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[DL-Learner SVN] SF.net SVN: dl-learner: [489] trunk/src/dl-learner/org/dllearner
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From: <jen...@us...> - 2008-02-04 14:54:12
|
Revision: 489
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=489&view=rev
Author: jenslehmann
Date: 2008-02-04 06:54:07 -0800 (Mon, 04 Feb 2008)
Log Message:
-----------
- moved all tests to org.dllearner.test
- some cleanup, fixed warnings
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
trunk/src/dl-learner/org/dllearner/server/ClientState.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/test/ComponentTest.java
trunk/src/dl-learner/org/dllearner/test/FaCTBugDemo.java
trunk/src/dl-learner/org/dllearner/test/JenaHTTPTest.java
trunk/src/dl-learner/org/dllearner/test/JenaQueryToResultSpeedTest.java
trunk/src/dl-learner/org/dllearner/test/SparqlExtractionTest.java
trunk/src/dl-learner/org/dllearner/test/junit/
trunk/src/dl-learner/org/dllearner/test/junit/AllTestsRunner.java
trunk/src/dl-learner/org/dllearner/test/junit/ComponentTests.java
trunk/src/dl-learner/org/dllearner/test/junit/package.html
Removed Paths:
-------------
trunk/src/dl-learner/org/dllearner/core/ComponentTest.java
trunk/src/dl-learner/org/dllearner/kb/sparql/test/
trunk/src/dl-learner/org/dllearner/reasoning/FaCTBugDemo.java
trunk/src/dl-learner/org/dllearner/test/AllTestsRunner.java
trunk/src/dl-learner/org/dllearner/test/ComponentTests.java
trunk/src/dl-learner/org/dllearner/test/package.html
Deleted: trunk/src/dl-learner/org/dllearner/core/ComponentTest.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentTest.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentTest.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -1,84 +0,0 @@
-/**
- * Copyright (C) 2007, Jens Lehmann
- *
- * This file is part of DL-Learner.
- *
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.core;
-
-import java.io.File;
-import java.util.Set;
-import java.util.TreeSet;
-
-import org.dllearner.algorithms.RandomGuesser;
-import org.dllearner.kb.OWLFile;
-import org.dllearner.learningproblems.PosNegDefinitionLP;
-import org.dllearner.reasoning.DIGReasoner;
-
-/**
- * Test for component based design.
- *
- * @author Jens Lehmann
- *
- */
-public class ComponentTest {
-
- /**
- * @param args
- */
- public static void main(String[] args) {
-
- // get singleton instance of component manager
- ComponentManager cm = ComponentManager.getInstance();
-
- // create knowledge source
- KnowledgeSource source = cm.knowledgeSource(OWLFile.class);
- String example = "examples/father.owl";
- cm.applyConfigEntry(source, "url", new File(example).toURI().toString());
- source.init();
-
- // create DIG reasoning service with standard settings
- ReasonerComponent reasoner = cm.reasoner(DIGReasoner.class, source);
- // ReasoningService rs = cm.reasoningService(DIGReasonerNew.class, source);
- reasoner.init();
- ReasoningService rs = cm.reasoningService(reasoner);
-
- // create a learning problem and set positive and negative examples
- LearningProblem lp = cm.learningProblem(PosNegDefinitionLP.class, rs);
- Set<String> positiveExamples = new TreeSet<String>();
- positiveExamples.add("http://example.com/father#stefan");
- positiveExamples.add("http://example.com/father#markus");
- positiveExamples.add("http://example.com/father#martin");
- Set<String> negativeExamples = new TreeSet<String>();
- negativeExamples.add("http://example.com/father#heinz");
- negativeExamples.add("http://example.com/father#anna");
- negativeExamples.add("http://example.com/father#michelle");
- cm.applyConfigEntry(lp, "positiveExamples", positiveExamples);
- cm.applyConfigEntry(lp, "negativeExamples", negativeExamples);
- lp.init();
-
- // create the learning algorithm
- LearningAlgorithm la = cm.learningAlgorithm(RandomGuesser.class, lp, rs);
- cm.applyConfigEntry(la, "numberOfTrees", 100);
- cm.applyConfigEntry(la, "maxDepth", 5);
- la.init();
-
- // start the algorithm and print the best concept found
- la.start();
- System.out.println(la.getBestSolution());
- }
-
-}
Modified: trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -34,6 +34,7 @@
}
// method to start thread
+ @Override
public void run() {
if (config.getLearningAlgorithm() != null)
config.getLearningAlgorithm().start();
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -160,20 +160,6 @@
}
/**
- * sends a query and returns complicated Jena List with ResultBindings
- *
- *
- * @return jena List<ResultBinding>
- */
- @Deprecated
- @SuppressWarnings( { "unchecked" })
- public List<ResultBinding> getAsList() {
- if (rs == null)
- this.send();
- return ResultSetFormatter.toList(rs);
- }
-
- /**
* Converts Jena result set to JSON.
*
* @param resultSet The result set to transform.
Deleted: trunk/src/dl-learner/org/dllearner/reasoning/FaCTBugDemo.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FaCTBugDemo.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FaCTBugDemo.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -1,65 +0,0 @@
-package org.dllearner.reasoning;
-
-import org.semanticweb.owl.model.*;
-import org.semanticweb.owl.apibinding.OWLManager;
-import org.semanticweb.owl.inference.OWLReasoner;
-import org.semanticweb.owl.inference.OWLReasonerException;
-
-import java.net.URI;
-import java.util.HashSet;
-import java.util.Set;
-import java.io.File;
-
-public class FaCTBugDemo {
-
- public static void main(String[] args) {
-
- try {
- URI uri = new File("examples/father.owl").toURI();
-
- // Create our ontology manager in the usual way.
- OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
-
- // Load a copy of the pizza ontology. We'll load the ontology from the web.
- OWLOntology ont = manager.loadOntologyFromPhysicalURI(uri);
-
- OWLReasoner reasoner = new uk.ac.manchester.cs.factplusplus.owlapi.Reasoner(manager);
- // OWLReasoner reasoner = new org.mindswap.pellet.owlapi.Reasoner(manager);
-
- // seems to be needed for some reason although no ontology is imported
- Set<OWLOntology> importsClosure = manager.getImportsClosure(ont);
- reasoner.loadOntologies(importsClosure);
-
- reasoner.classify();
- reasoner.realise();
-
- OWLDataFactory factory = manager.getOWLDataFactory();
-
- OWLClass male = factory.getOWLClass(URI.create("http://example.com/father#male"));
- OWLObjectProperty hasChild = factory.getOWLObjectProperty(URI.create("http://example.com/father#hasChild"));
- OWLObjectSomeRestriction hasSomeChild = factory.getOWLObjectSomeRestriction(hasChild, factory.getOWLThing());
- Set<OWLDescription> set = new HashSet<OWLDescription>();
- set.add(male);
- set.add(hasSomeChild);
- OWLDescription father = factory.getOWLObjectIntersectionOf(set);
- OWLIndividual martin = factory.getOWLIndividual(URI.create("http://example.com/father#martin"));
-
- if(reasoner.hasType(martin, father, false))
- System.out.println("positive result"); // Pellet 1.5.1 (correct)
- else
- System.out.println("negative result"); // FaCT++ 1.10
-
- }
- catch(UnsupportedOperationException exception) {
- System.out.println("Unsupported reasoner operation.");
- }
- catch(OWLReasonerException ex) {
- System.out.println("Reasoner error: " + ex.getMessage());
- }
- catch (OWLOntologyCreationException e) {
- System.out.println("Could not load the pizza ontology: " + e.getMessage());
- } catch (Exception e) {
- e.printStackTrace();
- }
- }
-}
Modified: trunk/src/dl-learner/org/dllearner/server/ClientState.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/server/ClientState.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/server/ClientState.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -34,7 +34,6 @@
import org.dllearner.core.ReasoningService;
import org.dllearner.kb.OWLFile;
import org.dllearner.kb.sparql.SparqlKnowledgeSource;
-import org.dllearner.kb.sparql.SparqlQuery;
import org.dllearner.kb.sparql.SparqlQueryThreaded;
/**
Deleted: trunk/src/dl-learner/org/dllearner/test/AllTestsRunner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/AllTestsRunner.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/test/AllTestsRunner.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -1,39 +0,0 @@
-/**
- * Copyright (C) 2007-2008, Jens Lehmann
- *
- * This file is part of DL-Learner.
- *
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.test;
-
-import org.junit.runner.JUnitCore;
-
-/**
- * Class designed to run all DL-Learner component tests. Note,
- * that in Eclipse (and similar in other IDEs) you can run
- * JUnit tests by clicking on a file containing methods annotated
- * with @Test and "Run As JUnit Test".
- *
- * @author Jens Lehmann
- *
- */
-public class AllTestsRunner {
-
- public static void main(String[] args) {
- JUnitCore.main("org.dllearner.test.ComponentTests");
- }
-
-}
Copied: trunk/src/dl-learner/org/dllearner/test/ComponentTest.java (from rev 488, trunk/src/dl-learner/org/dllearner/core/ComponentTest.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/ComponentTest.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/ComponentTest.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,90 @@
+/**
+ * Copyright (C) 2007, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.test;
+
+import java.io.File;
+import java.util.Set;
+import java.util.TreeSet;
+
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.reasoning.DIGReasoner;
+
+/**
+ * Test for component based design.
+ *
+ * @author Jens Lehmann
+ *
+ */
+public class ComponentTest {
+
+ /**
+ * @param args
+ */
+ public static void main(String[] args) {
+
+ // get singleton instance of component manager
+ ComponentManager cm = ComponentManager.getInstance();
+
+ // create knowledge source
+ KnowledgeSource source = cm.knowledgeSource(OWLFile.class);
+ String example = "examples/father.owl";
+ cm.applyConfigEntry(source, "url", new File(example).toURI().toString());
+ source.init();
+
+ // create DIG reasoning service with standard settings
+ ReasonerComponent reasoner = cm.reasoner(DIGReasoner.class, source);
+ // ReasoningService rs = cm.reasoningService(DIGReasonerNew.class, source);
+ reasoner.init();
+ ReasoningService rs = cm.reasoningService(reasoner);
+
+ // create a learning problem and set positive and negative examples
+ LearningProblem lp = cm.learningProblem(PosNegDefinitionLP.class, rs);
+ Set<String> positiveExamples = new TreeSet<String>();
+ positiveExamples.add("http://example.com/father#stefan");
+ positiveExamples.add("http://example.com/father#markus");
+ positiveExamples.add("http://example.com/father#martin");
+ Set<String> negativeExamples = new TreeSet<String>();
+ negativeExamples.add("http://example.com/father#heinz");
+ negativeExamples.add("http://example.com/father#anna");
+ negativeExamples.add("http://example.com/father#michelle");
+ cm.applyConfigEntry(lp, "positiveExamples", positiveExamples);
+ cm.applyConfigEntry(lp, "negativeExamples", negativeExamples);
+ lp.init();
+
+ // create the learning algorithm
+ LearningAlgorithm la = cm.learningAlgorithm(RandomGuesser.class, lp, rs);
+ cm.applyConfigEntry(la, "numberOfTrees", 100);
+ cm.applyConfigEntry(la, "maxDepth", 5);
+ la.init();
+
+ // start the algorithm and print the best concept found
+ la.start();
+ System.out.println(la.getBestSolution());
+ }
+
+}
Deleted: trunk/src/dl-learner/org/dllearner/test/ComponentTests.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/ComponentTests.java 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/test/ComponentTests.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -1,54 +0,0 @@
-/**
- * Copyright (C) 2007-2008, Jens Lehmann
- *
- * This file is part of DL-Learner.
- *
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.test;
-
-import java.util.List;
-
-import org.dllearner.core.Component;
-import org.dllearner.core.ComponentManager;
-import org.junit.Test;
-import static org.junit.Assert.*;
-
-/**
- * A suite of JUnit tests related to the DL-Learner component architecture.
- *
- * @author Jens Lehmann
- *
- */
-public class ComponentTests {
-
- /**
- * Checks whether all components implement the getName() method. While it
- * cannot be enforced to implement a static method, it should be done (e.g.
- * to be used as label for the component in GUIs).
- */
- @Test
- public void nameTest() {
- String defaultName = Component.getName();
- ComponentManager cm = ComponentManager.getInstance();
- List<Class<? extends Component>> components = cm.getComponents();
- for (Class<? extends Component> component : components) {
- String componentName = cm.getComponentName(component);
- assertFalse(component + " does not overwrite getName().", componentName
- .equals(defaultName));
- }
- }
-
-}
Copied: trunk/src/dl-learner/org/dllearner/test/FaCTBugDemo.java (from rev 488, trunk/src/dl-learner/org/dllearner/reasoning/FaCTBugDemo.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/FaCTBugDemo.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/FaCTBugDemo.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,65 @@
+package org.dllearner.test;
+
+import org.semanticweb.owl.model.*;
+import org.semanticweb.owl.apibinding.OWLManager;
+import org.semanticweb.owl.inference.OWLReasoner;
+import org.semanticweb.owl.inference.OWLReasonerException;
+
+import java.net.URI;
+import java.util.HashSet;
+import java.util.Set;
+import java.io.File;
+
+public class FaCTBugDemo {
+
+ public static void main(String[] args) {
+
+ try {
+ URI uri = new File("examples/father.owl").toURI();
+
+ // Create our ontology manager in the usual way.
+ OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
+
+ // Load a copy of the pizza ontology. We'll load the ontology from the web.
+ OWLOntology ont = manager.loadOntologyFromPhysicalURI(uri);
+
+ OWLReasoner reasoner = new uk.ac.manchester.cs.factplusplus.owlapi.Reasoner(manager);
+ // OWLReasoner reasoner = new org.mindswap.pellet.owlapi.Reasoner(manager);
+
+ // seems to be needed for some reason although no ontology is imported
+ Set<OWLOntology> importsClosure = manager.getImportsClosure(ont);
+ reasoner.loadOntologies(importsClosure);
+
+ reasoner.classify();
+ reasoner.realise();
+
+ OWLDataFactory factory = manager.getOWLDataFactory();
+
+ OWLClass male = factory.getOWLClass(URI.create("http://example.com/father#male"));
+ OWLObjectProperty hasChild = factory.getOWLObjectProperty(URI.create("http://example.com/father#hasChild"));
+ OWLObjectSomeRestriction hasSomeChild = factory.getOWLObjectSomeRestriction(hasChild, factory.getOWLThing());
+ Set<OWLDescription> set = new HashSet<OWLDescription>();
+ set.add(male);
+ set.add(hasSomeChild);
+ OWLDescription father = factory.getOWLObjectIntersectionOf(set);
+ OWLIndividual martin = factory.getOWLIndividual(URI.create("http://example.com/father#martin"));
+
+ if(reasoner.hasType(martin, father, false))
+ System.out.println("positive result"); // Pellet 1.5.1 (correct)
+ else
+ System.out.println("negative result"); // FaCT++ 1.10
+
+ }
+ catch(UnsupportedOperationException exception) {
+ System.out.println("Unsupported reasoner operation.");
+ }
+ catch(OWLReasonerException ex) {
+ System.out.println("Reasoner error: " + ex.getMessage());
+ }
+ catch (OWLOntologyCreationException e) {
+ System.out.println("Could not load the pizza ontology: " + e.getMessage());
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+}
Added: trunk/src/dl-learner/org/dllearner/test/JenaHTTPTest.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/JenaHTTPTest.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/JenaHTTPTest.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,102 @@
+package org.dllearner.test;
+
+import java.io.BufferedInputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.net.InetAddress;
+import java.net.Socket;
+import java.net.URLEncoder;
+
+import com.hp.hpl.jena.sparql.engine.http.QueryEngineHTTP;
+
+public class JenaHTTPTest {
+ public static void main(String[] args) throws Exception{
+
+ String query="SELECT DISTINCT ?object\n"+
+ "FROM <http://dbpedia.org>\n"+
+ "WHERE { <http://dbpedia.org/resource/Leipzig> <http://www.w3.org/2000/01/rdf-schema#label> ?object}\n";
+
+ double time=0;
+ for (int i=0; i<101; i++)
+ {
+ if (i!=0) time+=JenaHTTPTest.httpQuery(query);
+ }
+ time=time/100;
+ System.out.println("Durchschnittliche Zeit f�r eine Anfrage per Http-Methode: "+time);
+
+ time=0;
+ for (int i=0; i<101; i++)
+ {
+ if (i!=0) time+=JenaHTTPTest.jenaQuery(query);
+ }
+ time=time/100;
+ System.out.println("Durchschnittliche Zeit f�r eine Anfrage per Jena-Methode: "+time);
+ }
+
+ private static double jenaQuery(String query)
+ {
+ double start=System.currentTimeMillis();
+ QueryEngineHTTP queryExecution=new QueryEngineHTTP("http://localhost:8890/sparql",query);
+ queryExecution.addDefaultGraph("http://dbpedia.org");
+ // Jena access to DBpedia SPARQL endpoint
+ // ResultSet rs =
+ queryExecution.execSelect();
+ double end=System.currentTimeMillis();
+ return ((end-start)/1000);
+ }
+
+ private static double httpQuery(String query) throws Exception
+ {
+ char value[]={13,10};
+ String cut=new String(value);
+ String test="GET /sparql?default-graph-uri=http%3A%2F%2Fdbpedia.org&query=" +
+ URLEncoder.encode(query, "UTF-8")+
+ "&format=application%2Fsparql-results%2Bxml HTTP/1.1"+cut+
+ "Host: localhost"+cut+
+ "Connection: close"+cut+
+ "Accept: text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"+cut+
+ "Accept-Language: de-de,de;q=0.8,en-us;q=0.5,en;q=0.3"+cut+
+ "Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7"+cut+
+ "User-Agent: Mozilla/5.0 (Windows; U; Windows NT 5.1; de; rv:1.8.1.4) Gecko/20070515 Firefox/2.0.0.4 Web-Sniffer/1.0.24"+cut+
+ cut;
+ String retval="";
+ //
+ double start=System.currentTimeMillis();
+ byte resp[]=null;
+
+ try{
+ Socket SparqlServer=new Socket(InetAddress.getByName("localhost"),8890);
+ String request=test;
+ // send request
+ (SparqlServer.getOutputStream()).write(request.getBytes());
+
+ //get Response
+ resp=readBuffer(new BufferedInputStream(SparqlServer.getInputStream()));
+ retval=new String(resp);
+ retval=retval.substring(retval.indexOf(cut+""+cut)+4);
+
+ SparqlServer.close();
+ } catch (Exception e){}
+ double end=System.currentTimeMillis();
+ return (end-start)/1000;
+ }
+
+ private static byte[] readBuffer(InputStream IS)
+ throws IOException{
+ byte buffer[] = new byte[0xffff];
+ int nbytes=0;
+ byte resp[]=new byte[0];
+ while ((nbytes=IS.read(buffer))!=-1) {
+ byte tmp[]=new byte[resp.length+nbytes];
+ int i=0;
+ for (;i<resp.length;i++){
+ tmp[i]=resp[i];
+ }
+ for(int a=0;a<nbytes;a++,i++){
+ tmp[i]=buffer[a];
+ }
+ resp=tmp;
+ }
+ return resp;
+ }
+}
Copied: trunk/src/dl-learner/org/dllearner/test/JenaQueryToResultSpeedTest.java (from rev 488, trunk/src/dl-learner/org/dllearner/kb/sparql/test/JenaQueryToResultSpeedTest.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/JenaQueryToResultSpeedTest.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/JenaQueryToResultSpeedTest.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,163 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.test;
+
+import org.dllearner.kb.sparql.SparqlQuery;
+import org.dllearner.kb.sparql.configuration.SparqlEndpoint;
+
+import com.hp.hpl.jena.query.ResultSet;
+import com.hp.hpl.jena.query.ResultSetFormatter;
+
+
+public class JenaQueryToResultSpeedTest {
+ static boolean print_flag=false;
+
+ public static void main(String[] args) {
+
+ String queryString = "PREFIX dbpedia2: <http://dbpedia.org/property/> "
+ + "PREFIX skos: <http://www.w3.org/2004/02/skos/core#>"
+ + "SELECT ?episode ?chalkboard_gag WHERE { ?episode skos:subject"
+ + " <http://dbpedia.org/resource/Category:The_Simpsons_episodes%2C_season_12>."
+ + " ?episode dbpedia2:blackboard ?chalkboard_gag }";
+
+ int howOften=20;
+ testJenaAsXML(howOften, queryString);
+ testJenaAsList(howOften, queryString);
+ testJenaAsJSON(howOften, queryString);
+ testJenaAsJSONandBack(howOften, queryString);
+
+
+
+ // compareResults( queryString);
+
+ }
+
+
+ public static void testJenaAsXML(int howOften, String queryString){
+ SparqlEndpoint sse = SparqlEndpoint.dbpediaEndpoint();
+ SparqlQuery sqJena = new SparqlQuery(queryString, sse);
+ // first query is not counted
+ ResultSet rs = sqJena.send();
+ SparqlQuery.getAsXMLString(rs);
+ long now = System.currentTimeMillis();
+ long tmp = now;
+ for (int i = 0; i < howOften; i++) {
+
+ rs = sqJena.send();
+ SparqlQuery.getAsXMLString(rs);
+ p("Jena as XML needed: "
+ + (System.currentTimeMillis() - tmp));
+ tmp = System.currentTimeMillis();
+ }
+ long total=System.currentTimeMillis() - now;
+ System.out.println("Jena as XML total: " + total +
+ " ms , average: "+ (total/howOften) );
+
+ }
+
+ public static void testJenaAsList(int howOften, String queryString){
+ SparqlEndpoint sse = SparqlEndpoint.dbpediaEndpoint();
+ SparqlQuery sqJena = new SparqlQuery(queryString, sse);
+ // first query is not counted
+ //sqJena.getAsList();
+ sqJena.send();
+ long now = System.currentTimeMillis();
+ long tmp = now;
+ for (int i = 0; i < howOften; i++) {
+
+ // sqJena.getAsList();
+ ResultSet rs = sqJena.send();
+ ResultSetFormatter.toList(rs);
+ p("Jena as List needed: "
+ + (System.currentTimeMillis() - tmp));
+ tmp = System.currentTimeMillis();
+
+ }
+ long total=System.currentTimeMillis() - now;
+ System.out.println("Jena as List total: " + total +
+ " ms , average: "+ (total/howOften) );
+
+ }
+
+ public static void testJenaAsJSON(int howOften, String queryString){
+ SparqlEndpoint sse = SparqlEndpoint.dbpediaEndpoint();
+ SparqlQuery sqJena = new SparqlQuery(queryString, sse);
+ // first query is not counted
+ ResultSet rs = sqJena.send();
+ SparqlQuery.getAsJSON(rs);
+ long now = System.currentTimeMillis();
+ long tmp = now;
+ for (int i = 0; i < howOften; i++) {
+
+ rs = sqJena.send();
+ SparqlQuery.getAsJSON(rs);
+ p("Jena as JSON needed: "
+ + (System.currentTimeMillis() - tmp));
+ tmp = System.currentTimeMillis();
+
+ }
+ long total=System.currentTimeMillis() - now;
+ System.out.println("Jena as JSON total: " + total +
+ " ms , average: "+ (total/howOften) );
+
+ }
+
+ public static void testJenaAsJSONandBack(int howOften, String queryString){
+ SparqlEndpoint sse = SparqlEndpoint.dbpediaEndpoint();
+ SparqlQuery sqJena = new SparqlQuery(queryString, sse);
+ // first query is not counted
+ ResultSet rs = sqJena.send();
+ SparqlQuery.getAsJSON(rs);
+ long now = System.currentTimeMillis();
+ long tmp = now;
+ for (int i = 0; i < howOften; i++) {
+
+ // System.out.println(sqJena.getAsJSON());
+ rs = sqJena.send();
+ String json = SparqlQuery.getAsJSON(rs);
+ SparqlQuery.JSONtoResultSet(json);
+ p("Jena as JSON and back needed: "
+ + (System.currentTimeMillis() - tmp));
+ tmp = System.currentTimeMillis();
+
+ }
+ long total=System.currentTimeMillis() - now;
+ System.out.println("Jena as JSON and back total: " + total +
+ " ms , average: "+ (total/howOften) );
+
+ }
+
+
+ public static void compareResults(String queryString) {
+ SparqlEndpoint sse = SparqlEndpoint.dbpediaEndpoint();
+ SparqlQuery sqJena = new SparqlQuery(queryString, sse);
+ // SparqlQueryConventional sqConv=new SparqlQueryConventional(sse);
+
+ ResultSet rs = sqJena.send();
+ System.out.println(SparqlQuery.getAsXMLString(rs));
+ // System.out.println(sqConv.getAsXMLString(""));
+
+ }
+
+ static void p(String s) {
+ if (print_flag)
+ System.out.println(s);
+ }
+}
Added: trunk/src/dl-learner/org/dllearner/test/SparqlExtractionTest.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/SparqlExtractionTest.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/SparqlExtractionTest.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,69 @@
+/**
+ * Copyright (C) 2007, Sebastian Hellmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.test;
+
+import java.io.File;
+import java.io.FileWriter;
+import java.net.URI;
+import java.util.LinkedList;
+
+import org.dllearner.kb.sparql.Manager;
+import org.dllearner.kb.sparql.Manipulator;
+import org.dllearner.kb.sparql.configuration.SparqlEndpoint;
+import org.dllearner.kb.sparql.configuration.SparqlQueryType;
+import org.dllearner.utilities.StringTuple;
+
+/**
+ * Test class, uses the whole thing
+ *
+ * @author Sebastian Hellmann
+ *
+ */
+public class SparqlExtractionTest {
+
+ public static void main(String[] args) {
+ System.out.println("Start");
+ // String test2 = "http://www.extraction.org/config#dbpediatest";
+ // String test = "http://www.extraction.org/config#localjoseki";
+ try {
+ // URI u = new URI(test);
+ Manager m = new Manager();
+ // m.usePredefinedConfiguration(u);
+
+ URI u2 = new URI("http://dbpedia.org/resource/Angela_Merkel");
+ m.useConfiguration(
+ SparqlQueryType.getFilterByNumber(1),SparqlEndpoint.getEndpointByNumber(1),
+ new Manipulator("",200,new LinkedList<StringTuple>(),new LinkedList<StringTuple>()),
+ 1,true,true);
+ //, ,
+ //manipulator, recursiondepth, getAllSuperClasses, closeAfterRecursion)
+
+ String filename = System.currentTimeMillis() + ".nt";
+ FileWriter fw = new FileWriter(new File(filename), true);
+ fw.write(m.extract(u2));
+ fw.flush();
+ fw.close();
+
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+
+}
Copied: trunk/src/dl-learner/org/dllearner/test/junit/AllTestsRunner.java (from rev 488, trunk/src/dl-learner/org/dllearner/test/AllTestsRunner.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/AllTestsRunner.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/junit/AllTestsRunner.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,39 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.test.junit;
+
+import org.junit.runner.JUnitCore;
+
+/**
+ * Class designed to run all DL-Learner component tests. Note,
+ * that in Eclipse (and similar in other IDEs) you can run
+ * JUnit tests by clicking on a file containing methods annotated
+ * with @Test and "Run As JUnit Test".
+ *
+ * @author Jens Lehmann
+ *
+ */
+public class AllTestsRunner {
+
+ public static void main(String[] args) {
+ JUnitCore.main("org.dllearner.test.ComponentTests");
+ }
+
+}
Copied: trunk/src/dl-learner/org/dllearner/test/junit/ComponentTests.java (from rev 488, trunk/src/dl-learner/org/dllearner/test/ComponentTests.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/ComponentTests.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/junit/ComponentTests.java 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,54 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.test.junit;
+
+import java.util.List;
+
+import org.dllearner.core.Component;
+import org.dllearner.core.ComponentManager;
+import org.junit.Test;
+import static org.junit.Assert.*;
+
+/**
+ * A suite of JUnit tests related to the DL-Learner component architecture.
+ *
+ * @author Jens Lehmann
+ *
+ */
+public class ComponentTests {
+
+ /**
+ * Checks whether all components implement the getName() method. While it
+ * cannot be enforced to implement a static method, it should be done (e.g.
+ * to be used as label for the component in GUIs).
+ */
+ @Test
+ public void nameTest() {
+ String defaultName = Component.getName();
+ ComponentManager cm = ComponentManager.getInstance();
+ List<Class<? extends Component>> components = cm.getComponents();
+ for (Class<? extends Component> component : components) {
+ String componentName = cm.getComponentName(component);
+ assertFalse(component + " does not overwrite getName().", componentName
+ .equals(defaultName));
+ }
+ }
+
+}
Copied: trunk/src/dl-learner/org/dllearner/test/junit/package.html (from rev 488, trunk/src/dl-learner/org/dllearner/test/package.html)
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/package.html (rev 0)
+++ trunk/src/dl-learner/org/dllearner/test/junit/package.html 2008-02-04 14:54:07 UTC (rev 489)
@@ -0,0 +1,7 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
+<html>
+<head></head>
+<body bgcolor="white">
+<p>DL-Learner JUnit tests.</p>
+</body>
+</html>
\ No newline at end of file
Deleted: trunk/src/dl-learner/org/dllearner/test/package.html
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/package.html 2008-02-04 11:38:43 UTC (rev 488)
+++ trunk/src/dl-learner/org/dllearner/test/package.html 2008-02-04 14:54:07 UTC (rev 489)
@@ -1,7 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
-<html>
-<head></head>
-<body bgcolor="white">
-<p>DL-Learner JUnit tests.</p>
-</body>
-</html>
\ No newline at end of file
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