.Datastructures;
+import org.dllearner.utilities.Helper;
+import org.dllearner.utilities.StringTuple;
+
+/**
+ * Start class for the ontology repair and enrichment tool.
+ *
+ * @author Lorenz Buehmann.
+ *
+ */
+public class ORE_alt {
+
+ private static Logger logger = Logger.getRootLogger();
+
+ private static LearningAlgorithm la;
+ private ReasoningService rs;
+ private KnowledgeSource ks;
+
+ /**
+ * Entry point for CLI interface.
+ *
+ * @param args
+ */
+ public static void main(String[] args) throws ComponentInitException {
+
+ File file = new File(args[args.length - 1]);
+
+ // create logger (a simple logger which outputs
+ // its messages to the console)
+ SimpleLayout layout = new SimpleLayout();
+ ConsoleAppender consoleAppender = new ConsoleAppender(layout);
+ logger.removeAllAppenders();
+ logger.addAppender(consoleAppender);
+ logger.setLevel(Level.DEBUG);
+
+ ORE_alt ore = null;
+ ore = new ORE_alt(file);
+ ore.start();
+ }
+
+ public ORE_alt(){
+
+ }
+
+ public void setKnowledgeSource(File file){
+
+ }
+
+ /**
+ * Initialise all components based on conf file.
+ *
+ * @param file
+ * Conf file to read.
+ * @throws ComponentInitException
+ */
+ public ORE_alt(File file) throws ComponentInitException {
+ String baseDir = file.getParentFile().getPath();
+
+ // create component manager instance
+ String message = "starting component manager ... ";
+ long cmStartTime = System.nanoTime();
+ ComponentManager cm = ComponentManager.getInstance();
+ long cmTime = System.nanoTime() - cmStartTime;
+ message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
+ logger.info(message);
+
+ // create a mapping between components and prefixes in the conf file
+ Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
+
+ // parse conf file
+ ConfParser parser = ConfParser.parseFile(file);
+
+ // step 1: detect knowledge sources
+ Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
+ Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
+ parser, baseDir);
+ for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
+ .entrySet()) {
+ KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
+ // apply URL entry (this assumes that every knowledge source has a
+ // configuration option "url"), so this may need to be changed in
+ // the
+ // future
+ cm.applyConfigEntry(ks, "url", entry.getKey().toString());
+
+ sources.add(ks);
+ configureComponent(cm, ks, componentPrefixMapping, parser);
+ initComponent(cm, ks);
+ }
+
+ // step 2: detect used reasoner
+ ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
+ ReasonerComponent reasoner = cm.reasoner(
+ getReasonerClass(reasonerOption), sources);
+ configureComponent(cm, reasoner, componentPrefixMapping, parser);
+ initComponent(cm, reasoner);
+ rs = cm.reasoningService(reasoner);
+
+ }
+
+ public void start() {
+ processOREMode(rs);
+
+ }
+
+ /**
+ * creates a mapping from components to option prefix strings
+ */
+ public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
+ Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
+ // knowledge sources
+ componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
+ // reasoners
+ componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
+ componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
+ // learning problems - configured via + and - flags for examples
+ componentPrefixMapping.put(PosNegDefinitionLP.class,
+ "posNegDefinitionLP");
+ // learning algorithms
+ componentPrefixMapping.put(ROLearner.class, "refinement");
+ componentPrefixMapping.put(ExampleBasedROLComponent.class,
+ "refexamples");
+ componentPrefixMapping.put(GP.class, "gp");
+ return componentPrefixMapping;
+ }
+
+ /**
+ * convenience method basically every prefix (e.g. "refinement" in
+ * "refinement.horizontalExpFactor) corresponds to a specific component -
+ * this way the CLI will automatically support any configuration options
+ * supported by the component
+ */
+ public static void configureComponent(ComponentManager cm,
+ Component component,
+ Map<Class<? extends Component>, String> componentPrefixMapping,
+ ConfParser parser) {
+ String prefix = componentPrefixMapping.get(component.getClass());
+ if (prefix != null)
+ configureComponent(cm, component, parser
+ .getConfOptionsByPrefix(prefix));
+ }
+
+ // convenience method - see above method
+ private static void configureComponent(ComponentManager cm,
+ Component component, List<ConfFileOption> options) {
+ if (options != null)
+ for (ConfFileOption option : options)
+ applyConfFileOption(cm, component, option);
+ }
+
+ // applies an option to a component - checks whether the option and its
+ // value is valid
+ private static void applyConfFileOption(ComponentManager cm,
+ Component component, ConfFileOption option) {
+ // the name of the option is suboption-part (the first part refers
+ // to its component)
+ String optionName = option.getSubOption();
+
+ ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
+ optionName);
+ // check whether such an option exists
+ if (configOption != null) {
+
+ // catch all invalid config options
+ try {
+
+ // perform compatibility checks
+ if (configOption instanceof StringConfigOption
+ && option.isStringOption()) {
+
+ ConfigEntry<String> entry = new ConfigEntry<String>(
+ (StringConfigOption) configOption, option
+ .getStringValue());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof IntegerConfigOption
+ && option.isIntegerOption()) {
+
+ ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
+ (IntegerConfigOption) configOption, option
+ .getIntValue());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof DoubleConfigOption
+ && (option.isIntegerOption() || option.isDoubleOption())) {
+
+ double value;
+ if (option.isIntegerOption())
+ value = option.getIntValue();
+ else
+ value = option.getDoubleValue();
+
+ ConfigEntry<Double> entry = new ConfigEntry<Double>(
+ (DoubleConfigOption) configOption, value);
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof BooleanConfigOption
+ && option.isStringOption()) {
+
+ ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
+ (BooleanConfigOption) configOption, Datastructures
+ .strToBool(option.getStringValue()));
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof StringSetConfigOption
+ && option.isSetOption()) {
+
+ ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
+ (StringSetConfigOption) configOption, option
+ .getSetValues());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof StringTupleListConfigOption
+ && option.isListOption()) {
+
+ ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
+ (StringTupleListConfigOption) configOption, option
+ .getListTuples());
+ cm.applyConfigEntry(component, entry);
+
+ } else {
+ handleError("The type of conf file entry \""
+ + option.getFullName()
+ + "\" is not correct: value \"" + option.getValue()
+ + "\" not valid for option type \""
+ + configOption.getClass().getName() + "\".");
+ }
+
+ } catch (InvalidConfigOptionValueException e) {
+ e.printStackTrace();
+ System.exit(0);
+ }
+
+ } else
+ handleError("Unknow option " + option + ".");
+ }
+
+ /**
+ * detects all imported files and their format
+ */
+ public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
+ ConfParser parser, String baseDir) {
+ List<List<String>> imports = parser.getFunctionCalls().get("import");
+ Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
+
+ if (imports != null) {
+ for (List<String> arguments : imports) {
+ // step 1: detect URL
+ URL url = null;
+ try {
+ String fileString = arguments.get(0);
+ if (fileString.startsWith("http:")) {
+ url = new URL(fileString);
+ } else {
+ File f = new File(baseDir, arguments.get(0));
+ url = f.toURI().toURL();
+ }
+ } catch (MalformedURLException e) {
+ e.printStackTrace();
+ }
+
+ // step 2: detect format
+ Class<? extends KnowledgeSource> ksClass;
+ if (arguments.size() == 1) {
+ String filename = url.getPath();
+ String ending = filename.substring(filename
+ .lastIndexOf(".") + 1);
+
+ if (ending.equals("rdf") || ending.equals("owl"))
+ ksClass = OWLFile.class;
+ else if (ending.equals("nt"))
+ ksClass = OWLFile.class;
+ else if (ending.equals("kb"))
+ ksClass = KBFile.class;
+ else {
+ System.err.println("Warning: no format given for "
+ + arguments.get(0)
+ + " and could not detect it. Chosing RDF/XML.");
+ ksClass = OWLFile.class;
+ }
+
+ importedFiles.put(url, ksClass);
+ } else {
+ String formatString = arguments.get(1);
+
+ if (formatString.equals("RDF/XML"))
+ ksClass = OWLFile.class;
+ else if (formatString.equals("KB"))
+ ksClass = KBFile.class;
+ else if (formatString.equals("SPARQL"))
+ ksClass = SparqlKnowledgeSource.class;
+ else if (formatString.equals("NT"))
+ ksClass = OWLFile.class;
+ else {
+ throw new RuntimeException(
+ "Unsupported knowledge source format "
+ + formatString + ". Exiting.");
+ }
+
+ importedFiles.put(url, ksClass);
+ }
+ }
+ }
+
+ return importedFiles;
+ }
+
+ private static void initComponent(ComponentManager cm, Component component)
+ throws ComponentInitException {
+ String startMessage = "initialising component \""
+ + cm.getComponentName(component.getClass()) + "\" ... ";
+ long initStartTime = System.nanoTime();
+ component.init();
+ // standard messsage is just "OK" but ca...
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