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[DL-Learner SVN] SF.net SVN: dl-learner: [588] trunk/src/dl-learner/org/dllearner
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From: <jen...@us...> - 2008-02-17 10:50:18
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Revision: 588
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=588&view=rev
Author: jenslehmann
Date: 2008-02-17 02:50:06 -0800 (Sun, 17 Feb 2008)
Log Message:
-----------
- created ComponentInitException (thrown when exceptions occur during component initialisation)
- abstract init method in Component now throws ComponentInitException
- @developers: please update your code accordingingly (currently I only added default try-catch-blocks)
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/cli/Start.java
trunk/src/dl-learner/org/dllearner/core/Component.java
trunk/src/dl-learner/org/dllearner/gui/KnowledgeSourcePanel.java
trunk/src/dl-learner/org/dllearner/gui/LearningAlgorithmPanel.java
trunk/src/dl-learner/org/dllearner/gui/LearningProblemPanel.java
trunk/src/dl-learner/org/dllearner/gui/MiniGUI.java
trunk/src/dl-learner/org/dllearner/gui/ReasonerPanel.java
trunk/src/dl-learner/org/dllearner/reasoning/DIGHTTPConnector.java
trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java
trunk/src/dl-learner/org/dllearner/test/ComponentTest.java
trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/core/ComponentInitException.java
Modified: trunk/src/dl-learner/org/dllearner/cli/Start.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/cli/Start.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/cli/Start.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -44,6 +44,7 @@
import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
import org.dllearner.algorithms.refinement.ROLearner;
import org.dllearner.core.Component;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.LearningAlgorithm;
@@ -119,15 +120,22 @@
logger.addAppender(consoleAppender);
logger.setLevel(Level.INFO);
- Start start = new Start(file);
+ Start start = null;
+ try {
+ start = new Start(file);
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
start.start(inQueryMode);
}
/**
* Initialise all components based on conf file.
* @param file Conf file to read.
+ * @throws ComponentInitException
*/
- public Start(File file) {
+ public Start(File file) throws ComponentInitException {
String baseDir = file.getParentFile().getPath();
// create component manager instance
@@ -542,7 +550,7 @@
}
}
- private static void initComponent(ComponentManager cm, Component component) {
+ private static void initComponent(ComponentManager cm, Component component) throws ComponentInitException {
String startMessage = "initialising component \"" + cm.getComponentName(component.getClass())
+ "\" ... ";
long initStartTime = System.nanoTime();
Modified: trunk/src/dl-learner/org/dllearner/core/Component.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/Component.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/core/Component.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -52,7 +52,7 @@
/**
* Method to be called after the component has been configured.
*/
- public abstract void init();
+ public abstract void init() throws ComponentInitException;
/**
* Applies a configuration option to this component.
Added: trunk/src/dl-learner/org/dllearner/core/ComponentInitException.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentInitException.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentInitException.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -0,0 +1,46 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.core;
+
+/**
+ * Exception which is thrown when a component cannot be intialised,
+ * e.g. due to bad configuration parameteres or unforeseen
+ * circumstances unreachable web files. It can encapsulate arbitrary
+ * exceptions occuring during initialisation.
+ *
+ * @author Jens Lehmann
+ *
+ */
+public class ComponentInitException extends Exception {
+
+ private static final long serialVersionUID = -3550079897929658317L;
+
+ public ComponentInitException(String message) {
+ super(message);
+ }
+
+ public ComponentInitException(Exception exception) {
+ super(exception);
+ }
+
+ public ComponentInitException(String message, Exception exception) {
+ super(message, exception);
+ }
+}
Modified: trunk/src/dl-learner/org/dllearner/gui/KnowledgeSourcePanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/KnowledgeSourcePanel.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/gui/KnowledgeSourcePanel.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -26,6 +26,8 @@
import java.awt.Color;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
+
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.KnowledgeSource;
/**
@@ -116,7 +118,12 @@
*/
public void init() {
if (config.getKnowledgeSource() != null && config.getURI() != null) {
- config.getKnowledgeSource().init();
+ try {
+ config.getKnowledgeSource().init();
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
config.setInitKnowledgeSource(true);
System.out.println("init KnowledgeSource");
startGUI.updateTabColors();
Modified: trunk/src/dl-learner/org/dllearner/gui/LearningAlgorithmPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/LearningAlgorithmPanel.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/gui/LearningAlgorithmPanel.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -27,6 +27,7 @@
import java.awt.event.ActionListener;
import java.util.List;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblemUnsupportedException;
@@ -127,7 +128,12 @@
public void init() {
setLearningAlgorithm();
if (config.getLearningProblem() != null) {
- config.getLearningAlgorithm().init();
+ try {
+ config.getLearningAlgorithm().init();
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
config.setInitLearningAlgorithm(true);
System.out.println("init LearningAlgorithm");
startGUI.updateTabColors();
Modified: trunk/src/dl-learner/org/dllearner/gui/LearningProblemPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/LearningProblemPanel.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/gui/LearningProblemPanel.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -26,6 +26,8 @@
import java.awt.event.ActionListener;
import java.util.List;
import javax.swing.*;
+
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.LearningProblem;
/**
@@ -121,7 +123,12 @@
private void init() {
setLearningProblem();
if (config.getReasoner() != null && config.getLearningProblem() != null) {
- config.getLearningProblem().init();
+ try {
+ config.getLearningProblem().init();
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
config.setInitLearningProblem(true);
System.out.println("init LearningProblem");
startGUI.updateTabColors();
Modified: trunk/src/dl-learner/org/dllearner/gui/MiniGUI.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/MiniGUI.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/gui/MiniGUI.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -39,6 +39,7 @@
import javax.swing.JTextField;
import org.dllearner.algorithms.refinement.ROLearner;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.LearningAlgorithm;
@@ -134,12 +135,22 @@
// (everything else will cause an exception)
KnowledgeSource source = cm.knowledgeSource(OWLFile.class);
cm.applyConfigEntry(source, "url", selectedFile.toURI().toString());
- source.init();
+ try {
+ source.init();
+ } catch (ComponentInitException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
// use a reasoner to find out which instances exist
// in the background knowledge
ReasonerComponent reasoner = cm.reasoner(DIGReasoner.class, source);
- reasoner.init();
+ try {
+ reasoner.init();
+ } catch (ComponentInitException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
rs = cm.reasoningService(reasoner);
Set<Individual> individualsSet = rs.getIndividuals();
individuals = new LinkedList<Individual>(individualsSet);
@@ -160,7 +171,12 @@
// create a positive only learning problem
LearningProblem lp = cm.learningProblem(PosOnlyDefinitionLP.class, rs);
cm.applyConfigEntry(lp, "positiveExamples", exampleSet);
- lp.init();
+ try {
+ lp.init();
+ } catch (ComponentInitException e2) {
+ // TODO Auto-generated catch block
+ e2.printStackTrace();
+ }
// try the refinement operator based learning algorithm to solve
// the problem
@@ -171,7 +187,12 @@
// TODO Auto-generated catch block
e1.printStackTrace();
}
- la.init();
+ try {
+ la.init();
+ } catch (ComponentInitException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
la.start();
// wait for a solution (note that not all learning problems have a
Modified: trunk/src/dl-learner/org/dllearner/gui/ReasonerPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ReasonerPanel.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/gui/ReasonerPanel.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -28,6 +28,7 @@
import javax.swing.*;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ReasonerComponent;
/**
@@ -127,7 +128,12 @@
public void init() {
setReasoner();
if (config.getKnowledgeSource() != null && config.getReasoner() != null) {
- config.getReasoner().init();
+ try {
+ config.getReasoner().init();
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
System.out.println("init Reasoner");
// set ReasoningService
config.setReasoningService(config.getComponentManager()
Modified: trunk/src/dl-learner/org/dllearner/reasoning/DIGHTTPConnector.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/DIGHTTPConnector.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/reasoning/DIGHTTPConnector.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -67,7 +67,13 @@
public URI newKB() {
NewKBDocument newKB = NewKBDocument.Factory.newInstance();
newKB.addNewNewKB();
- String answer = sendAndReceive(newKB.toString());
+ String answer = "";
+ try {
+ answer = sendAndReceive(newKB.toString());
+ } catch (IOException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
ResponseDocument rd = parse(answer);
IdRespType rt = rd.getResponse();
@@ -89,15 +95,22 @@
public boolean releaseKB(URI kbURI) {
ReleaseKBDocument releaseKB = ReleaseKBDocument.Factory.newInstance();
releaseKB.addNewReleaseKB().setUri(kbURI.toString());
- String answer = sendAndReceive(releaseKB.toString());
+ String answer = "";
+ try {
+ answer = sendAndReceive(releaseKB.toString());
+ } catch (IOException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
ResponseDocument rd = parse(answer);
return rd.getResponse().isSetOk();
}
- public String getIdentifier() {
+ public String getIdentifier() throws IOException {
GetIdentifierDocument gid = GetIdentifierDocument.Factory.newInstance();
gid.addNewGetIdentifier();
- String answer = sendAndReceive(gid.toString());
+ String answer = "";
+ answer = sendAndReceive(gid.toString());
IdentifierDocument id = null;
try {
id = IdentifierDocument.Factory.parse(answer);
@@ -111,7 +124,7 @@
}
// tell-Anfrage als XML-String schicken
- public ResponseDocument tells(String tells) {
+ public ResponseDocument tells(String tells) throws IOException {
return parse(sendAndReceive(tells));
}
@@ -121,7 +134,13 @@
public ResponsesDocument asks(String asks) {
askCounter++;
- String answer = sendAndReceive(asks);
+ String answer = "";
+ try {
+ answer = sendAndReceive(asks);
+ } catch (IOException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
ResponsesDocument rd = null;
try {
rd = ResponsesDocument.Factory.parse(answer);
@@ -142,13 +161,13 @@
return rd;
}
- private String sendAndReceive(String send) {
+ private String sendAndReceive(String send) throws IOException {
StringBuilder answer = new StringBuilder();
// String an DIG-Reasoner schicken
HttpURLConnection connection;
- try {
+// try {
connection = (HttpURLConnection) url.openConnection();
connection.setDoOutput(true);
@@ -174,10 +193,10 @@
br.close();
- } catch (IOException e) {
- System.out.println("Communication problem with DIG Reasoner. Please make sure there is a DIG reasoner running at " + url + " and try again.");
- System.exit(0);
- }
+// } catch (IOException e) {
+// System.out.println("Communication problem with DIG Reasoner. Please make sure there is a DIG reasoner running at " + url + " and try again.");
+// System.exit(0);
+// }
if(protocolFile != null)
Files.appendFile(protocolFile, "DIG code received from reasoner:\n\n"+answer+"\n\n");
Modified: trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -20,6 +20,7 @@
package org.dllearner.reasoning;
import java.io.File;
+import java.io.IOException;
import java.net.MalformedURLException;
import java.net.URI;
import java.net.URL;
@@ -36,6 +37,7 @@
import javax.xml.namespace.QName;
import org.apache.xmlbeans.XmlCursor;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.OntologyFormat;
import org.dllearner.core.ReasonerComponent;
@@ -112,7 +114,7 @@
}
@Override
- public void init() {
+ public void init() throws ComponentInitException {
// if a DIG protocol is written clear the file first
if(writeDIGProtocol) {
if(digProtocolFile == null)
@@ -123,7 +125,11 @@
connector = new DIGHTTPConnector(reasonerURL);
}
- identifier = connector.getIdentifier();
+ try {
+ identifier = connector.getIdentifier();
+ } catch (IOException e1) {
+ throw new ComponentInitException("Communication problem with DIG Reasoner. Please make sure there is a DIG reasoner running at " + reasonerURL + " and try again.", e1);
+ }
kbURI = connector.newKB();
// asks-Prefix entsprechend der KB-URI initialisieren
@@ -144,7 +150,13 @@
for (KnowledgeSource source : sources) {
sb.append(source.toDIG(kbURI));
- ResponseDocument rd = connector.tells(sb.toString());
+ ResponseDocument rd = null;
+ try {
+ rd = connector.tells(sb.toString());
+ } catch (IOException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
if (!rd.getResponse().isSetOk()) {
System.err.println("DIG-Reasoner cannot read knowledgebase.");
System.exit(0);
Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -5,6 +5,7 @@
import java.util.SortedSet;
import java.util.TreeSet;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.ReasonerComponent;
import org.dllearner.core.ReasoningMethodUnsupportedException;
@@ -36,7 +37,12 @@
public FastRetrievalReasoner(Set<KnowledgeSource> sources) {
rc = new DIGReasoner(sources);
- rc.init();
+ try {
+ rc.init();
+ } catch (ComponentInitException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
atomicConcepts = rc.getAtomicConcepts();
atomicRoles = rc.getAtomicRoles();
individuals = rc.getIndividuals();
Modified: trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -41,6 +41,7 @@
import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
import org.dllearner.algorithms.refinement.ROLearner;
import org.dllearner.core.Component;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.LearningAlgorithm;
@@ -262,9 +263,10 @@
/**
* Initialise all components.
* @param id Session ID.
+ * @throws ComponentInitException
*/
@WebMethod
- public void initAll(int id) throws ClientNotKnownException {
+ public void initAll(int id) throws ClientNotKnownException, ComponentInitException {
ClientState state = getState(id);
for(KnowledgeSource ks : state.getKnowledgeSources())
ks.init();
@@ -279,9 +281,10 @@
* @param componentID Component-ID.
* @throws ClientNotKnownException Thrown if the client ID is nor registered.
* @throws UnknownComponentException Thrown if the component is unknown.
+ * @throws ComponentInitException
*/
@WebMethod
- public void init(int id, int componentID) throws ClientNotKnownException, UnknownComponentException {
+ public void init(int id, int componentID) throws ClientNotKnownException, UnknownComponentException, ComponentInitException {
ClientState state = getState(id);
Component component = state.getComponent(componentID);
component.init();
Modified: trunk/src/dl-learner/org/dllearner/test/ComponentTest.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/ComponentTest.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/test/ComponentTest.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -24,6 +24,7 @@
import java.util.TreeSet;
import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.KnowledgeSource;
import org.dllearner.core.LearningAlgorithm;
@@ -45,8 +46,9 @@
/**
* @param args
+ * @throws ComponentInitException
*/
- public static void main(String[] args) {
+ public static void main(String[] args) throws ComponentInitException {
// get singleton instance of component manager
ComponentManager cm = ComponentManager.getInstance();
Modified: trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java 2008-02-17 10:11:48 UTC (rev 587)
+++ trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java 2008-02-17 10:50:06 UTC (rev 588)
@@ -31,6 +31,7 @@
import org.apache.log4j.Logger;
import org.apache.log4j.SimpleLayout;
import org.dllearner.cli.Start;
+import org.dllearner.core.ComponentInitException;
import org.dllearner.core.ComponentManager;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
@@ -84,7 +85,13 @@
// the first read of the file is used to detect the examples
// and set up the splits correctly according to our validation
// method
- Start start = new Start(file);
+ Start start = null;
+ try {
+ start = new Start(file);
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
LearningProblem lp = start.getLearningProblem();
ReasoningService rs = start.getReasoningService();
@@ -162,7 +169,12 @@
for(int currFold=0; currFold<folds; currFold++) {
// we always perform a full initialisation to make sure that
// no objects are reused
- start = new Start(file);
+ try {
+ start = new Start(file);
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
lp = start.getLearningProblem();
Set<String> pos = Datastructures.individualSetToStringSet(trainingSetsPos.get(currFold));
Set<String> neg = Datastructures.individualSetToStringSet(trainingSetsNeg.get(currFold));
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