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From: <sk...@us...> - 2008-10-17 13:38:53
|
Revision: 1383
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1383&view=rev
Author: sknappe
Date: 2008-10-17 13:38:47 +0000 (Fri, 17 Oct 2008)
Log Message:
-----------
bugfix mit endpoint
Modified Paths:
--------------
trunk/src/dbpedia-navigator/DLLearnerConnection.php
trunk/src/dbpedia-navigator/main.wsdl
Modified: trunk/src/dbpedia-navigator/DLLearnerConnection.php
===================================================================
--- trunk/src/dbpedia-navigator/DLLearnerConnection.php 2008-10-17 12:46:32 UTC (rev 1382)
+++ trunk/src/dbpedia-navigator/DLLearnerConnection.php 2008-10-17 13:38:47 UTC (rev 1383)
@@ -131,7 +131,7 @@
function getNaturalDescription($concept)
{
- return $this->client->getNaturalDescription($concept);
+ return $this->client->getNaturalDescription($concept, $this->endpoint);
}
function getConceptDepth()
Modified: trunk/src/dbpedia-navigator/main.wsdl
===================================================================
--- trunk/src/dbpedia-navigator/main.wsdl 2008-10-17 12:46:32 UTC (rev 1382)
+++ trunk/src/dbpedia-navigator/main.wsdl 2008-10-17 13:38:47 UTC (rev 1383)
@@ -356,6 +356,7 @@
</message>
<message name="getNaturalDescription">
<part name="arg0" type="xsd:string"></part>
+ <part name="arg1" type="xsd:string"></part>
</message>
<message name="getNaturalDescriptionResponse">
<part name="return" type="xsd:string"></part>
@@ -660,7 +661,7 @@
<output message="tns:SparqlRetrievalResponse"></output>
<fault message="tns:ParseException" name="ParseException"></fault>
</operation>
- <operation name="getNaturalDescription" parameterOrder="arg0">
+ <operation name="getNaturalDescription" parameterOrder="arg0 arg1">
<input message="tns:getNaturalDescription"></input>
<output message="tns:getNaturalDescriptionResponse"></output>
<fault message="tns:ParseException" name="ParseException"></fault>
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|
|
From: <sk...@us...> - 2008-10-17 12:46:44
|
Revision: 1382
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1382&view=rev
Author: sknappe
Date: 2008-10-17 12:46:32 +0000 (Fri, 17 Oct 2008)
Log Message:
-----------
bugfixes
Modified Paths:
--------------
trunk/src/dbpedia-navigator/ajax_generate_URL.php
trunk/src/dbpedia-navigator/ajax_get_article.php
trunk/src/dbpedia-navigator/ajax_get_subjects_from_concept.php
trunk/src/dbpedia-navigator/ajax_learn_concepts.php
Modified: trunk/src/dbpedia-navigator/ajax_generate_URL.php
===================================================================
--- trunk/src/dbpedia-navigator/ajax_generate_URL.php 2008-10-16 12:41:49 UTC (rev 1381)
+++ trunk/src/dbpedia-navigator/ajax_generate_URL.php 2008-10-17 12:46:32 UTC (rev 1382)
@@ -38,6 +38,6 @@
$url='http://'.$_SERVER['HTTP_HOST'].'/dbpedia-navigator/'.$last_action.$attributes;
- print '<a href="'.$url.'">'.$url.'</a><br/><br/>';
+ print '<font style="font-size:9px"><a href="'.$url.'">'.$url.'</a></font><br/><br/>';
}
?>
\ No newline at end of file
Modified: trunk/src/dbpedia-navigator/ajax_get_article.php
===================================================================
--- trunk/src/dbpedia-navigator/ajax_get_article.php 2008-10-16 12:41:49 UTC (rev 1381)
+++ trunk/src/dbpedia-navigator/ajax_get_article.php 2008-10-17 12:46:32 UTC (rev 1382)
@@ -7,8 +7,14 @@
$fromCache=$_POST['cache'];
if (isset($_SESSION['articles'])) $articles=$_SESSION['articles'];
- $id=$_SESSION['id'];
- $ksID=$_SESSION['ksID'];
+ if (isset($_SESSION['id'])){
+ $id=$_SESSION['id'];
+ $ksID=$_SESSION['ksID'];
+ }
+ else{
+ print "Your Session expired. Please reload.";
+ die();
+ }
//write last action into session
if (strpos($subject,"http://dbpedia.org/resource/")===0) $actionuri=substr (strrchr ($subject, "/"), 1);
@@ -62,7 +68,7 @@
// display a picture if there is one
if (isset($triples['http://dbpedia.org/property/imageCaption'])&&$triples['http://dbpedia.org/property/imageCaption'][0]['type']!='uri') $alt=$triples['http://dbpedia.org/property/imageCaption'][0]['value'];
- else if (isset($triples['http://dbpedia.org/property/caption'])&&$triples['http://dbpedia.org/property/imageCaption'][0]['type']!='uri') $alt=$triples['http://dbpedia.org/property/caption'][0]['value'];
+ else if (isset($triples['http://dbpedia.org/property/caption'])&&$triples['http://dbpedia.org/property/caption'][0]['type']!='uri') $alt=$triples['http://dbpedia.org/property/caption'][0]['value'];
else $alt='Picture of '.$artTitle;
if(isset($triples['http://xmlns.com/foaf/0.1/depiction'])&&@fopen($triples['http://xmlns.com/foaf/0.1/depiction'][0]['value'], 'r')){
Modified: trunk/src/dbpedia-navigator/ajax_get_subjects_from_concept.php
===================================================================
--- trunk/src/dbpedia-navigator/ajax_get_subjects_from_concept.php 2008-10-16 12:41:49 UTC (rev 1381)
+++ trunk/src/dbpedia-navigator/ajax_get_subjects_from_concept.php 2008-10-17 12:46:32 UTC (rev 1382)
@@ -8,8 +8,14 @@
$kb=str_replace('\"','"',$kb);
session_start();
- $id=$_SESSION['id'];
- $ksID=$_SESSION['ksID'];
+ if (isset($_SESSION['id'])){
+ $id=$_SESSION['id'];
+ $ksID=$_SESSION['ksID'];
+ }
+ else{
+ print "Your Session expired. Please reload.";
+ die();
+ }
//write last action into session
$actionuri=urlencode($kb);
$_SESSION['lastAction']='searchConceptInstances/'.$actionuri;
Modified: trunk/src/dbpedia-navigator/ajax_learn_concepts.php
===================================================================
--- trunk/src/dbpedia-navigator/ajax_learn_concepts.php 2008-10-16 12:41:49 UTC (rev 1381)
+++ trunk/src/dbpedia-navigator/ajax_learn_concepts.php 2008-10-17 12:46:32 UTC (rev 1382)
@@ -9,8 +9,14 @@
if (isset($_SESSION['positive'])) $positives=$_SESSION['positive'];
if (isset($_SESSION['negative'])) $negatives=$_SESSION['negative'];
- $id=$_SESSION['id'];
- $ksID=$_SESSION['ksID'];
+ if (isset($_SESSION['id'])){
+ $id=$_SESSION['id'];
+ $ksID=$_SESSION['ksID'];
+ }
+ else{
+ print "Your Session expired. Please reload.";
+ die();
+ }
session_write_close();
setRunning($id,"true");
$concept="";
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|
|
From: <ku...@us...> - 2008-10-16 12:41:54
|
Revision: 1381
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1381&view=rev
Author: kurzum
Date: 2008-10-16 12:41:49 +0000 (Thu, 16 Oct 2008)
Log Message:
-----------
added fact to build.xml scripts
Modified Paths:
--------------
trunk/build.xml
Modified: trunk/build.xml
===================================================================
--- trunk/build.xml 2008-10-15 11:21:49 UTC (rev 1380)
+++ trunk/build.xml 2008-10-16 12:41:49 UTC (rev 1381)
@@ -265,14 +265,14 @@
<map from="${removeprefix}" to="."/>
</pathconvert>
- <echo file="bin/quickstart.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.cli.QuickStart"/>
- <echo file="bin/dllearner.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.cli.Start %*"/>
- <echo file="bin/ws.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.server.DLLearnerWSStart %*"/>
- <echo file="bin/gui.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.gui.StartGUI %*"/>
- <echo file="bin/quickstart" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
- <echo file="bin/dllearner" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
- <echo file="bin/ws" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
- <echo file="bin/gui" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
+ <echo file="bin/quickstart.bat" message="java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringWin} org.dllearner.cli.QuickStart"/>
+ <echo file="bin/dllearner.bat" message="java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringWin} org.dllearner.cli.Start %*"/>
+ <echo file="bin/ws.bat" message="java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringWin} org.dllearner.server.DLLearnerWSStart %*"/>
+ <echo file="bin/gui.bat" message="java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringWin} org.dllearner.gui.StartGUI %*"/>
+ <echo file="bin/quickstart" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
+ <echo file="bin/dllearner" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
+ <echo file="bin/ws" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
+ <echo file="bin/gui" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -Djava.library.path=lib/fact/ -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
</target>
<!-- generate Javadoc -->
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|
|
From: <hee...@us...> - 2008-10-15 11:21:53
|
Revision: 1380
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1380&view=rev
Author: heeroyuy
Date: 2008-10-15 11:21:49 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
-checkstyle warnings fixed
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java
trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java 2008-10-15 11:15:18 UTC (rev 1379)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java 2008-10-15 11:21:49 UTC (rev 1380)
@@ -195,7 +195,7 @@
private void setInformation() {
if(eval!=null) {
//sets the accuracy of the selected concept
- conceptText.append(eval.getDescription().toManchesterSyntaxString(model.getURI().toString()+"#",null));
+ conceptText.append(eval.getDescription().toManchesterSyntaxString(model.getURI().toString()+"#", null));
double acc = (eval.getAccuracy())*100;
accuracyText.append(String.valueOf(acc)+"%");
//sets the positive examples that are covered
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 11:15:18 UTC (rev 1379)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 11:21:49 UTC (rev 1380)
@@ -120,7 +120,7 @@
//checker = new OWLDescriptionChecker(editorKit);
editor = new ExpressionEditor<OWLDescription>(editorKit, editorKit.getModelManager().getOWLExpressionCheckerFactory().getOWLDescriptionChecker());
editor.setExpressionObject(description);
- dllearner = new DLLearnerView(frame, label, this);
+ dllearner = new DLLearnerView(frame, label);
action = new ActionHandler(this.action, null, dllearner, null,
editorKit);
tabbedPane = new JTabbedPane();
@@ -363,9 +363,8 @@
* @param current OWLFrame
* @param label String
*/
- public DLLearnerView(OWLFrame<OWLClass> current, String label, OWLClassDescriptionEditorWithDLLearnerTab tab) {
+ public DLLearnerView(OWLFrame<OWLClass> current, String label) {
classSelectorPanel = new OWLClassSelectorPanel(editorKit);
- mainWindow = tab;
classSelectorPanel.firePropertyChange("test", false, true);
URL iconUrl = this.getClass().getResource("arrow.gif");
icon = new ImageIcon(iconUrl);
@@ -393,7 +392,7 @@
learner.setPreferredSize(new Dimension(600, 520));
accept.setPreferredSize(new Dimension(290, 50));
advanced.setName("Advanced");
- posPanel = new PosAndNegSelectPanel(model, action, this);
+ posPanel = new PosAndNegSelectPanel(model, action);
addAcceptButtonListener(this.action);
addRunButtonListener(this.action);
addAdvancedButtonListener(this.action);
@@ -418,8 +417,7 @@
* Returns the Mainwindow where the Plugin is integratet.
* @return OWLClassDescriptionWithDLLearnerTab MainWindow
*/
- public OWLClassDescriptionEditorWithDLLearnerTab getMainWindow()
- {
+ public OWLClassDescriptionEditorWithDLLearnerTab getMainWindow() {
return mainWindow;
}
/**
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-15 11:15:18 UTC (rev 1379)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-15 11:21:49 UTC (rev 1380)
@@ -106,7 +106,7 @@
* @param act
* ActionHandler
*/
- public PosAndNegSelectPanel(DLLearnerModel model, ActionHandler act, OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView window) {
+ public PosAndNegSelectPanel(DLLearnerModel model, ActionHandler act) {
super();
pos = new JLabel("Positive Examples");
neg = new JLabel("Negative Examples");
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|
From: <hee...@us...> - 2008-10-15 11:15:27
|
Revision: 1379
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1379&view=rev
Author: heeroyuy
Date: 2008-10-15 11:15:18 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
-add new necessary libraries to run the protege plugin
Modified Paths:
--------------
trunk/lib/protege/org.protege.editor.core.application.jar
trunk/lib/protege/org.protege.editor.owl.jar
Modified: trunk/lib/protege/org.protege.editor.core.application.jar
===================================================================
(Binary files differ)
Modified: trunk/lib/protege/org.protege.editor.owl.jar
===================================================================
(Binary files differ)
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From: <hee...@us...> - 2008-10-15 11:14:37
|
Revision: 1378
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1378&view=rev
Author: heeroyuy
Date: 2008-10-15 11:14:27 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
-removed deprecated warning
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 10:12:15 UTC (rev 1377)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 11:14:27 UTC (rev 1378)
@@ -19,33 +19,51 @@
*/
package org.dllearner.tools.protege;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.net.URL;
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Set;
+
+import javax.swing.BorderFactory;
+import javax.swing.ImageIcon;
+import javax.swing.JButton;
+import javax.swing.JComboBox;
+import javax.swing.JComponent;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JSpinner;
+import javax.swing.JSplitPane;
+import javax.swing.JTabbedPane;
+import javax.swing.JTextArea;
+import javax.swing.JToggleButton;
+import javax.swing.SpinnerNumberModel;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+
import org.protege.editor.core.ui.util.ComponentFactory;
import org.protege.editor.core.ui.util.InputVerificationStatusChangedListener;
import org.protege.editor.core.ui.util.VerifiedInputEditor;
import org.protege.editor.owl.OWLEditorKit;
+import org.protege.editor.owl.model.cache.OWLExpressionUserCache;
+import org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor;
import org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor;
-import org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor;
-//import org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionChecker;
+import org.protege.editor.owl.ui.frame.OWLFrame;
import org.protege.editor.owl.ui.selector.OWLClassSelectorPanel;
import org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel;
+import org.semanticweb.owl.model.OWLClass;
import org.semanticweb.owl.model.OWLDataFactory;
import org.semanticweb.owl.model.OWLDescription;
import org.semanticweb.owl.model.OWLException;
-import org.semanticweb.owl.model.OWLClass;
import org.semanticweb.owl.model.OWLObjectProperty;
-import org.protege.editor.owl.ui.frame.*;
-
-import javax.swing.*;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-import java.awt.*;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.util.*;
-import java.util.List;
-import java.net.*;
-
/**
* Added a new Tab for the DL-Learner GUI.
*
@@ -214,10 +232,11 @@
*/
public OWLDescription getEditedObject() {
try {
+
if (editor.isWellFormed()) {
- String expression = editor.getText();
- return editorKit.getModelManager().getOWLDescriptionParser()
- .createOWLDescription(expression);
+ OWLDescription owlDescription = editor.createObject();
+ OWLExpressionUserCache.getInstance(editorKit.getModelManager()).add(owlDescription, editor.getText());
+ return owlDescription;
}
if (!dllearner.getSollutions().isEmpty()) {
return dllearner.getSollution();
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From: <hee...@us...> - 2008-10-15 10:12:21
|
Revision: 1377
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1377&view=rev
Author: heeroyuy
Date: 2008-10-15 10:12:15 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
-new images for the advanced button
-put helpmessages on a JOptionPane instead of an new JPanel
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerModel.java
trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/tools/protege/arrow.gif
trunk/src/dl-learner/org/dllearner/tools/protege/arrow2.gif
Removed Paths:
-------------
trunk/src/dl-learner/org/dllearner/tools/protege/pfeil.gif
trunk/src/dl-learner/org/dllearner/tools/protege/pfeil2.gif
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2008-10-15 09:10:58 UTC (rev 1376)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2008-10-15 10:12:15 UTC (rev 1377)
@@ -59,8 +59,6 @@
private EvaluatedDescription evaluatedDescription;
// This is the view of the DL-Learner tab.
private OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView view;
- private int counter;
- private EvaluatedDescription oldEvaluatedDescription;
/**
* This is the constructor for the action handler.
@@ -81,7 +79,6 @@
this.editorKit = editor;
this.view = view;
this.id = i;
- counter = 0;
this.model = m;
toggled = false;
@@ -92,8 +89,6 @@
* @param z ActionEvent
*/
public void actionPerformed(ActionEvent z) {
-
- System.out.println("Doppelklick?: "+ z);
if(z.getActionCommand().equals("comboBoxChanged")) {
view.getPosAndNegSelectPanel().setOptionSpinner();
}
@@ -240,7 +235,6 @@
*/
public void mouseClicked(MouseEvent m) {
EvaluatedDescription eDescription = null;
- oldEvaluatedDescription = evaluatedDescription;
String desc = view.getSuggestClassPanel().getSuggestList()
.getSelectedValue().toString();
if (model.getEvaluatedDescriptionList() != null) {
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerModel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerModel.java 2008-10-15 09:10:58 UTC (rev 1376)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerModel.java 2008-10-15 10:12:15 UTC (rev 1377)
@@ -763,7 +763,6 @@
// TODO Auto-generated catch block
e.printStackTrace();
}
-
}
/**
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 09:10:58 UTC (rev 1376)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 10:12:15 UTC (rev 1377)
@@ -102,7 +102,7 @@
//checker = new OWLDescriptionChecker(editorKit);
editor = new ExpressionEditor<OWLDescription>(editorKit, editorKit.getModelManager().getOWLExpressionCheckerFactory().getOWLDescriptionChecker());
editor.setExpressionObject(description);
- dllearner = new DLLearnerView(frame, label);
+ dllearner = new DLLearnerView(frame, label, this);
action = new ActionHandler(this.action, null, dllearner, null,
editorKit);
tabbedPane = new JTabbedPane();
@@ -279,7 +279,7 @@
public class DLLearnerView extends JPanel {
private static final long serialVersionUID = 624829578325729385L;
-
+ private OWLClassDescriptionEditorWithDLLearnerTab mainWindow;
// this is the Component which shows the view of the dllearner
private JComponent learner;
@@ -344,12 +344,13 @@
* @param current OWLFrame
* @param label String
*/
- public DLLearnerView(OWLFrame<OWLClass> current, String label) {
+ public DLLearnerView(OWLFrame<OWLClass> current, String label, OWLClassDescriptionEditorWithDLLearnerTab tab) {
classSelectorPanel = new OWLClassSelectorPanel(editorKit);
+ mainWindow = tab;
classSelectorPanel.firePropertyChange("test", false, true);
- URL iconUrl = this.getClass().getResource("pfeil.gif");
+ URL iconUrl = this.getClass().getResource("arrow.gif");
icon = new ImageIcon(iconUrl);
- URL toggledIconUrl = this.getClass().getResource("pfeil2.gif");
+ URL toggledIconUrl = this.getClass().getResource("arrow2.gif");
toggledIcon = new ImageIcon(toggledIconUrl);
model = new DLLearnerModel(editorKit, current, label, this);
sugPanel = new SuggestClassPanel();
@@ -393,8 +394,16 @@
public PosAndNegSelectPanel getPosAndNegSelectPanel() {
return posPanel;
}
-
+
/**
+ * Returns the Mainwindow where the Plugin is integratet.
+ * @return OWLClassDescriptionWithDLLearnerTab MainWindow
+ */
+ public OWLClassDescriptionEditorWithDLLearnerTab getMainWindow()
+ {
+ return mainWindow;
+ }
+ /**
* This Method renders the view of the plugin.
*/
public void makeView() {
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-15 09:10:58 UTC (rev 1376)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-15 10:12:15 UTC (rev 1377)
@@ -19,21 +19,18 @@
*/
package org.dllearner.tools.protege;
-import java.awt.Color;
import java.awt.Dimension;
import java.awt.FlowLayout;
import java.awt.GridLayout;
import javax.swing.JButton;
import javax.swing.JComboBox;
-import javax.swing.JDialog;
import javax.swing.JLabel;
+import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JSpinner;
-import javax.swing.JTextArea;
import javax.swing.SpinnerNumberModel;
-import javax.swing.WindowConstants;
/**
* This class is the Panel for the Check boxes where the positive and negative
@@ -92,11 +89,6 @@
// This is the Text area where the help message is displayed.
- private JTextArea help;
-
- // This is the frame that pops up when the help button is pressed.
-
- private JDialog assistPanel;
private JComboBox optionBox;
private JPanel optionBoxPanel;
private JPanel spinnerPanel;
@@ -105,8 +97,6 @@
private SpinnerNumberModel maxExecutionModel;
private JSpinner optionSpinner;
private ActionHandler action;
- private OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView view;
- private final Color colorBlack = Color.black;
/**
* This is the constructor for the Panel that shows the check boxes.
@@ -119,7 +109,6 @@
public PosAndNegSelectPanel(DLLearnerModel model, ActionHandler act, OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView window) {
super();
pos = new JLabel("Positive Examples");
- view = window;
neg = new JLabel("Negative Examples");
optionBoxPanel = new JPanel(new GridLayout(0, 1));
spinnerPanel = new JPanel(new GridLayout(0, 1));
@@ -300,28 +289,12 @@
*/
public void renderHelpMessage(String assistance) {
// renders scroll bar if necessary
- JScrollPane scrollHelp = new JScrollPane(
- JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED,
- JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- help = new JTextArea();
- assistPanel = new JDialog();
- // no writing in the help panel is allowed
- help.setEditable(false);
- assistPanel.setName("help");
- assistPanel.setSize(300, 100);
- // window will be disposed if the x or the ok button is pressed
- assistPanel.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
- assistPanel.setVisible(true);
- assistPanel.setResizable(false);
- // sets textcolor to black
- help.setForeground(colorBlack);
- help.setText("Help: " + assistance);
- scrollHelp.setViewportView(help);
- scrollHelp.setBounds(0, 0, 300, 100);
- assistPanel.add(scrollHelp);
- assistPanel.setLocationRelativeTo(view);
+ JOptionPane.showMessageDialog(null,
+ assistance,
+ "Help",
+ JOptionPane.WARNING_MESSAGE);
}
-
+
/**
* This method adds the Action listener to the help buttons.
*
Added: trunk/src/dl-learner/org/dllearner/tools/protege/arrow.gif
===================================================================
(Binary files differ)
Property changes on: trunk/src/dl-learner/org/dllearner/tools/protege/arrow.gif
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added: trunk/src/dl-learner/org/dllearner/tools/protege/arrow2.gif
===================================================================
(Binary files differ)
Property changes on: trunk/src/dl-learner/org/dllearner/tools/protege/arrow2.gif
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Deleted: trunk/src/dl-learner/org/dllearner/tools/protege/pfeil.gif
===================================================================
(Binary files differ)
Deleted: trunk/src/dl-learner/org/dllearner/tools/protege/pfeil2.gif
===================================================================
(Binary files differ)
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <hee...@us...> - 2008-10-15 09:11:31
|
Revision: 1376
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1376&view=rev
Author: heeroyuy
Date: 2008-10-15 09:10:58 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
-add double click listener
-add name of the concept to the detail panel
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java
trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassPanel.java
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2008-10-13 15:56:08 UTC (rev 1375)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java 2008-10-15 09:10:58 UTC (rev 1376)
@@ -93,7 +93,7 @@
*/
public void actionPerformed(ActionEvent z) {
-
+ System.out.println("Doppelklick?: "+ z);
if(z.getActionCommand().equals("comboBoxChanged")) {
view.getPosAndNegSelectPanel().setOptionSpinner();
}
@@ -257,22 +257,10 @@
}
}
- System.out.println("old: " + oldEvaluatedDescription);
- if (oldEvaluatedDescription != null) {
-
- if (oldEvaluatedDescription != evaluatedDescription) {
- counter = 0;
- }
- counter++;
- } else {
- counter++;
- }
- if (counter == 2) {
- counter = 0;
+ if(m.getClickCount()==2) {
view.getMoreDetailForSuggestedConceptsPanel().renderDetailPanel(
evaluatedDescription);
}
- System.out.println("Counter: " + counter);
}
/**
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java 2008-10-13 15:56:08 UTC (rev 1375)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/MoreDetailForSuggestedConceptsPanel.java 2008-10-15 09:10:58 UTC (rev 1376)
@@ -103,6 +103,8 @@
private EvaluatedDescription eval;
private final Color colorRed = Color.red;
+ private JTextArea concept;
+ private JTextArea conceptText;
private final Color colorGreen = Color.green;
/**
* This is the constructor for the Panel.
@@ -126,8 +128,11 @@
*/
public void renderDetailPanel(EvaluatedDescription desc) {
eval = desc;
+
accuracy = new JTextArea("Accuracy:");
accuracy.setEditable(false);
+ conceptText = new JTextArea();
+ conceptText.setEditable(false);
posCoveredText = new JTextArea();
posCoveredText.setForeground(colorGreen);
//sets covered positive examples text area not editable
@@ -151,6 +156,8 @@
examplePanel = new JPanel(new GridLayout(0, 2));
//this method adds the informations for the selected concept to the panel
setInformation();
+ concept = new JTextArea("Concept:");
+ concept.setEditable(false);
coveredPositiveExamples = new JLabel("Covered Positive Examples:");
coveredPositiveExamples.setForeground(colorGreen);
notCoveredPositiveExamples = new JLabel("Not Covered Positive Examples");
@@ -167,6 +174,8 @@
detailPopup.setResizable(false);
detailScroll = new JScrollPane(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
//adds all information to the example panel
+ examplePanel.add(concept);
+ examplePanel.add(conceptText);
examplePanel.add(accuracy);
examplePanel.add(accuracyText);
examplePanel.add(coveredPositiveExamples);
@@ -186,6 +195,7 @@
private void setInformation() {
if(eval!=null) {
//sets the accuracy of the selected concept
+ conceptText.append(eval.getDescription().toManchesterSyntaxString(model.getURI().toString()+"#",null));
double acc = (eval.getAccuracy())*100;
accuracyText.append(String.valueOf(acc)+"%");
//sets the positive examples that are covered
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-13 15:56:08 UTC (rev 1375)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/OWLClassDescriptionEditorWithDLLearnerTab.java 2008-10-15 09:10:58 UTC (rev 1376)
@@ -373,7 +373,7 @@
learner.setPreferredSize(new Dimension(600, 520));
accept.setPreferredSize(new Dimension(290, 50));
advanced.setName("Advanced");
- posPanel = new PosAndNegSelectPanel(model, action);
+ posPanel = new PosAndNegSelectPanel(model, action, this);
addAcceptButtonListener(this.action);
addRunButtonListener(this.action);
addAdvancedButtonListener(this.action);
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-13 15:56:08 UTC (rev 1375)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/PosAndNegSelectPanel.java 2008-10-15 09:10:58 UTC (rev 1376)
@@ -105,6 +105,7 @@
private SpinnerNumberModel maxExecutionModel;
private JSpinner optionSpinner;
private ActionHandler action;
+ private OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView view;
private final Color colorBlack = Color.black;
/**
@@ -115,9 +116,10 @@
* @param act
* ActionHandler
*/
- public PosAndNegSelectPanel(DLLearnerModel model, ActionHandler act) {
+ public PosAndNegSelectPanel(DLLearnerModel model, ActionHandler act, OWLClassDescriptionEditorWithDLLearnerTab.DLLearnerView window) {
super();
pos = new JLabel("Positive Examples");
+ view = window;
neg = new JLabel("Negative Examples");
optionBoxPanel = new JPanel(new GridLayout(0, 1));
spinnerPanel = new JPanel(new GridLayout(0, 1));
@@ -317,6 +319,7 @@
scrollHelp.setViewportView(help);
scrollHelp.setBounds(0, 0, 300, 100);
assistPanel.add(scrollHelp);
+ assistPanel.setLocationRelativeTo(view);
}
/**
Modified: trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassPanel.java 2008-10-13 15:56:08 UTC (rev 1375)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassPanel.java 2008-10-15 09:10:58 UTC (rev 1376)
@@ -95,11 +95,13 @@
}
/**
- * this method adds the suggest list to the Mouse Listener.
+ * This method adds the suggest list to the Mouse Listener.
* @param action ActionHandler
*/
public void addSuggestPanelMouseListener(ActionHandler action) {
descriptions.addMouseListener(action);
- }
+ }
+
+
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-10-13 15:56:23
|
Revision: 1375
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1375&view=rev
Author: jenslehmann
Date: 2008-10-13 15:56:08 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
added INSTALL and README to build, extended INSTALL
Modified Paths:
--------------
trunk/INSTALL
trunk/build.xml
Removed Paths:
-------------
trunk/examples/commandcollection.txt
Modified: trunk/INSTALL
===================================================================
--- trunk/INSTALL 2008-10-13 12:34:43 UTC (rev 1374)
+++ trunk/INSTALL 2008-10-13 15:56:08 UTC (rev 1375)
@@ -1,6 +1,6 @@
Requirements
============
-Java 6 and a reasoner is required.
+Java 6 is required. (All other libraries are included in the release.)
Installation
============
@@ -20,9 +20,12 @@
Run "dllearner.bat" followed by the name of the file to process, e.g.
"dllearner.bat examples/father.conf".
-All:
+As a convenience method, you can also run "quickstart". The script will present a
+numbered list of all examples found in the examples folder, where you can choose
+an examples. You can also call "gui" and load one of the conf files, change try
+differnt configuration options etc.
-You can use the "java" command to run the program directly. Have a look at
+Note: You can also use the "java" command to run the program directly. Have a look at
"dllearner" and "dllearner.bat" to see what the command looks like.
Web-Service
@@ -30,5 +33,14 @@
If you want to run DL-Learner as a Web Service, you can run the scripts "ws" or
"ws.bat". They create an own local webserver running DL-Learner. Some simple
-PHP example for using the web service are available at our SVN Repository:
+PHP examples for using the web service are available at our SVN Repository:
http://dl-learner.svn.sourceforge.net/viewvc/dl-learner/trunk/src/php-examples/
+
+
+Developers
+====================
+
+An example script on how to use DL-Learner is available in Java at
+src/dl-learner/org/dllearner/scripts/NewSample.java. Please drop us a note
+(mail: le...@in...) if you plan to use DL-Learner or
+have further questions.
Modified: trunk/build.xml
===================================================================
--- trunk/build.xml 2008-10-13 12:34:43 UTC (rev 1374)
+++ trunk/build.xml 2008-10-13 15:56:08 UTC (rev 1375)
@@ -154,6 +154,10 @@
</fileset>
</copy>
+ <!-- copy special files (INSTALL, README) -->
+ <copy file="INSTALL" toDir="${release_tmp_dir}" />
+ <copy file="README" toDir="${release_tmp_dir}" />
+
<!-- create tar.gz files (allows storing whether a file is executable) -->
<tar longfile="gnu" destfile="dllearner-nosource-${today}.tar.gz" compression="gzip">
<!-- extra set for executable files -->
Deleted: trunk/examples/commandcollection.txt
===================================================================
--- trunk/examples/commandcollection.txt 2008-10-13 12:34:43 UTC (rev 1374)
+++ trunk/examples/commandcollection.txt 2008-10-13 15:56:08 UTC (rev 1375)
@@ -1,72 +0,0 @@
-// just a collection of options for copy and paste
-// not complete !!!
-
-// control output
-showIndividuals = true;
-showConcepts = true;
-showRoles = true;
-showInternalKB = true;
-showSubsumptionHierarchy = true;
-
-// do not display http://localhost/foo# in concepts
-// and roles to make the output more readable
-hidePrefix("http://localhost/foo#");
-
-// reasoner settings
-reasoner = dig;
-reasoner = fastInstanceChecker;
-digReasonerURL = "http://localhost:8081";
-useRetrievalForClassification = true;
-refinement.useDIGMultiInstanceChecks = twoChecks;
-
-// algorithm settings
-algorithm = refinement;
-algorithm = refexamples;
-refinement.horizontalExpansionFactor = 0.6;
-refinement.quiet = false;
-refinement.useTooWeakList = true;
-refinement.heuristic = flexible;
-refinement.ignoredConcepts={"http://www.test.de/test#ONE"};
-refexamples.ignoredConcepts={"http://www.test.de/test#ONE"};
-percentPerLengthUnit = 0.05;
-
-//learning problems
-problem = posOnlyDefinition;
-
-// search tree protocol
-refinement.writeSearchTree = false;
-refinement.searchTreeFile = "log/SearchTree.txt";
-refinement.replaceSearchTree = false;
-
-
-//dig protocol
-writeDIGProtocol = true;
-digProtocolFile = "dig.log";
-
-//knowledgesources
-import("someFile.kb");
-import("someFile.owl");
-
-
-// SPARQL options
-sparql.recursionDepth = 1;
-
-//predefined filter (1 = YAGO based learning)
-sparql.predefinedFilter = 5;
-sparql.predefinedEndpoint = 1;
-
-//*********SKOS specific
-// replace skos with owl properties
-sparql.replacePredicate = [
-("http://www.w3.org/2004/02/skos/core#subject","http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
-("http://www.w3.org/2004/02/skos/core#broader","http://www.w3.org/2000/01/rdf-schema#subClassOf")];
-
-// because skos is cyclic this stops it
-//manually after retrieving the specified amount of classes
-sparql.breakSuperClassRetrievalAfter=200;
-
-
-import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
-sparql.instances = {};
-
-posNegDefinition.percentPerLengthUnit = 0.10;
\ No newline at end of file
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-10-13 12:34:53
|
Revision: 1374
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1374&view=rev
Author: jenslehmann
Date: 2008-10-13 12:34:43 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
added configurable Xmx value to build script
Modified Paths:
--------------
trunk/bin/dllearner
trunk/bin/dllearner.bat
trunk/bin/gui
trunk/bin/gui.bat
trunk/bin/quickstart
trunk/bin/quickstart.bat
trunk/bin/ws
trunk/bin/ws.bat
trunk/build.xml
Modified: trunk/bin/dllearner
===================================================================
--- trunk/bin/dllearner 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/dllearner 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1,2 @@
-java -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.cli.Start $@
\ No newline at end of file
+#!/bin/bash
+java -Xmx512m -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.cli.Start $@
\ No newline at end of file
Modified: trunk/bin/dllearner.bat
===================================================================
--- trunk/bin/dllearner.bat 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/dllearner.bat 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1 @@
-java -Xmx1024m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.Start %*
\ No newline at end of file
+java -Xmx512m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.Start %*
\ No newline at end of file
Modified: trunk/bin/gui
===================================================================
--- trunk/bin/gui 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/gui 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1,2 @@
-java -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.gui.StartGUI $@
\ No newline at end of file
+#!/bin/bash
+java -Xmx512m -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.gui.StartGUI $@
\ No newline at end of file
Modified: trunk/bin/gui.bat
===================================================================
--- trunk/bin/gui.bat 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/gui.bat 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1 @@
-java -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.gui.StartGUI %*
\ No newline at end of file
+java -Xmx512m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.gui.StartGUI %*
\ No newline at end of file
Modified: trunk/bin/quickstart
===================================================================
--- trunk/bin/quickstart 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/quickstart 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1,2 @@
-java -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
+#!/bin/bash
+java -Xmx512m -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
Modified: trunk/bin/quickstart.bat
===================================================================
--- trunk/bin/quickstart.bat 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/quickstart.bat 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1 @@
-java -Xmx1024m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
+java -Xmx512m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
Modified: trunk/bin/ws
===================================================================
--- trunk/bin/ws 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/ws 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1,2 @@
-java -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.server.DLLearnerWSStart $@
\ No newline at end of file
+#!/bin/bash
+java -Xmx512m -cp .:./lib/dig1.1-xmlbeans.jar:./lib/fact/FaCTpp-OWLAPI-v1.1.11.jar:./lib/jamon-2.7.jar:./lib/jena/antlr-2.7.5.jar:./lib/jena/arq.jar:./lib/jena/commons-logging-1.1.1.jar:./lib/jena/concurrent.jar:./lib/jena/icu4j_3_4.jar:./lib/jena/iri.jar:./lib/jena/jena.jar:./lib/jena/json.jar:./lib/jena/xercesImpl.jar:./lib/junit-4.4.jar:./lib/log4j.jar:./lib/mysql/mysql-connector-java-5.1.6-bin.jar:./lib/ore-tool/swingx-0.9.2.jar:./lib/owlapi/owlapi-bin.jar:./lib/pellet/aterm-java-1.6.jar:./lib/pellet/pellet.jar:./lib/pellet/relaxngDatatype.jar:./lib/pellet/xsdlib.jar:./lib/protege/org.protege.editor.core.application.jar:./lib/protege/org.protege.editor.owl.jar:./lib/xbean.jar:./lib/dllearner.jar org.dllearner.server.DLLearnerWSStart $@
\ No newline at end of file
Modified: trunk/bin/ws.bat
===================================================================
--- trunk/bin/ws.bat 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/bin/ws.bat 2008-10-13 12:34:43 UTC (rev 1374)
@@ -1 +1 @@
-java -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.server.DLLearnerWSStart %*
\ No newline at end of file
+java -Xmx512m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCTpp-OWLAPI-v1.1.11.jar;.\lib\jamon-2.7.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\mysql\mysql-connector-java-5.1.6-bin.jar;.\lib\ore-tool\swingx-0.9.2.jar;.\lib\owlapi\owlapi-bin.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\protege\org.protege.editor.core.application.jar;.\lib\protege\org.protege.editor.owl.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.server.DLLearnerWSStart %*
\ No newline at end of file
Modified: trunk/build.xml
===================================================================
--- trunk/build.xml 2008-10-13 11:58:54 UTC (rev 1373)
+++ trunk/build.xml 2008-10-13 12:34:43 UTC (rev 1374)
@@ -15,6 +15,10 @@
<property name="release_tmp_dir" value="release/${version_dir}" />
<property name="release_php_client_tmp_dir" value="release/php-client-${today}" />
+ <!-- other settings -->
+ <!-- maximum amount of allocated memory in startup scripts -->
+ <property name ="max_memory" value="512" />
+
<!-- set up classpath -->
<path id="classpath">
<pathelement location="."/>
@@ -257,14 +261,14 @@
<map from="${removeprefix}" to="."/>
</pathconvert>
- <echo file="bin/quickstart.bat" message="java -Xmx1024m -cp ${pathStringWin} org.dllearner.cli.QuickStart"/>
- <echo file="bin/dllearner.bat" message="java -Xmx1024m -cp ${pathStringWin} org.dllearner.cli.Start %*"/>
- <echo file="bin/ws.bat" message="java -cp ${pathStringWin} org.dllearner.server.DLLearnerWSStart %*"/>
- <echo file="bin/gui.bat" message="java -cp ${pathStringWin} org.dllearner.gui.StartGUI %*"/>
- <echo file="bin/quickstart" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
- <echo file="bin/dllearner" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
- <echo file="bin/ws" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
- <echo file="bin/gui" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
+ <echo file="bin/quickstart.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.cli.QuickStart"/>
+ <echo file="bin/dllearner.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.cli.Start %*"/>
+ <echo file="bin/ws.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.server.DLLearnerWSStart %*"/>
+ <echo file="bin/gui.bat" message="java -Xmx${max_memory}m -cp ${pathStringWin} org.dllearner.gui.StartGUI %*"/>
+ <echo file="bin/quickstart" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
+ <echo file="bin/dllearner" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
+ <echo file="bin/ws" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
+ <echo file="bin/gui" message="#!/bin/bash${line.separator}java -Xmx${max_memory}m -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
</target>
<!-- generate Javadoc -->
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|
|
From: <ku...@us...> - 2008-10-13 11:59:06
|
Revision: 1373
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1373&view=rev
Author: kurzum
Date: 2008-10-13 11:58:54 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
included bin/bash in scripts, for unix users with awesome and crazy shells like f1sh
Modified Paths:
--------------
trunk/build.xml
Modified: trunk/build.xml
===================================================================
--- trunk/build.xml 2008-10-13 11:39:11 UTC (rev 1372)
+++ trunk/build.xml 2008-10-13 11:58:54 UTC (rev 1373)
@@ -261,10 +261,10 @@
<echo file="bin/dllearner.bat" message="java -Xmx1024m -cp ${pathStringWin} org.dllearner.cli.Start %*"/>
<echo file="bin/ws.bat" message="java -cp ${pathStringWin} org.dllearner.server.DLLearnerWSStart %*"/>
<echo file="bin/gui.bat" message="java -cp ${pathStringWin} org.dllearner.gui.StartGUI %*"/>
- <echo file="bin/quickstart" message="java -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
- <echo file="bin/dllearner" message="java -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
- <echo file="bin/ws" message="java -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
- <echo file="bin/gui" message="java -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
+ <echo file="bin/quickstart" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.cli.QuickStart"/>
+ <echo file="bin/dllearner" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.cli.Start $@"/>
+ <echo file="bin/ws" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.server.DLLearnerWSStart $@"/>
+ <echo file="bin/gui" message="#!/bin/bash${line.separator}java -cp ${pathStringUnix} org.dllearner.gui.StartGUI $@"/>
</target>
<!-- generate Javadoc -->
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-10-13 11:39:18
|
Revision: 1372
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1372&view=rev
Author: kurzum
Date: 2008-10-13 11:39:11 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
deleted two double examples
Removed Paths:
-------------
trunk/examples/semantic_bible/normal_retrieval_special.conf
trunk/examples/semantic_bible/normal_test.conf
Deleted: trunk/examples/semantic_bible/normal_retrieval_special.conf
===================================================================
--- trunk/examples/semantic_bible/normal_retrieval_special.conf 2008-10-13 11:15:02 UTC (rev 1371)
+++ trunk/examples/semantic_bible/normal_retrieval_special.conf 2008-10-13 11:39:11 UTC (rev 1372)
@@ -1,32 +0,0 @@
- /**
-EXISTS "http://semanticbible.org/ns/2006/NTNames#siblingOf".TOP
-EXISTS "http://semanticbible.org/ns/2006/NTNames#siblingOf"."http://semanticbible.org/ns/2006/NTNames#Man"
- */
-
-
-// export("arch.owl");
-import("NTNcombined.owl");
-
-algorithm = refexamples;
-refexamples.useAllConstructor = false;
-refexamples.useNegation = false;
-refexamples.useCardinalityRestrictions = false;
-
-refexamples.guaranteeXgoodDescriptions = 20;
-//refexamples.ignoredConcepts = {"http://semanticbible.org/ns/2006/NTNames#God"};
-
-//reasoner = fastInstanceChecker;
-reasoner = owlAPIReasoner;
-owlAPIReasoner.reasonerType = pellet;
-
-problem = posNegDefinitionLP;
-posNegDefinitionLP.useRetrievalForClassficiation = false;
-
-/** examples **/
--"http://semanticbible.org/ns/2006/NTNames#Almighty"
--"http://semanticbible.org/ns/2006/NTNames#Gabriel"
--"http://semanticbible.org/ns/2006/NTNames#Michael"
-+"http://semanticbible.org/ns/2006/NTNames#Archelaus"
-+"http://semanticbible.org/ns/2006/NTNames#HerodAntipas"
--"http://semanticbible.org/ns/2006/NTNames#Satan"
--"http://semanticbible.org/ns/2006/NTNames#Jesus"
Deleted: trunk/examples/semantic_bible/normal_test.conf
===================================================================
--- trunk/examples/semantic_bible/normal_test.conf 2008-10-13 11:15:02 UTC (rev 1371)
+++ trunk/examples/semantic_bible/normal_test.conf 2008-10-13 11:39:11 UTC (rev 1372)
@@ -1,32 +0,0 @@
-import("NTNcombined.owl");
-
-algorithm = refexamples;
-refexamples.useAllConstructor = true;
-refexamples.useNegation = true;
-refexamples.useCardinalityRestrictions = true;
-refexamples.guaranteeXgoodDescriptions = 1;
-
-reasoner = owlAPIReasoner;
-owlAPIReasoner.reasonerType = pellet;
-
-/**
-(NOT "http://semanticbible.org/ns/2006/NTNames#FreshWaterArea" OR EXISTS "http://semanticbible.org/ns/2006/NTNames#collaboratesWith".(NOT "http://semanticbible.org/ns/2006/NTNames#EvilSupernaturalBeing" OR EXISTS "http://semanticbible.org/ns/2006/NTNames#ethnicity".TOP))
-((NOT http://semanticbible.org/ns/2006/NTNames#FreshWaterArea) OR EXISTS http://semanticbible.org/ns/2006/NTNames#collaboratesWith.((NOT http://semanticbible.org/ns/2006/NTNames#EvilSupernaturalBeing) OR EXISTS http://semanticbible.org/ns/2006/NTNames#ethnicity.TOP))(accuracy: 1.0)
-
-**/
-
-
-
-/**EXAMPLES**/
-+"http://semanticbible.org/ns/2006/NTNames#Agabus"
-+"http://semanticbible.org/ns/2006/NTNames#Apollos"
-+"http://semanticbible.org/ns/2006/NTNames#Barnabas"
-+"http://semanticbible.org/ns/2006/NTNames#Corinth"
-+"http://semanticbible.org/ns/2006/NTNames#Joanna"
-
--"http://semanticbible.org/ns/2006/NTNames#Lucius"
--"http://semanticbible.org/ns/2006/NTNames#Lydia"
--"http://semanticbible.org/ns/2006/NTNames#MattathaisSonOfAmos"
--"http://semanticbible.org/ns/2006/NTNames#Terah"
--"http://semanticbible.org/ns/2006/NTNames#TribeOfJoseph"
-
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|
|
From: <ku...@us...> - 2008-10-13 11:05:29
|
Revision: 1370
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1370&view=rev
Author: kurzum
Date: 2008-10-13 11:05:08 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
small changes fixed lymphography
Modified Paths:
--------------
trunk/examples/lymphography/lymphography_Class1.conf
trunk/examples/lymphography/lymphography_Class2.conf
trunk/examples/lymphography/lymphography_Class3.conf
trunk/examples/lymphography/lymphography_Class4.conf
trunk/examples/sparql/README.txt
trunk/examples/sparql/SKOSTEST_local.conf
trunk/examples/sparql/scrobble.conf
trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
Property Changed:
----------------
trunk/examples/sparql/
Modified: trunk/examples/lymphography/lymphography_Class1.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class1.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class1.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -17,16 +17,17 @@
*/
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
import("lymphography.owl");
/*Class1*/
Modified: trunk/examples/lymphography/lymphography_Class2.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class2.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class2.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -15,16 +15,18 @@
a new experimental version of the refinement algorithm)
*/
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
+refexamples.noisePercentage = 13.0;
import("lymphography.owl");
Modified: trunk/examples/lymphography/lymphography_Class3.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class3.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class3.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -17,16 +17,18 @@
*/
-refinement.ignoredConcepts = {
+algorithm = refexamples;
+refexamples.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
"http://www.example.org/lymphography#Target3_MalignLymph",
"http://www.example.org/lymphography#Target4_Fibrosis"
};
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
+refexamples.useAllConstructor = false;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
+refexamples.noisePercentage = 19.0;
import("lymphography.owl");
/*Class3*/
Modified: trunk/examples/lymphography/lymphography_Class4.conf
===================================================================
--- trunk/examples/lymphography/lymphography_Class4.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/lymphography/lymphography_Class4.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -15,6 +15,8 @@
a new experimental version of the refinement algorithm)
*/
+algorithm = refexamples;
+
refexamples.ignoredConcepts = {
"http://www.example.org/lymphography#Target1_NormalFind",
"http://www.example.org/lymphography#Target2_Metastases",
@@ -23,8 +25,8 @@
};
refexamples.useAllConstructor = false;
-refexamples.useExistsConstructor = false;
-refexamples.useNegation = true;
+refexamples.useExistsConstructor = true;
+refexamples.useNegation = false;
import("lymphography.owl");
Property changes on: trunk/examples/sparql
___________________________________________________________________
Added: svn:ignore
+ musicbrainz.conf
Modified: trunk/examples/sparql/README.txt
===================================================================
--- trunk/examples/sparql/README.txt 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/README.txt 2008-10-13 11:05:08 UTC (rev 1370)
@@ -3,3 +3,29 @@
When using the SPARQL component, files are written into the directory /cache to
avoid performing the same queries more than once.
+
+
+***predefined Filters
+all predefined filters remove references to hompage, etc during the extraction
+YAGO allows yago,
+SKOS allows skos,
+YAGOSKOS, allows yago and skos,
+YAGOONLY allows yago classes only, no skos , no umbel
+
+***predefined Endpoints
+List of values available for
+sparql.predefinedEndpoint("DBPEDIA"); (replace DBPEDIA)
+Most of them are not used in any examples, but are available.
+DBPEDIA the global DBpedia endpoint http://dbpedia.openlinksw.com:8890/sparql
+LOCALDBPEDIA a local mirror of DBpedia running at aksw.org http://139.18.2.37:8890/sparql
+LOCALJOSECKI a local joseki store, url pointing at "http://localhost:2020/books"
+LOCALJOSEKIBIBLE a local joseki store, url pointing at "http://localhost:2020/bible"
+GOVTRACK www.govtrack.us | sparql: http://www.rdfabout.com/sparql
+MUSICBRAINZ http://dbtune.org/musicbrainz/sparql
+SPARQLETTE
+SWCONFERENCE
+REVYU
+MYOPENLINK
+FACTBOOK
+DBLP
+
Modified: trunk/examples/sparql/SKOSTEST_local.conf
===================================================================
--- trunk/examples/sparql/SKOSTEST_local.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/SKOSTEST_local.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -1,16 +1,20 @@
/**
- * Some people from Greece.
+ * Some people which are/were Prime Ministers of the UK and some random negative Examples.
* Note: DBpedia is always subject to change, solutions will change over time
- * Possible Solution:
- * Theorist OR (Mathematician AND Physicist)
+ * Possible Solutions:
+
+1: (http://dbpedia.org/class/yago/PrimeMinistersOfTheUnitedKingdom OR EXISTS http://dbpedia.org/property/termStart.TOP) (length 5, depth 3)
+2: (http://dbpedia.org/class/yago/LeadersOfTheBritishConservativeParty OR EXISTS http://dbpedia.org/property/termStart.TOP) (length 5, depth 3)
+
*
*/
// SPARQL options
sparql.recursionDepth = 1;
-//predefined filter (1 = YAGO based learning)
+
+//for a list of predefined Filters and Endpoints see examples/sparql/README.txt
sparql.predefinedFilter = "YAGO";
sparql.predefinedEndpoint = "LOCALDBPEDIA";
@@ -65,4 +69,4 @@
+"http://dbpedia.org/resource/Anthony_Eden"
+"http://dbpedia.org/resource/Anthony_Eden_hat"
+"http://dbpedia.org/resource/Archibald_Primrose%2C_5th_Earl_of_Rosebery"
-+"http://dbpedia.org/resource/Arthur_Balfour"
\ No newline at end of file
++"http://dbpedia.org/resource/Arthur_Balfour"
Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/examples/sparql/scrobble.conf 2008-10-13 11:05:08 UTC (rev 1370)
@@ -18,6 +18,7 @@
sparql.recursionDepth = 3;
sparql.predefinedEndpoint = "MUSICBRAINZ";
+sparql.saveExtractedFragment = true;
algorithm = refexamples;
refexamples.useNegation = false;
Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-13 09:34:50 UTC (rev 1369)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-13 11:05:08 UTC (rev 1370)
@@ -90,7 +90,13 @@
}else if(tuple.b.isAnon()){
@SuppressWarnings("unused")
RDFBlankNode n = (RDFBlankNode) tuple.b;
- logger.warn("encountered Bnode in InstanceNode"+ this +"in tuple" + tuple);
+ if(tuple.a.toString().equals(OWLVocabulary.RDF_TYPE)){
+ logger.warn("blanknodes for instances not implemented yet (rare frequency). e.g. (instance rdf:type (A and B)"+" " + this+ " in tuple "+tuple);
+ }
+ else{
+ logger.warn("encountered Bnode in InstanceNode "+ this +" in tuple " + tuple);
+ logger.warn("In OWL-DL the subject of an object property assertion must be an instance (not a class). Triple will be ignored.");
+ }
return null;
// basically : if p is rdf:type then o is a class
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|
|
From: <jen...@us...> - 2008-10-13 09:35:56
|
Revision: 1369
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1369&view=rev
Author: jenslehmann
Date: 2008-10-13 09:34:50 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
beautification of some conf files
Modified Paths:
--------------
trunk/examples/semantic_bible/woman.conf
trunk/examples/sparql/DBPediaYAGOWomanInPolitics.conf
trunk/examples/sparql/hierarchy/Hierarchy0DBPediaYAGOChanBrit_monarch.conf
trunk/examples/sparql/hierarchy/Hierarchy1DBPediaYAGOChanBrit_pred_Knight.conf
trunk/examples/sparql/scrobble.conf
trunk/src/dl-learner/org/dllearner/Info.java
trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
Modified: trunk/examples/semantic_bible/woman.conf
===================================================================
--- trunk/examples/semantic_bible/woman.conf 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/examples/semantic_bible/woman.conf 2008-10-13 09:34:50 UTC (rev 1369)
@@ -1,8 +1,7 @@
- /**
+/**
+ * Women in Semantic Bible.
*/
-
-// export("arch.owl");
import("NTNcombined.owl");
algorithm = refexamples;
Modified: trunk/examples/sparql/DBPediaYAGOWomanInPolitics.conf
===================================================================
--- trunk/examples/sparql/DBPediaYAGOWomanInPolitics.conf 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/examples/sparql/DBPediaYAGOWomanInPolitics.conf 2008-10-13 09:34:50 UTC (rev 1369)
@@ -1,29 +1,19 @@
- /*
- * Some woman, that are Politicians
-
- Note: DBpedia is always subject to change, solutions will change over time
-
- Solution
- http://dbpedia.org/class/yago/Executive110069645 (length 1, depth 1)
- http://dbpedia.org/class/yago/CorporateExecutive109966255 (length 1, depth 1)
- http://dbpedia.org/class/yago/President110468559 (length 1, depth 1)
+/*
+ * Some woman, who are politicians.
+ *
+ * Note: DBpedia is always subject to change. Solutions will change over time.
+ *
+ * Solution:
+ * http://dbpedia.org/class/yago/Executive110069645
+ * http://dbpedia.org/class/yago/CorporateExecutive109966255
+ * http://dbpedia.org/class/yago/President110468559
*/
// SPARQL options
-
-
-
-// SPARQL options
-//necessary:
sparql.recursionDepth = 1;
-
-
-//predefined filter (1 = YAGO based learning)
-// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
sparql.predefinedFilter = "YAGO";
sparql.predefinedEndpoint = "DBPEDIA";
-
import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
sparql.instances = {
@@ -34,12 +24,10 @@
"http://dbpedia.org/resource/Angela_Merkel",
"http://dbpedia.org/resource/Christine_Todd_Whitman"};
-
-
/** examples **/
+"http://dbpedia.org/resource/Indira_Gandhi"
+"http://dbpedia.org/resource/Sonia_Gandhi"
-"http://dbpedia.org/resource/Hillary_Rodham_Clinton"
-"http://dbpedia.org/resource/Princess_Leia_Organa"
-"http://dbpedia.org/resource/Angela_Merkel"
--"http://dbpedia.org/resource/Christine_Todd_Whitman"
\ No newline at end of file
+-"http://dbpedia.org/resource/Christine_Todd_Whitman"
Modified: trunk/examples/sparql/hierarchy/Hierarchy0DBPediaYAGOChanBrit_monarch.conf
===================================================================
--- trunk/examples/sparql/hierarchy/Hierarchy0DBPediaYAGOChanBrit_monarch.conf 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/examples/sparql/hierarchy/Hierarchy0DBPediaYAGOChanBrit_monarch.conf 2008-10-13 09:34:50 UTC (rev 1369)
@@ -18,19 +18,12 @@
*/
-// SPARQL options
-
-
refinement.useAllConstructor = false;
//refinement.useExistsConstructor = true;
refinement.useNegation = false;
-// recursion depth of extraction algorithm
+// SPARQL options
sparql.recursionDepth = 1;
-
-
-//predefined filter (1 = YAGO based learning)
-// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
sparql.predefinedFilter = "YAGO";
sparql.predefinedEndpoint = "DBPEDIA";
@@ -48,14 +41,10 @@
};
-
-
-
/** examples **/
+"http://dbpedia.org/resource/Tony_Blair"
+"http://dbpedia.org/resource/Margaret_Thatcher"
+"http://dbpedia.org/resource/John_Major"
-
+"http://dbpedia.org/resource/James_Callaghan"
-"http://dbpedia.org/resource/Gerhard_Schr%C3%B6der"
Modified: trunk/examples/sparql/hierarchy/Hierarchy1DBPediaYAGOChanBrit_pred_Knight.conf
===================================================================
--- trunk/examples/sparql/hierarchy/Hierarchy1DBPediaYAGOChanBrit_pred_Knight.conf 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/examples/sparql/hierarchy/Hierarchy1DBPediaYAGOChanBrit_pred_Knight.conf 2008-10-13 09:34:50 UTC (rev 1369)
@@ -1,27 +1,5 @@
- /*
-Note: DBpedia is always subject to change, solutions will change over time
-
-
-
-
- */
-
// SPARQL options
-
-refinement.heuristic = flexible;
-
-refinement.useAllConstructor = false;
-//refinement.useExistsConstructor = true;
-refinement.useNegation = false;
-
-// SPARQL options
-//necessary:
-// recursion depth of extraction algorithm
sparql.recursionDepth = 1;
-
-
-//predefined filter (1 = YAGO based learning)
-// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
sparql.predefinedFilter = "YAGO";
sparql.predefinedEndpoint = "DBPEDIA";
@@ -32,7 +10,6 @@
,"http://dbpedia.org/resource/Margaret_Thatcher"
,"http://dbpedia.org/resource/John_Major"
-
,"http://dbpedia.org/resource/Harold_Macmillan"
,"http://dbpedia.org/resource/Alec_Douglas-Home"
,"http://dbpedia.org/resource/Liaquat_Ali_Khan"
@@ -43,14 +20,11 @@
};
-
-
/** examples **/
+"http://dbpedia.org/resource/Tony_Blair"
+"http://dbpedia.org/resource/Margaret_Thatcher"
+"http://dbpedia.org/resource/John_Major"
-
+"http://dbpedia.org/resource/Harold_Macmillan"
+"http://dbpedia.org/resource/Alec_Douglas-Home"
-"http://dbpedia.org/resource/Liaquat_Ali_Khan"
Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/examples/sparql/scrobble.conf 2008-10-13 09:34:50 UTC (rev 1369)
@@ -24,9 +24,9 @@
refexamples.useAllConstructor = false;
refexamples.useCardinalityRestrictions = false;
-refexamples.writeSearchTree = true;
-refexamples.searchTreeFile = "log/searchtree.txt";
-refexamples.replaceSearchTree = true;
+// refexamples.writeSearchTree = true;
+// refexamples.searchTreeFile = "log/searchtree.txt";
+// refexamples.replaceSearchTree = true;
reasoner = fastInstanceChecker;
Modified: trunk/src/dl-learner/org/dllearner/Info.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/Info.java 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/src/dl-learner/org/dllearner/Info.java 2008-10-13 09:34:50 UTC (rev 1369)
@@ -3,6 +3,6 @@
package org.dllearner;
public class Info {
- public static final String build = "2008-10-09";
+ public static final String build = "2008-10-13";
}
\ No newline at end of file
Modified: trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-11 13:35:40 UTC (rev 1368)
+++ trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-13 09:34:50 UTC (rev 1369)
@@ -89,17 +89,18 @@
// ignored due to errors (should be fixed; in case of long running problems or
// our of memory, it is better to increase the noise parameter and add comments
// in the conf file about "optimal" parameters)
+
+ // problems before latest release (kept to see if errors re-occurr,
+ // delete before next release)
// ignore.add("./examples/sparql/govtrack.conf"); // HTTP 500 Server error
- ignore.add("./examples/sparql/musicbrainz.conf"); // HTTP 502 error - NullPointer in extraction
//working fine here ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
- ignore.add("./examples/sparql/scrobble.conf"); // HTTP 502 Proxy Error
+ // ignore.add("./examples/sparql/scrobble.conf"); // HTTP 502 Proxy Error
// ignore.add("./examples/family-benchmark/Cousin.conf"); // Out of Memory Error => disallowing ALL helps (TODO find out details)
//also working fine ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
// ignore.add("./examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf"); // Pellet: literal cannot be cast to individual
// ignore.add("./examples/family-benchmark/Aunt.conf"); // did not terminate so far (waited 45 minutes) => disallowing ALL helps (TODO find out details)
// ignore.add("./examples/krk/KRK_ZERO_against_1to5_fastInstance.conf"); // Out of Memory Error
- //removed ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
-
+
int failedCounter = 0;
for (String path : confFiles.keySet()) {
for (String file : confFiles.get(path)) {
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-10-11 13:35:58
|
Revision: 1368
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1368&view=rev
Author: kurzum
Date: 2008-10-11 13:35:40 +0000 (Sat, 11 Oct 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/doc/configOptions.txt
trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf
trunk/examples/sparql/scrobble.conf
trunk/examples/sparql/scrobble.kb
trunk/src/dl-learner/org/dllearner/kb/extraction/ClassNode.java
trunk/src/dl-learner/org/dllearner/kb/extraction/Node.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
Modified: trunk/doc/configOptions.txt
===================================================================
--- trunk/doc/configOptions.txt 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/doc/configOptions.txt 2008-10-11 13:35:40 UTC (rev 1368)
@@ -7,44 +7,56 @@
component: KB file (org.dllearner.kb.KBFile)
============================================
-CLI usage: import = ;
+CLI usage: null = null;
-option name: filename
-description: pointer to the KB file on local file system
-values: class org.dllearner.core.config.StringConfigOption
-default value: null
-CLI usage: .filename = null;
-
option name: url
description: URL pointer to the KB file
-values: class org.dllearner.core.config.StringConfigOption
+values: class org.dllearner.core.config.URLConfigOption
default value: null
-CLI usage: .url = null;
+CLI usage: null.url = null;
+component: OWL API Ontology (org.dllearner.kb.OWLAPIOntology)
+=============================================================
+
+CLI usage: null = null;
+
+
component: OWL file (org.dllearner.kb.OWLFile)
==============================================
-CLI usage: import = ;
+CLI usage: null = owlfile;
option name: url
description: URL pointing to the OWL file
-values: class org.dllearner.core.config.StringConfigOption
+values: class org.dllearner.core.config.URLConfigOption
default value: null
-CLI usage: .url = null;
+CLI usage: owlfile.url = null;
component: SPARQL Endpoint (org.dllearner.kb.sparql.SparqlKnowledgeSource)
==========================================================================
-CLI usage: import = sparql;
+CLI usage: null = sparql;
option name: url
description: URL of SPARQL Endpoint
-values: class org.dllearner.core.config.StringConfigOption
+values: class org.dllearner.core.config.URLConfigOption
default value: null
CLI usage: sparql.url = null;
+option name: cacheDir
+description: dir of cache
+values: class org.dllearner.core.config.StringConfigOption
+default value: cache
+CLI usage: sparql.cacheDir = cache;
+
+option name: useCache
+description: If true a Cache is used
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: sparql.useCache = true;
+
option name: instances
description: relevant instances e.g. positive and negative examples in a learning problem
values: class org.dllearner.core.config.StringSetConfigOption
@@ -54,123 +66,99 @@
option name: recursionDepth
description: recursion depth of KB fragment selection
values: class org.dllearner.core.config.IntegerConfigOption
-default value: 2
-CLI usage: sparql.recursionDepth = 2;
+default value: 1
+CLI usage: sparql.recursionDepth = 1;
option name: predefinedFilter
-description: the mode of the SPARQL Filter
-values: class org.dllearner.core.config.IntegerConfigOption
+description: the mode of the SPARQL Filter, use one of YAGO,SKOS,YAGOSKOS , YAGOSPECIALHIERARCHY, TEST
+values: class org.dllearner.core.config.StringConfigOption
default value: null
CLI usage: sparql.predefinedFilter = null;
option name: predefinedEndpoint
-description: the mode of the SPARQL Filter
-values: class org.dllearner.core.config.IntegerConfigOption
+description: the mode of the SPARQL Filter, use one of DBPEDIA, LOCAL, GOVTRACK, REVYU, MYOPENLINK, FACTBOOK
+values: class org.dllearner.core.config.StringConfigOption
default value: null
CLI usage: sparql.predefinedEndpoint = null;
+option name: predefinedManipulator
+description: the mode of the Manipulator, use one of STANDARD, DBPEDIA-NAVIGATOR
+values: class org.dllearner.core.config.StringConfigOption
+default value: null
+CLI usage: sparql.predefinedManipulator = null;
+
option name: predList
description: list of all ignored roles
values: class org.dllearner.core.config.StringSetConfigOption
-default value: null
-CLI usage: sparql.predList = null;
+default value: []
+CLI usage: sparql.predList = [];
option name: objList
description: list of all ignored objects
values: class org.dllearner.core.config.StringSetConfigOption
-default value: null
-CLI usage: sparql.objList = null;
+default value: []
+CLI usage: sparql.objList = [];
-option name: classList
-description: list of all ignored classes
-values: class org.dllearner.core.config.StringSetConfigOption
-default value: null
-CLI usage: sparql.classList = null;
-
-option name: format
-description: N-TRIPLES or KB format
-values: class org.dllearner.core.config.StringConfigOption
-default value: N-TRIPLES
-CLI usage: sparql.format = N-TRIPLES;
-
-option name: dumpToFile
-description: Specifies whether the extracted ontology is written to a file or not.
+option name: saveExtractedFragment
+description: Specifies whether the extracted ontology is written to a file or not. The OWL file is written to the cache dir.Some DBpedia URI will make the XML invalid
values: class org.dllearner.core.config.BooleanConfigOption
default value: true
-CLI usage: sparql.dumpToFile = true;
+CLI usage: sparql.saveExtractedFragment = true;
-option name: useLits
-description: use Literals in SPARQL query
-values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: sparql.useLits = null;
-
-option name: getAllSuperClasses
-description: If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.
-values: class org.dllearner.core.config.BooleanConfigOption
-default value: true
-CLI usage: sparql.getAllSuperClasses = true;
-
-option name: learnDomain
-description: learns the Domain for a Role
-values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: sparql.learnDomain = null;
-
-option name: learnRange
-description: learns the Range for a Role
-values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: sparql.learnRange = null;
-
-option name: role
-description: role to learn Domain/Range from
-values: class org.dllearner.core.config.StringConfigOption
-default value: null
-CLI usage: sparql.role = null;
-
-option name: blankNodeIdentifier
-description: used to identify blanknodes in Tripels
-values: class org.dllearner.core.config.StringConfigOption
-default value: null
-CLI usage: sparql.blankNodeIdentifier = null;
-
-option name: example
-description: example
-values: class org.dllearner.core.config.StringTupleListConfigOption
-default value: null
-CLI usage: sparql.example = null;
-
option name: replacePredicate
description: rule for replacing predicates
values: class org.dllearner.core.config.StringTupleListConfigOption
-default value: null
-CLI usage: sparql.replacePredicate = null;
+default value: []
+CLI usage: sparql.replacePredicate = [];
option name: replaceObject
description: rule for replacing predicates
values: class org.dllearner.core.config.StringTupleListConfigOption
-default value: null
-CLI usage: sparql.replaceObject = null;
+default value: []
+CLI usage: sparql.replaceObject = [];
option name: breakSuperClassRetrievalAfter
description: stops a cyclic hierarchy after specified number of classes
values: class org.dllearner.core.config.IntegerConfigOption
-default value: null
-CLI usage: sparql.breakSuperClassRetrievalAfter = null;
+default value: 1000
+CLI usage: sparql.breakSuperClassRetrievalAfter = 1000;
-option name: numberOfInstancesUsedForRoleLearning
-description:
-values: class org.dllearner.core.config.IntegerConfigOption
-default value: null
-CLI usage: sparql.numberOfInstancesUsedForRoleLearning = null;
+option name: useLits
+description: use Literals in SPARQL query
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: sparql.useLits = true;
+option name: getAllSuperClasses
+description: If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: sparql.getAllSuperClasses = true;
+
option name: closeAfterRecursion
description: gets all classes for all instances
values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: sparql.closeAfterRecursion = null;
+default value: true
+CLI usage: sparql.closeAfterRecursion = true;
+option name: getPropertyInformation
+description: gets all types for extracted ObjectProperties
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: sparql.getPropertyInformation = false;
+
+option name: dissolveBlankNodes
+description: determines whether Blanknodes are dissolved. This is a costly function.
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: sparql.dissolveBlankNodes = true;
+
+option name: useImprovedSparqlTupelAquisitor
+description: uses deeply nested SparqlQueries, according to recursion depth, still EXPERIMENTAL
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: sparql.useImprovedSparqlTupelAquisitor = false;
+
option name: verbosity
description: control verbosity of output for this component
values: class org.dllearner.core.config.StringConfigOption
@@ -180,14 +168,14 @@
option name: defaultGraphURIs
description: a list of all default Graph URIs
values: class org.dllearner.core.config.StringSetConfigOption
-default value: null
-CLI usage: sparql.defaultGraphURIs = null;
+default value: []
+CLI usage: sparql.defaultGraphURIs = [];
option name: namedGraphURIs
description: a list of all named Graph URIs
values: class org.dllearner.core.config.StringSetConfigOption
-default value: null
-CLI usage: sparql.namedGraphURIs = null;
+default value: []
+CLI usage: sparql.namedGraphURIs = [];
*************
@@ -197,7 +185,7 @@
component: DIG reasoner (org.dllearner.reasoning.DIGReasoner)
=============================================================
-CLI usage: reasoner = digReasoner;
+CLI usage: null = digReasoner;
option name: reasonerUrl
description: URL of the DIG reasoner
@@ -221,7 +209,7 @@
component: fast instance checker (org.dllearner.reasoning.FastInstanceChecker)
==============================================================================
-CLI usage: reasoner = fastInstanceChecker;
+CLI usage: null = fastInstanceChecker;
option name: reasonerType
description: FaCT++ or Pellet to dematerialize
@@ -229,20 +217,26 @@
default value: pellet
CLI usage: fastInstanceChecker.reasonerType = pellet;
+option name: defaultNegation
+description: Whether to use default negation, i.e. an instance not being in a class means that it is in the negation of the class.
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: fastInstanceChecker.defaultNegation = true;
+
component: fast retrieval reasoner (org.dllearner.reasoning.FastRetrievalReasoner)
==================================================================================
-CLI usage: reasoner = fastRetrieval;
+CLI usage: null = fastRetrievalReasoner;
component: OWL API reasoner (org.dllearner.reasoning.OWLAPIReasoner)
====================================================================
-CLI usage: reasoner = owlAPIReasoner;
+CLI usage: null = owlAPIReasoner;
option name: reasonerType
-description: FaCT++ or Pellet
+description: FaCT++ or Pellet, which means "pellet" or "fact"
values: class org.dllearner.core.config.StringConfigOption
default value: pellet
CLI usage: owlAPIReasoner.reasonerType = pellet;
@@ -255,7 +249,7 @@
component: two valued definition learning problem (org.dllearner.learningproblems.PosNegDefinitionLP)
=====================================================================================================
-CLI usage: problem = posNegDefinitionLP;
+CLI usage: null = posNegDefinitionLP;
option name: positiveExamples
description: positive examples
@@ -272,8 +266,8 @@
option name: useRetrievalForClassficiation
description: Specifies whether to use retrieval or instance checks for testing a concept.
values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: posNegDefinitionLP.useRetrievalForClassficiation = null;
+default value: false
+CLI usage: posNegDefinitionLP.useRetrievalForClassficiation = false;
option name: percentPerLenghtUnit
description: describes the reduction in classification accuracy in percent one is willing to accept for reducing the length of the concept by one
@@ -284,15 +278,69 @@
option name: useMultiInstanceChecks
description: See UseMultiInstanceChecks enum.
values: class org.dllearner.core.config.StringConfigOption
+default value: twoChecks
+CLI usage: posNegDefinitionLP.useMultiInstanceChecks = twoChecks;
+
+
+component: three valued definition learning problem (org.dllearner.learningproblems.PosNegDefinitionLPStrict)
+=============================================================================================================
+
+CLI usage: null = null;
+
+option name: positiveExamples
+description: positive examples
+values: class org.dllearner.core.config.StringSetConfigOption
default value: null
-CLI usage: posNegDefinitionLP.useMultiInstanceChecks = null;
+CLI usage: null.positiveExamples = null;
+option name: negativeExamples
+description: negative examples
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: null.negativeExamples = null;
-component: inclusion learning problem (org.dllearner.learningproblems.PosNegInclusionLP)
-========================================================================================
+option name: useRetrievalForClassficiation
+description: Specifies whether to use retrieval or instance checks for testing a concept.
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: null.useRetrievalForClassficiation = false;
-CLI usage: problem = posNegInclusionLP;
+option name: percentPerLenghtUnit
+description: describes the reduction in classification accuracy in percent one is willing to accept for reducing the length of the concept by one
+values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
+default value: 0.05
+CLI usage: null.percentPerLenghtUnit = 0.05;
+option name: useMultiInstanceChecks
+description: See UseMultiInstanceChecks enum.
+values: class org.dllearner.core.config.StringConfigOption
+default value: twoChecks
+CLI usage: null.useMultiInstanceChecks = twoChecks;
+
+option name: penaliseNeutralExamples
+description: if set to true neutral examples are penalised
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: null
+CLI usage: null.penaliseNeutralExamples = null;
+
+option name: accuracyPenalty
+description: penalty for pos/neg examples which are classified as neutral
+values: class org.dllearner.core.config.DoubleConfigOption
+default value: 1.0
+CLI usage: null.accuracyPenalty = 1.0;
+
+option name: errorPenalty
+description: penalty for pos. examples classified as negative or vice versa
+values: class org.dllearner.core.config.DoubleConfigOption
+default value: 3.0
+CLI usage: null.errorPenalty = 3.0;
+
+
+component: two valued inclusion learning problem (org.dllearner.learningproblems.PosNegInclusionLP)
+===================================================================================================
+
+CLI usage: null = posNegInclusionLP;
+
option name: positiveExamples
description: positive examples
values: class org.dllearner.core.config.StringSetConfigOption
@@ -308,8 +356,8 @@
option name: useRetrievalForClassficiation
description: Specifies whether to use retrieval or instance checks for testing a concept.
values: class org.dllearner.core.config.BooleanConfigOption
-default value: null
-CLI usage: posNegInclusionLP.useRetrievalForClassficiation = null;
+default value: false
+CLI usage: posNegInclusionLP.useRetrievalForClassficiation = false;
option name: percentPerLenghtUnit
description: describes the reduction in classification accuracy in percent one is willing to accept for reducing the length of the concept by one
@@ -320,14 +368,14 @@
option name: useMultiInstanceChecks
description: See UseMultiInstanceChecks enum.
values: class org.dllearner.core.config.StringConfigOption
-default value: null
-CLI usage: posNegInclusionLP.useMultiInstanceChecks = null;
+default value: twoChecks
+CLI usage: posNegInclusionLP.useMultiInstanceChecks = twoChecks;
component: positive only definition learning problem (org.dllearner.learningproblems.PosOnlyDefinitionLP)
=========================================================================================================
-CLI usage: problem = posOnlyDefinitionLP;
+CLI usage: null = posOnlyDefinitionLP;
option name: positiveExamples
description: positive examples
@@ -336,6 +384,18 @@
CLI usage: posOnlyDefinitionLP.positiveExamples = null;
+component: pos only inclusion learning problem (org.dllearner.learningproblems.PosOnlyInclusionLP)
+==================================================================================================
+
+CLI usage: null = null;
+
+option name: positiveExamples
+description: positive examples
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: null.positiveExamples = null;
+
+
***********************
* Learning Algorithms *
***********************
@@ -343,13 +403,13 @@
component: brute force learning algorithm (org.dllearner.algorithms.BruteForceLearner)
======================================================================================
-CLI usage: algorithm = bruteForce;
+CLI usage: null = bruteForce;
option name: maxLength
description: maximum length of generated concepts
values: class org.dllearner.core.config.IntegerConfigOption
-default value: null
-CLI usage: bruteForce.maxLength = null;
+default value: 7
+CLI usage: bruteForce.maxLength = 7;
option name: returnType
description: Specifies the type which the solution has to belong to (if already) known. This means we inform the learning algorithm that the solution is a subclass of this type.
@@ -358,28 +418,214 @@
CLI usage: bruteForce.returnType = null;
+component: DBpedia Navigation Suggestor (org.dllearner.algorithms.DBpediaNavigationSuggestor)
+=============================================================================================
+
+CLI usage: null = dbpediaNavigationSuggestor;
+
+option name: writeSearchTree
+description: specifies whether to write a search tree
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: dbpediaNavigationSuggestor.writeSearchTree = false;
+
+option name: searchTreeFile
+description: file to use for the search tree
+values: class org.dllearner.core.config.StringConfigOption
+default value: log/searchTree.txt
+CLI usage: dbpediaNavigationSuggestor.searchTreeFile = log/searchTree.txt;
+
+option name: replaceSearchTree
+description: specifies whether to replace the search tree in the log file after each run or append the new search tree
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: dbpediaNavigationSuggestor.replaceSearchTree = false;
+
+option name: heuristic
+description: specifiy the heuristic to use
+values: class org.dllearner.core.config.StringConfigOption
+default value: lexicographic
+CLI usage: dbpediaNavigationSuggestor.heuristic = lexicographic;
+
+option name: applyAllFilter
+description: usage of equivalence ALL R.C AND ALL R.D = ALL R.(C AND D)
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.applyAllFilter = true;
+
+option name: applyExistsFilter
+description: usage of equivalence EXISTS R.C OR EXISTS R.D = EXISTS R.(C OR D)
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.applyExistsFilter = true;
+
+option name: useTooWeakList
+description: try to filter out too weak concepts without sending them to the reasoner
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useTooWeakList = true;
+
+option name: useOverlyGeneralList
+description: try to find overly general concept without sending them to the reasoner
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useOverlyGeneralList = true;
+
+option name: useShortConceptConstruction
+description: shorten concept to see whether they already exist
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useShortConceptConstruction = true;
+
+option name: horizontalExpansionFactor
+description: horizontal expansion factor (see publication for description)
+values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
+default value: 0.6
+CLI usage: dbpediaNavigationSuggestor.horizontalExpansionFactor = 0.6;
+
+option name: improveSubsumptionHierarchy
+description: simplify subsumption hierarchy to reduce search space (see publication for description)
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.improveSubsumptionHierarchy = true;
+
+option name: allowedConcepts
+description: concepts the algorithm is allowed to use
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.allowedConcepts = null;
+
+option name: ignoredConcepts
+description: concepts the algorithm must ignore
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.ignoredConcepts = null;
+
+option name: allowedRoles
+description: roles the algorithm is allowed to use
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.allowedRoles = null;
+
+option name: ignoredRoles
+description: roles the algorithm must ignore
+values: class org.dllearner.core.config.StringSetConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.ignoredRoles = null;
+
+option name: useAllConstructor
+description: specifies whether the universal concept constructor is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useAllConstructor = true;
+
+option name: useExistsConstructor
+description: specifies whether the existential concept constructor is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useExistsConstructor = true;
+
+option name: useCardinalityRestrictions
+description: specifies whether CardinalityRestrictions is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useCardinalityRestrictions = true;
+
+option name: useHasValueConstructor
+description: specifies whether the hasValue constructor is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: dbpediaNavigationSuggestor.useHasValueConstructor = false;
+
+option name: valueFrequencyThreshold
+description: specifies how often an object must occur as value in order to be considered for hasValue restrictions
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 3
+CLI usage: dbpediaNavigationSuggestor.valueFrequencyThreshold = 3;
+
+option name: useNegation
+description: specifies whether negation is used in the learning algorothm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useNegation = true;
+
+option name: useBooleanDatatypes
+description: specifies whether boolean datatypes are used in the learning algorothm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: dbpediaNavigationSuggestor.useBooleanDatatypes = true;
+
+option name: maxExecutionTimeInSeconds
+description: algorithm will stop after specified seconds
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 0
+CLI usage: dbpediaNavigationSuggestor.maxExecutionTimeInSeconds = 0;
+
+option name: minExecutionTimeInSeconds
+description: algorithm will run at least specified seconds
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 0
+CLI usage: dbpediaNavigationSuggestor.minExecutionTimeInSeconds = 0;
+
+option name: guaranteeXgoodDescriptions
+description: algorithm will run until X good (100%) concept descritpions are found
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 1
+CLI usage: dbpediaNavigationSuggestor.guaranteeXgoodDescriptions = 1;
+
+option name: logLevel
+description: determines the logLevel for this component, can be {TRACE, DEBUG, INFO}
+values: class org.dllearner.core.config.StringConfigOption
+default value: DEBUG
+CLI usage: dbpediaNavigationSuggestor.logLevel = DEBUG;
+
+option name: noisePercentage
+description: the (approximated) percentage of noise within the examples
+values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 100.0
+default value: 0.0
+CLI usage: dbpediaNavigationSuggestor.noisePercentage = 0.0;
+
+option name: startClass
+description: the named class which should be used to start the algorithm (GUI: needs a widget for selecting a class)
+values: class org.dllearner.core.config.StringConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.startClass = null;
+
+option name: forceRefinementLengthIncrease
+description: specifies whether nodes should be expanded until only longer refinements are reached
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: null
+CLI usage: dbpediaNavigationSuggestor.forceRefinementLengthIncrease = null;
+
+
component: random guesser learning algorithm (org.dllearner.algorithms.RandomGuesser)
=====================================================================================
-CLI usage: algorithm = random;
+CLI usage: null = random;
option name: numberOfTrees
description: number of randomly generated concepts/trees
values: class org.dllearner.core.config.IntegerConfigOption
-default value: null
-CLI usage: random.numberOfTrees = null;
+default value: 5
+CLI usage: random.numberOfTrees = 5;
option name: maxDepth
description: maximum depth of generated concepts/trees
values: class org.dllearner.core.config.IntegerConfigOption
-default value: null
-CLI usage: random.maxDepth = null;
+default value: 5
+CLI usage: random.maxDepth = 5;
+component: simple suggestion algorithm (org.dllearner.algorithms.SimpleSuggestionLearningAlgorithm)
+===================================================================================================
+
+CLI usage: null = null;
+
+
component: genetic programming learning algorithm (org.dllearner.algorithms.gp.GP)
==================================================================================
-CLI usage: algorithm = gp;
+CLI usage: null = gp;
option name: selectionType
description: selection type
@@ -399,29 +645,35 @@
default value: true
CLI usage: gp.elitism = true;
-option name: mutationProbablitiy
+option name: algorithmType
+description: algorithm type
+values: class org.dllearner.core.config.StringConfigOption
+default value: steadyState
+CLI usage: gp.algorithmType = steadyState;
+
+option name: mutationProbability
description: mutation probability
values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
default value: 0.03
-CLI usage: gp.mutationProbablitiy = 0.03;
+CLI usage: gp.mutationProbability = 0.03;
-option name: crossoverProbablitiy
+option name: crossoverProbability
description: crossover probability
values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
default value: 0.95
-CLI usage: gp.crossoverProbablitiy = 0.95;
+CLI usage: gp.crossoverProbability = 0.95;
-option name: hillClimbingProbablitiy
+option name: hillClimbingProbability
description: hill climbing probability
values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
default value: 0.0
-CLI usage: gp.hillClimbingProbablitiy = 0.0;
+CLI usage: gp.hillClimbingProbability = 0.0;
-option name: refinementProbablitiy
+option name: refinementProbability
description: refinement operator probability (values higher than 0 turn this into a hybrid GP algorithm - see publication)
values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
default value: 0.0
-CLI usage: gp.refinementProbablitiy = 0.0;
+CLI usage: gp.refinementProbability = 0.0;
option name: numberOfIndividuals
description: number of individuals
@@ -481,7 +733,7 @@
component: example driven refinement operator based learning algorithm (org.dllearner.algorithms.refexamples.ExampleBasedROLComponent)
======================================================================================================================================
-CLI usage: algorithm = refexamples;
+CLI usage: null = refexamples;
option name: writeSearchTree
description: specifies whether to write a search tree
@@ -585,6 +837,18 @@
default value: true
CLI usage: refexamples.useExistsConstructor = true;
+option name: useHasValueConstructor
+description: specifies whether the hasValue constructor is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: refexamples.useHasValueConstructor = false;
+
+option name: valueFrequencyThreshold
+description: specifies how often an object must occur as value in order to be considered for hasValue restrictions
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 3
+CLI usage: refexamples.valueFrequencyThreshold = 3;
+
option name: useCardinalityRestrictions
description: specifies whether CardinalityRestrictions is used in the learning algorithm
values: class org.dllearner.core.config.BooleanConfigOption
@@ -603,6 +867,12 @@
default value: true
CLI usage: refexamples.useBooleanDatatypes = true;
+option name: useDoubleDatatypes
+description: specifies whether boolean datatypes are used in the learning algorothm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: refexamples.useDoubleDatatypes = true;
+
option name: maxExecutionTimeInSeconds
description: algorithm will stop after specified seconds
values: class org.dllearner.core.config.IntegerConfigOption
@@ -621,17 +891,35 @@
default value: 1
CLI usage: refexamples.guaranteeXgoodDescriptions = 1;
+option name: maxClassDescriptionTests
+description: The maximum number of candidate hypothesis the algorithm is allowed to test (0 = no limit). The algorithm will stop afterwards. (The real number of tests can be slightly higher, because this criterion usually won't be checked after each single test.)
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 0
+CLI usage: refexamples.maxClassDescriptionTests = 0;
+
option name: logLevel
description: determines the logLevel for this component, can be {TRACE, DEBUG, INFO}
values: class org.dllearner.core.config.StringConfigOption
default value: DEBUG
CLI usage: refexamples.logLevel = DEBUG;
+option name: usePropernessChecks
+description: specifies whether to check for equivalence (i.e. discard equivalent refinements)
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: false
+CLI usage: refexamples.usePropernessChecks = false;
+
+option name: maxPosOnlyExpansion
+description: specifies how often a node in the search tree of a posonly learning problem needs to be expanded before it is considered as solution candidate
+values: class org.dllearner.core.config.IntegerConfigOption
+default value: 4
+CLI usage: refexamples.maxPosOnlyExpansion = 4;
+
option name: noisePercentage
description: the (approximated) percentage of noise within the examples
values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 100.0
-default value: null
-CLI usage: refexamples.noisePercentage = null;
+default value: 0.0
+CLI usage: refexamples.noisePercentage = 0.0;
option name: startClass
description: the named class which should be used to start the algorithm (GUI: needs a widget for selecting a class)
@@ -639,11 +927,17 @@
default value: null
CLI usage: refexamples.startClass = null;
+option name: forceRefinementLengthIncrease
+description: specifies whether nodes should be expanded until only longer refinements are reached
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: null
+CLI usage: refexamples.forceRefinementLengthIncrease = null;
+
component: refinement operator based learning algorithm (org.dllearner.algorithms.refinement.ROLearner)
=======================================================================================================
-CLI usage: algorithm = refinement;
+CLI usage: null = refinement;
option name: writeSearchTree
description: specifies whether to write a search tree
@@ -759,6 +1053,12 @@
default value: true
CLI usage: refinement.useNegation = true;
+option name: useCardinalityRestrictions
+description: specifies whether CardinalityRestrictions is used in the learning algorithm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: true
+CLI usage: refinement.useCardinalityRestrictions = true;
+
option name: useBooleanDatatypes
description: specifies whether boolean datatypes are used in the learning algorothm
values: class org.dllearner.core.config.BooleanConfigOption
Modified: trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf
===================================================================
--- trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf 2008-10-11 13:35:40 UTC (rev 1368)
@@ -87,6 +87,6 @@
/** examples **/
-+"http://dbpedia.org/resource/Helmut_Kohl"
--"http://dbpedia.org/resource/Angela_Merkel"
+-"http://dbpedia.org/resource/Helmut_Kohl"
++"http://dbpedia.org/resource/Angela_Merkel"
Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/examples/sparql/scrobble.conf 2008-10-11 13:35:40 UTC (rev 1368)
@@ -23,15 +23,28 @@
refexamples.useNegation = false;
refexamples.useAllConstructor = false;
refexamples.useCardinalityRestrictions = false;
+
+refexamples.writeSearchTree = true;
+refexamples.searchTreeFile = "log/searchtree.txt";
+refexamples.replaceSearchTree = true;
+
reasoner = fastInstanceChecker;
import("http://dbtune.org/musicbrainz/sparql","SPARQL");
+
// we transform tags to classes
sparql.replacePredicate=[(
"http://www.holygoat.co.uk/owl/redwood/0.1/tags/taggedWithTag",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type")];
+/*
+// some consistency transformation
+sparql.replaceObject=[(
+"http://dbtune.org/musicbrainz/resource/tag/",
+"http://dbtune.org/musicbrainz/resource/tag/tag")];
+*/
+
// some background knowledge about the tags ("semantically enriched tag cloud")
import("scrobble.kb");
Modified: trunk/examples/sparql/scrobble.kb
===================================================================
--- trunk/examples/sparql/scrobble.kb 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/examples/sparql/scrobble.kb 2008-10-11 13:35:40 UTC (rev 1368)
@@ -4,3 +4,12 @@
"http://dbtune.org/musicbrainz/resource/tag/171" = "http://dbtune.org/musicbrainz/resource/tag/237".
// progressive rock is rock
"http://dbtune.org/musicbrainz/resource/tag/29" SUBCLASSOF "http://dbtune.org/musicbrainz/resource/tag/7".
+
+//repetition for valid xml by OWL API
+
+// english implies british
+"http://dbtune.org/musicbrainz/resource/tag/tag1391" SUBCLASSOF "http://dbtune.org/musicbrainz/resource/tag/tag171".
+// Britain = UK
+"http://dbtune.org/musicbrainz/resource/tag/tag171" = "http://dbtune.org/musicbrainz/resource/tag/tag237".
+// progressive rock is rock
+"http://dbtune.org/musicbrainz/resource/tag/tag29" SUBCLASSOF "http://dbtune.org/musicbrainz/resource/tag/tag7".
Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/ClassNode.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/ClassNode.java 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/ClassNode.java 2008-10-11 13:35:40 UTC (rev 1368)
@@ -178,7 +178,7 @@
OWLLabelAnnotation label = factory.getOWLLabelAnnotation(one.getBPart().getLiteral().getString());
owlAPIOntologyCollector.addAxiom(factory.getOWLEntityAnnotationAxiom(me, label));
}else {
- tail(true, "in ontology conversion, no other datatypes, but annotation allowed for class"+" data property is: "+one.getURIString()+" connected with: "+one.getBPart().getNTripleForm());
+ tail(true, "in ontology conversion: no other datatypes, but annotation is allowed for classes."+" data property is: "+one.getURIString()+" connected with: "+one.getBPart().getNTripleForm());
}
Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/Node.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/Node.java 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/Node.java 2008-10-11 13:35:40 UTC (rev 1368)
@@ -40,7 +40,7 @@
.getLogger(Node.class);
// make sure no information is missed during the transition to OWLAPI
- public static final boolean DEBUGTAIL = true;
+ public static final boolean DEBUGTAIL = false;
protected String uri;
// protected String type;
@@ -114,7 +114,7 @@
public void tail(boolean ignore, String tailmessage){
- String message = "difficult tuple. Subject is: "+ this.getURIString()+" of class"+this.getClass().getSimpleName()+" " +
+ String message = "difficult tuple. Subject is: "+ this.getURIString()+" of type: "+this.getClass().getSimpleName()+" " +
"info: "+tailmessage;
if(ignore){
if(DEBUGTAIL){
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-11 10:25:09 UTC (rev 1367)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-11 13:35:40 UTC (rev 1368)
@@ -59,7 +59,6 @@
import org.dllearner.utilities.JamonMonitorLogger;
import org.dllearner.utilities.datastructures.StringTuple;
import org.dllearner.utilities.statistics.SimpleClock;
-import org.semanticweb.owl.model.OWLAxiom;
import org.semanticweb.owl.model.OWLOntology;
import com.jamonapi.Monitor;
@@ -178,7 +177,7 @@
"Specifies whether the extracted ontology is written to a file or not. " +
"The OWL file is written to the cache dir." +
"Some DBpedia URI will make the XML invalid",
- true, false, true));
+ false, false, true));
options.add(new StringTupleListConfigOption("replacePredicate",
"rule for replacing predicates", new ArrayList<StringTuple>(), false, true));
options.add(new StringTupleListConfigOption("replaceObject",
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|
|
From: <jen...@us...> - 2008-10-11 10:25:18
|
Revision: 1367
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1367&view=rev
Author: jenslehmann
Date: 2008-10-11 10:25:09 +0000 (Sat, 11 Oct 2008)
Log Message:
-----------
removed System.out
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-10-11 10:22:01 UTC (rev 1366)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-10-11 10:25:09 UTC (rev 1367)
@@ -307,7 +307,6 @@
boolean owlAPIbuggy = true; // remove once this problem has been resolved in OWL API
if(!owlAPIbuggy || sources.size() < 2) {
for(OWLOntology ont : owlAPIOntologies) {
- System.out.println(ont);
if(!reasoner.isConsistent(ont)) {
inconsistentOntology = true;
throw new ComponentInitException("Inconsistent ontologies.");
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|
|
From: <jen...@us...> - 2008-10-11 10:22:13
|
Revision: 1366
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1366&view=rev
Author: jenslehmann
Date: 2008-10-11 10:22:01 +0000 (Sat, 11 Oct 2008)
Log Message:
-----------
bug fix for scrobble.conf
Modified Paths:
--------------
trunk/examples/sparql/scrobble.conf
trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
Removed Paths:
-------------
trunk/examples/sparql/musicbrainz.conf
Deleted: trunk/examples/sparql/musicbrainz.conf
===================================================================
--- trunk/examples/sparql/musicbrainz.conf 2008-10-11 09:24:11 UTC (rev 1365)
+++ trunk/examples/sparql/musicbrainz.conf 2008-10-11 10:22:01 UTC (rev 1366)
@@ -1,48 +0,0 @@
-
-
-/**
-
- http://www.govtrack.us/sparql.xpd?query=SELECT * WHERE { <http://www.rdfabout.com/rdf/usgov/congress/people/A000360> ?predicate ?object. FILTER( (!isLiteral(?object))).}
-
-**/
-
-sparql.recursionDepth = 4;
-sparql.predefinedEndpoint = "MUSICBRAINZ";
-sparql.predefinedFilter = "YAGO";
-
-sparql.useLits=true;
-
-algorithm = refexamples;
-//reasoner = owlAPIReasoner;
- reasoner = fastInstanceChecker;
-
-
- refexamples.useAllConstructor = false;
- refexamples.useExistsConstructor = true;
- refexamples.useCardinalityRestrictions = false;
-refexamples.useNegation = false;
-
-import("http://dbtune.org/musicbrainz/sparql","SPARQL");
-
-
-/**
-sparql.instances = {
-"http://zitgist.com/music/artist/a066b730-3809-4b39-a091-2297d40b51db",
-"http://zitgist.com/music/artist/cf0f4547-ffbd-4011-98ad-0bec9ba022db"
-};
-
-+"http://zitgist.com/music/artist/a066b730-3809-4b39-a091-2297d40b51db"
--"http://zitgist.com/music/artist/cf0f4547-ffbd-4011-98ad-0bec9ba022db"
-
-
-http://dbtune.org/musicbrainz/resource/track/
-**/
-
-sparql.instances = {
-"http://dbtune.org/musicbrainz/resource/artist/a066b730-3809-4b39-a091-2297d40b51db",
-"http://dbtune.org/musicbrainz/resource/artist/cf0f4547-ffbd-4011-98ad-0bec9ba022db"
-};
-
-+"http://dbtune.org/musicbrainz/resource/artist/a066b730-3809-4b39-a091-2297d40b51db"
--"http://dbtune.org/musicbrainz/resource/artist/cf0f4547-ffbd-4011-98ad-0bec9ba022db"
-
Modified: trunk/examples/sparql/scrobble.conf
===================================================================
--- trunk/examples/sparql/scrobble.conf 2008-10-11 09:24:11 UTC (rev 1365)
+++ trunk/examples/sparql/scrobble.conf 2008-10-11 10:22:01 UTC (rev 1366)
@@ -19,8 +19,6 @@
sparql.recursionDepth = 3;
sparql.predefinedEndpoint = "MUSICBRAINZ";
-// sparql.useLits=true;
-
algorithm = refexamples;
refexamples.useNegation = false;
refexamples.useAllConstructor = false;
Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-10-11 09:24:11 UTC (rev 1365)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-10-11 10:22:01 UTC (rev 1366)
@@ -197,6 +197,7 @@
Set<OWLIndividual> owlIndividuals = new TreeSet<OWLIndividual>(namedObjectComparator);
Set<OWLOntology> allImports = new HashSet<OWLOntology>();
+ prefixes = new TreeMap<String,String>();
for(KnowledgeSource source : sources) {
@@ -204,35 +205,18 @@
URL url=null;
if(source instanceof OWLFile){
url = ((OWLFile)source).getURL();
- }
- else if(source instanceof SparqlKnowledgeSource) {
- source = new OWLAPIOntology(((SparqlKnowledgeSource)source).getOWLAPIOntology());
- //url=((SparqlKnowledgeSource)source).getOntologyFragmentURL();
}
try {
- if(source instanceof OWLAPIOntology)
- {
- OWLOntology ontology = ((OWLAPIOntology)source).getOWLOntolgy();
- owlAPIOntologies.add(ontology);
- allImports.addAll(manager.getImportsClosure(ontology));
- classes.addAll(ontology.getReferencedClasses());
- owlObjectProperties.addAll(ontology.getReferencedObjectProperties());
- owlDatatypeProperties.addAll(ontology.getReferencedDataProperties());
- owlIndividuals.addAll(ontology.getReferencedIndividuals());
-
- // TODO: this obviously works only for exactly one knowledge source
- OWLOntologyFormat format = manager.getOntologyFormat(ontology);
- if(format instanceof NamespaceOWLOntologyFormat)
- {
- prefixes = ((NamespaceOWLOntologyFormat)format).getNamespacesByPrefixMap();
- baseURI = prefixes.get("");
- prefixes.remove("");
- }
+ OWLOntology ontology;
+ if(source instanceof OWLAPIOntology) {
+ ontology = ((OWLAPIOntology)source).getOWLOntolgy();
+ } else if (source instanceof SparqlKnowledgeSource) {
+ ontology = ((SparqlKnowledgeSource)source).getOWLAPIOntology();
+ } else {
+ ontology = manager.loadOntologyFromPhysicalURI(url.toURI());
}
- else
- {
- OWLOntology ontology = manager.loadOntologyFromPhysicalURI(url.toURI());
+
owlAPIOntologies.add(ontology);
allImports.addAll(manager.getImportsClosure(ontology));
classes.addAll(ontology.getReferencedClasses());
@@ -240,17 +224,18 @@
owlDatatypeProperties.addAll(ontology.getReferencedDataProperties());
owlIndividuals.addAll(ontology.getReferencedIndividuals());
- // TODO: this obviously works only for exactly one knowledge source
+ // if several knowledge sources are included, then we can only
+ // guarantee that the base URI is from one of those sources (there
+ // can't be more than one); but we will take care that all prefixes are
+ // correctly imported
OWLOntologyFormat format = manager.getOntologyFormat(ontology);
if(format instanceof NamespaceOWLOntologyFormat) {
- prefixes = ((NamespaceOWLOntologyFormat)format).getNamespacesByPrefixMap();
+ prefixes.putAll(((NamespaceOWLOntologyFormat)format).getNamespacesByPrefixMap());
baseURI = prefixes.get("");
prefixes.remove("");
}
- }
- }
- catch (OWLOntologyCreationException e) {
+ } catch (OWLOntologyCreationException e) {
e.printStackTrace();
} catch (URISyntaxException e) {
e.printStackTrace();
@@ -315,12 +300,21 @@
boolean inconsistentOntology = false;
try {
reasoner.loadOntologies(allImports);
+
+ // OWL API bug: if we test an ontology for consistency, then
+ // this ontology is automatically used for all subsequent
+ // reasoning tasks (and all others ignored)
+ boolean owlAPIbuggy = true; // remove once this problem has been resolved in OWL API
+ if(!owlAPIbuggy || sources.size() < 2) {
for(OWLOntology ont : owlAPIOntologies) {
+ System.out.println(ont);
if(!reasoner.isConsistent(ont)) {
inconsistentOntology = true;
throw new ComponentInitException("Inconsistent ontologies.");
}
}
+ }
+
if(!inconsistentOntology) {
reasoner.classify();
reasoner.realise();
@@ -364,8 +358,10 @@
}
datatypeProperties.add(dtp);
}
- for(OWLIndividual owlIndividual : owlIndividuals)
+ for(OWLIndividual owlIndividual : owlIndividuals) {
individuals.add(new Individual(owlIndividual.getURI().toString()));
+ }
+
}
/* (non-Javadoc)
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|
|
From: <jen...@us...> - 2008-10-11 09:32:28
|
Revision: 1364
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1364&view=rev
Author: jenslehmann
Date: 2008-10-11 09:09:25 +0000 (Sat, 11 Oct 2008)
Log Message:
-----------
fixed debug output
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-10 16:37:57 UTC (rev 1363)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-11 09:09:25 UTC (rev 1364)
@@ -135,8 +135,11 @@
}catch (RuntimeException e) {
- logger.debug("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
- logger.debug("query was (first 300 chars) "+ sparqlQueryString.substring(0,300).replaceAll("\n", " "));
+ if(logger.isDebugEnabled()) {
+ logger.debug("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
+ int length = Math.min(sparqlQueryString.length(), 300);
+ logger.debug("query was (max. 300 chars displayed) "+ sparqlQueryString.substring(0,length-1).replaceAll("\n", " "));
+ }
writeToSparqlLog("ERROR: HTTPException occured: "+ e.toString());
isRunning = false;
throw e;
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|
|
From: <jen...@us...> - 2008-10-11 09:25:13
|
Revision: 1365
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1365&view=rev
Author: jenslehmann
Date: 2008-10-11 09:24:11 +0000 (Sat, 11 Oct 2008)
Log Message:
-----------
CLI bug fix
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/cli/Start.java
Modified: trunk/src/dl-learner/org/dllearner/cli/Start.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/cli/Start.java 2008-10-11 09:09:25 UTC (rev 1364)
+++ trunk/src/dl-learner/org/dllearner/cli/Start.java 2008-10-11 09:24:11 UTC (rev 1365)
@@ -286,7 +286,7 @@
Monitor laMonitor = JamonMonitorLogger.getTimeMonitor(Start.class, "initLearningAlgorithm").start();
ConfFileOption algorithmOption = parser.getConfOptionsByName("algorithm");
Class<? extends LearningAlgorithm> laClass;
- if(problemOption != null) {
+ if(algorithmOption != null) {
laClass = confMapper.getLearningAlgorithmClass(algorithmOption.getStringValue());
if(laClass == null) {
handleError("Invalid value \"" + algorithmOption.getStringValue() + "\" in " + algorithmOption + ". Valid values are " + confMapper.getLearningAlgorithms() + ".");
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|
From: <jen...@us...> - 2008-10-10 16:38:07
|
Revision: 1363
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1363&view=rev
Author: jenslehmann
Date: 2008-10-10 16:37:57 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
updated README and INSTALL
Modified Paths:
--------------
trunk/INSTALL
trunk/examples/sparql/README.txt
Added Paths:
-----------
trunk/examples/krk/README.txt
Modified: trunk/INSTALL
===================================================================
--- trunk/INSTALL 2008-10-10 16:23:50 UTC (rev 1362)
+++ trunk/INSTALL 2008-10-10 16:37:57 UTC (rev 1363)
@@ -8,8 +8,6 @@
Running Instructions
====================
-The instructions assume that you have a usable reasoner running (usually a
-DIG capable reasoner running on http://localhost:8081).
Linux (and other systems)
@@ -31,7 +29,6 @@
===========
If you want to run DL-Learner as a Web Service, you can run the scripts "ws" or
-"ws.bat". They create an own local webserver running DL-Learner. An example
-PHP client is also provided by DL-Learner. It can be downloaded at the
-sourceforge.net project website:
-http://sourceforge.net/project/showfiles.php?group_id=203619
+"ws.bat". They create an own local webserver running DL-Learner. Some simple
+PHP example for using the web service are available at our SVN Repository:
+http://dl-learner.svn.sourceforge.net/viewvc/dl-learner/trunk/src/php-examples/
Added: trunk/examples/krk/README.txt
===================================================================
--- trunk/examples/krk/README.txt (rev 0)
+++ trunk/examples/krk/README.txt 2008-10-10 16:37:57 UTC (rev 1363)
@@ -0,0 +1,7 @@
+This directory contains some files for the King-Rook vs. King problem.
+See: http://archive.ics.uci.edu/ml/datasets/Chess+(King-Rook+vs.+King)
+
+To run all experiments, some of the OWL files have to be generated
+(contact us for further details), which is the reason why not all
+problems in this directory are runnable. We decided not to include the
+necessary large OWL files in the DL-Learner release.
Modified: trunk/examples/sparql/README.txt
===================================================================
--- trunk/examples/sparql/README.txt 2008-10-10 16:23:50 UTC (rev 1362)
+++ trunk/examples/sparql/README.txt 2008-10-10 16:37:57 UTC (rev 1363)
@@ -1,7 +1,5 @@
-Note: DBpedia is always subject to change, solutions will change over time
+Note: DBpedia is always subject to change, so solutions will change over time.
-After using the SPARQL Component, a n-triple file is created at:
-examples/../cache/ or root/cache
-Which contains the used knowledge base.
-
+When using the SPARQL component, files are written into the directory /cache to
+avoid performing the same queries more than once.
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|
From: <jen...@us...> - 2008-10-10 16:23:57
|
Revision: 1362
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1362&view=rev
Author: jenslehmann
Date: 2008-10-10 16:23:50 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
adapted/commented two learning problems
Added Paths:
-----------
trunk/examples/sparql/actors.conf
trunk/examples/sparql/actors2.conf
Removed Paths:
-------------
trunk/examples/sparql/SilentBobWorking1.conf
trunk/examples/sparql/SilentBobWorking2.conf
Deleted: trunk/examples/sparql/SilentBobWorking1.conf
===================================================================
--- trunk/examples/sparql/SilentBobWorking1.conf 2008-10-10 15:44:36 UTC (rev 1361)
+++ trunk/examples/sparql/SilentBobWorking1.conf 2008-10-10 16:23:50 UTC (rev 1362)
@@ -1,44 +0,0 @@
-// Note: DBpedia is always subject to change, solutions will change over time
-
-
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
-
-
-// recursion depth of extraction algorithm
-sparql.recursionDepth = 1;
-
-
-//predefined filter (1 = YAGO based learning)
-// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
-sparql.predefinedFilter = "YAGO";
-sparql.predefinedEndpoint = "DBPEDIA";
-
-
-// use DBpedia endpoint
-import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
-
-// the set of objects as starting point for fragment selection
-// (should be identical to the set of examples)
-sparql.instances = {
-"http://dbpedia.org/resource/Matt_Stone",
-"http://dbpedia.org/resource/Sarah_Silverman",
-"http://dbpedia.org/resource/Jim_Carrey",
-"http://dbpedia.org/resource/Jason_Mewes",
-"http://dbpedia.org/resource/Kevin_Smith",
-"http://dbpedia.org/resource/Trey_Parker",
-"http://dbpedia.org/resource/Adam_Sandler"};
-
-
-
-// http://dbpedia.org/class/yago/agnostic OR http://dbpedia.org/class/yago/artist
-// http://dbpedia.org/class/yago/agnostic OR http://dbpedia.org/class/yago/teetotaler
-
-+"http://dbpedia.org/resource/Matt_Stone"
-+"http://dbpedia.org/resource/Sarah_Silverman"
--"http://dbpedia.org/resource/Jim_Carrey"
--"http://dbpedia.org/resource/Jason_Mewes"
--"http://dbpedia.org/resource/Kevin_Smith"
--"http://dbpedia.org/resource/Trey_Parker"
--"http://dbpedia.org/resource/Adam_Sandler"
\ No newline at end of file
Deleted: trunk/examples/sparql/SilentBobWorking2.conf
===================================================================
--- trunk/examples/sparql/SilentBobWorking2.conf 2008-10-10 15:44:36 UTC (rev 1361)
+++ trunk/examples/sparql/SilentBobWorking2.conf 2008-10-10 16:23:50 UTC (rev 1362)
@@ -1,51 +0,0 @@
-//Note: DBpedia is always subject to change, solutions will change over time
-
-
-refinement.useAllConstructor = false;
-refinement.useExistsConstructor = true;
-refinement.useNegation = false;
-
-
-// recursion depth of extraction algorithm
-sparql.recursionDepth = 1;
-
-
-//predefined filter (1 = YAGO based learning)
-// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
-sparql.predefinedFilter = "YAGO";
-sparql.predefinedEndpoint = "DBPEDIA";
-
-
-// use DBpedia endpoint
-import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
-
-// the set of objects as starting point for fragment selection
-// (should be identical to the set of examples)
-sparql.instances = {
- "http://dbpedia.org/resource/Matt_Stone",
-"http://dbpedia.org/resource/Sarah_Silverman",
-"http://dbpedia.org/resource/Kevin_Smith",
-
-"http://dbpedia.org/resource/Jason_Mewes",
-"http://dbpedia.org/resource/Jim_Carrey",
-"http://dbpedia.org/resource/Trey_Parker",
-"http://dbpedia.org/resource/Adam_Sandler"
-
-};
-
-
-/*
-Category:1970s AND Category:Religion_in_the_United_States
-Category:Actors AND Category:Religion_in_the_United_States
-*/
-
-+"http://dbpedia.org/resource/Matt_Stone"
-+"http://dbpedia.org/resource/Sarah_Silverman"
-+"http://dbpedia.org/resource/Kevin_Smith"
-
--"http://dbpedia.org/resource/Jason_Mewes"
--"http://dbpedia.org/resource/Jim_Carrey"
--"http://dbpedia.org/resource/Trey_Parker"
--"http://dbpedia.org/resource/Adam_Sandler"
-
-
Copied: trunk/examples/sparql/actors.conf (from rev 1360, trunk/examples/sparql/SilentBobWorking1.conf)
===================================================================
--- trunk/examples/sparql/actors.conf (rev 0)
+++ trunk/examples/sparql/actors.conf 2008-10-10 16:23:50 UTC (rev 1362)
@@ -0,0 +1,35 @@
+/**
+ * Learning problem involving some actors.
+ *
+ * Note: DBpedia is always subject to change, solutions will change over time
+ */
+
+// recursion depth of extraction algorithm
+sparql.recursionDepth = 1;
+
+//predefined filter (1 = YAGO based learning)
+// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
+sparql.predefinedFilter = "YAGO";
+sparql.predefinedEndpoint = "DBPEDIA";
+
+// use DBpedia endpoint
+import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
+
+// the set of objects as starting point for fragment selection
+// (should be identical to the set of examples)
+sparql.instances = {
+"http://dbpedia.org/resource/Matt_Stone",
+"http://dbpedia.org/resource/Sarah_Silverman",
+"http://dbpedia.org/resource/Jim_Carrey",
+"http://dbpedia.org/resource/Jason_Mewes",
+"http://dbpedia.org/resource/Kevin_Smith",
+"http://dbpedia.org/resource/Trey_Parker",
+"http://dbpedia.org/resource/Adam_Sandler"};
+
++"http://dbpedia.org/resource/Matt_Stone"
++"http://dbpedia.org/resource/Sarah_Silverman"
+-"http://dbpedia.org/resource/Jim_Carrey"
+-"http://dbpedia.org/resource/Jason_Mewes"
+-"http://dbpedia.org/resource/Kevin_Smith"
+-"http://dbpedia.org/resource/Trey_Parker"
+-"http://dbpedia.org/resource/Adam_Sandler"
\ No newline at end of file
Copied: trunk/examples/sparql/actors2.conf (from rev 1360, trunk/examples/sparql/SilentBobWorking2.conf)
===================================================================
--- trunk/examples/sparql/actors2.conf (rev 0)
+++ trunk/examples/sparql/actors2.conf 2008-10-10 16:23:50 UTC (rev 1362)
@@ -0,0 +1,43 @@
+/**
+ * Learning problem involving some actors.
+ *
+ * Note: DBpedia is always subject to change, solutions will change over time
+ */
+
+refexamples.useAllConstructor = false;
+
+// recursion depth of extraction algorithm
+sparql.recursionDepth = 1;
+
+//predefined filter (1 = YAGO based learning)
+// 2 = SKOS, more Options are needed then though. replacePredicate, breakSuperClassRetrievalAfter
+sparql.predefinedFilter = "YAGO";
+sparql.predefinedEndpoint = "DBPEDIA";
+
+// use DBpedia endpoint
+import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
+
+// the set of objects as starting point for fragment selection
+// (should be identical to the set of examples)
+sparql.instances = {
+ "http://dbpedia.org/resource/Matt_Stone",
+"http://dbpedia.org/resource/Sarah_Silverman",
+"http://dbpedia.org/resource/Kevin_Smith",
+
+"http://dbpedia.org/resource/Jason_Mewes",
+"http://dbpedia.org/resource/Jim_Carrey",
+"http://dbpedia.org/resource/Trey_Parker",
+"http://dbpedia.org/resource/Adam_Sandler"
+
+};
+
++"http://dbpedia.org/resource/Matt_Stone"
++"http://dbpedia.org/resource/Sarah_Silverman"
++"http://dbpedia.org/resource/Kevin_Smith"
+
+-"http://dbpedia.org/resource/Jason_Mewes"
+-"http://dbpedia.org/resource/Jim_Carrey"
+-"http://dbpedia.org/resource/Trey_Parker"
+-"http://dbpedia.org/resource/Adam_Sandler"
+
+
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|
|
From: <jen...@us...> - 2008-10-10 15:44:42
|
Revision: 1361
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1361&view=rev
Author: jenslehmann
Date: 2008-10-10 15:44:36 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
fixed 3 examples (2 remaining)
Modified Paths:
--------------
trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf
trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf
trunk/examples/sparql/govtrack.conf
trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
Modified: trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf
===================================================================
--- trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf 2008-10-10 08:39:29 UTC (rev 1360)
+++ trunk/examples/krk/KRK_ZERO_against_1to5_fastInstance.conf 2008-10-10 15:44:36 UTC (rev 1361)
@@ -1,22 +1,11 @@
/**
-DEBUG - --- loop 22845 started ---
-DEBUG - start node: TOP [acc:2,452% h:-0,192 q:0p-1074n (START), he:14 c:9568]
-DEBUG - currently best node: ALL "hasPiece".(ALL "fileDistance1"."BKing" AND ALL "fileDistance6"."WRook" AND ALL "fileDistance7"."WKing" AND (EXISTS "fileDistanceLessThan3".(EXISTS "fileDistanceLessThan2".ALL "rankDistance1"."WKing" AND ALL "rankDistance1"."WKing") OR ("WRook" AND EXISTS "hasLowerRankThan".TOP))) [acc:92,461% h:0,124 q:0p-83n (REASONER), he:32 c:14]
-DEBUG - next expanded node: ALL "hasPiece".(ALL "fileDistance1"."BKing" AND ALL "fileDistance6"."WRook" AND ALL "fileDistance7"."WKing" AND (EXISTS "fileDistanceLessThan3".(EXISTS "fileDistanceLessThan1".ALL "fileDistanceLessThan4".TOP AND ALL "rankDistance1"."WKing") OR ("WRook" AND EXISTS "hasLowerRankThan".ALL "rankDistance1".BOTTOM))) [acc:92,461% h:0,125 q:0p-83n (REASONER), he:32 c:0]
-DEBUG - algorithm runtime 2351s 900ms
-DEBUG - size of candidate set: 4247
-DEBUG - subsumption time: 22ms
-DEBUG - instance check time: 2036s 942ms
-DEBUG - retrieval time: 0ms
-DEBUG - properness tests (reasoner/short concept/too weak list): 0/236/4043
-DEBUG - concept tests (reasoner/too weak list/overly general list/redundant concepts): 162475/4043/10296/41312
+ * KRK problem.
+ * We try to distinguish mate positions from those which are mate in 1 to 5.
+ * DL-Learner will find a solution with 98% accuracy, but not a perfect one (in short time).
+ * You can experiment with the noise parameter and observe the search tree to find out more.
+ **/
-
-**/
-
-
-
import("KRK_ZERO_against_1to5.owl");
refexamples.ignoredConcepts={
@@ -27,14 +16,11 @@
"http://www.test.de/test#TWO",
"http://www.test.de/test#ZERO"};
-//problem = posOnlyDefinition;
-
algorithm = refexamples;
-//algorithm = refinement;
-//refinement.heuristic=flexible;
reasoner=fastInstanceChecker;
refexamples.startClass = "http://www.test.de/test#Game";
-//refexamples.useAllConstructor = false;
+refexamples.useAllConstructor = false;
+refexamples.noisePercentage = 2;
/**ZERO**/
+"http://www.test.de/test#game1"
Modified: trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf
===================================================================
--- trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf 2008-10-10 08:39:29 UTC (rev 1360)
+++ trunk/examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf 2008-10-10 15:44:36 UTC (rev 1361)
@@ -36,7 +36,7 @@
*/
-
+// refexamples.ignoredRoles = {"http://dbpedia.org/property/spouse"};
// recursion depth of extraction algorithm
sparql.recursionDepth = 1;
@@ -48,7 +48,9 @@
"http://dbpedia.org/property/reference",
"http://dbpedia.org/property/website",
"http://dbpedia.org/property/wikipage",
- "http://dbpedia.org/property/wikiPageUsesTemplate"};
+ "http://dbpedia.org/property/wikiPageUsesTemplate",
+ "http://dbpedia.org/property/spouse"
+};
// list of ignored objects
sparql.objList = { "http://xmlns.com/foaf/0.1/",
Modified: trunk/examples/sparql/govtrack.conf
===================================================================
--- trunk/examples/sparql/govtrack.conf 2008-10-10 08:39:29 UTC (rev 1360)
+++ trunk/examples/sparql/govtrack.conf 2008-10-10 15:44:36 UTC (rev 1361)
@@ -1,3 +1,9 @@
+/**
+ * GovTrack example. It does not produce anything meaningful yet.
+ * We either need to support datatype properties in owl:hasValue
+ * or convert some of the datatype properties into object properties,
+ * e.g. "Democrat" or "Republican" into a class.
+ */
sparql.recursionDepth = 3;
sparql.predefinedEndpoint = "GOVTRACK";
@@ -2,7 +8,11 @@
sparql.useLits = true;
+sparql.saveExtractedFragment = true;
algorithm = refexamples;
-reasoner = owlAPIReasoner;
-// reasoner = fastInstanceChecker;
+refexamples.ignoredRoles = { "http://www.w3.org/2002/07/owl#sameAs"};
+refexamples.useHasValueConstructor = true;
+refexamples.valueFrequencyThreshold = 1;
+reasoner = fastInstanceChecker;
+
import("http://www.govtrack.us/sparql","SPARQL");
Modified: trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-10 08:39:29 UTC (rev 1360)
+++ trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-10 15:44:36 UTC (rev 1361)
@@ -89,15 +89,15 @@
// ignored due to errors (should be fixed; in case of long running problems or
// our of memory, it is better to increase the noise parameter and add comments
// in the conf file about "optimal" parameters)
- ignore.add("./examples/sparql/govtrack.conf"); // HTTP 500 Server error
+ // ignore.add("./examples/sparql/govtrack.conf"); // HTTP 500 Server error
ignore.add("./examples/sparql/musicbrainz.conf"); // HTTP 502 error - NullPointer in extraction
//working fine here ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
ignore.add("./examples/sparql/scrobble.conf"); // HTTP 502 Proxy Error
// ignore.add("./examples/family-benchmark/Cousin.conf"); // Out of Memory Error => disallowing ALL helps (TODO find out details)
//also working fine ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
- ignore.add("./examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf"); // Pellet: literal cannot be cast to individual
+ // ignore.add("./examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf"); // Pellet: literal cannot be cast to individual
// ignore.add("./examples/family-benchmark/Aunt.conf"); // did not terminate so far (waited 45 minutes) => disallowing ALL helps (TODO find out details)
- ignore.add("./examples/krk/KRK_ZERO_against_1to5_fastInstance.conf"); // Out of Memory Error
+ // ignore.add("./examples/krk/KRK_ZERO_against_1to5_fastInstance.conf"); // Out of Memory Error
//removed ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
int failedCounter = 0;
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|
|
From: <ku...@us...> - 2008-10-10 08:43:50
|
Revision: 1360
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1360&view=rev
Author: kurzum
Date: 2008-10-10 08:39:29 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-10 07:52:08 UTC (rev 1359)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-10 08:39:29 UTC (rev 1360)
@@ -292,9 +292,7 @@
fragment = m.getOWLAPIOntologyForNodes(seedNodes, configurator.getSaveExtractedFragment());
- for (OWLAxiom a : fragment.getClassAxioms()){
- System.out.println(a);
- }
+
logger.info("Finished collecting fragment. needed "+extractionTime.getLastValue()+" ms");
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|
|
From: <ku...@us...> - 2008-10-10 07:52:16
|
Revision: 1359
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=1359&view=rev
Author: kurzum
Date: 2008-10-10 07:52:08 +0000 (Fri, 10 Oct 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/cli/QuickStart.java
trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
Modified: trunk/src/dl-learner/org/dllearner/cli/QuickStart.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/cli/QuickStart.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/cli/QuickStart.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -29,6 +29,7 @@
import java.util.Arrays;
import java.util.HashMap;
import java.util.Iterator;
+import java.util.List;
/**
* A tool to quickly start a learning example. It detects all conf files in the
@@ -38,14 +39,15 @@
* @author Jens Lehmann
*/
public class QuickStart {
-
+
// static HashMap<String, ArrayList<String>> hm = null;
static String pm = ".";// pathmodifier
+ static List<String> conffiles = new ArrayList<String>();
public static void main(String[] args) {
-
+
String lastused = readit();
String tab = " ";
int the_Number = 0;
@@ -119,7 +121,27 @@
number = true;
break;
} catch (Exception e) {
+
+ for(String one:conffiles){
+
+ if(one.contains(cmd)){
+ System.out.println("Did you mean "+one+" ? (Press enter to confirm,\n" +
+ "any key+enter for another try)");
+ cmd = br.readLine();
+ if(cmd.length()==0){
+ writeit(one);
+ if(!query) {
+ Start.main(new String[] { one });
+ }else {
+ Start.main(new String[] {"-q",one});
+ }
+ return;
+ }else {break;}
+ }
+ }
+
System.out.println("Not a number");
+ continue;
}
}// end while
@@ -166,6 +188,7 @@
confs.put(path, new ArrayList<String>());
}
confs.get(path).add(act[i].substring(0, act[i].length() - 5));
+ conffiles.add(path+act[i]);
// System.out.println(act[i].substring(0,act[i].length()-5));
// System.out.println(hm.get(path).size());
// hm.put(new
Modified: trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/extraction/InstanceNode.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -195,7 +195,7 @@
//OWLCommentAnnotation comment = factory.getOWL(one.b.toString());
//owlAPIOntologyCollector.addAxiom(factory.getOWLEntityAnnotationAxiom(me, label));
}else if(one.getURIString().equals(OWLVocabulary.RDFS_LABEL)){
- OWLLabelAnnotation label = factory.getOWLLabelAnnotation(one.b.toString());
+ OWLLabelAnnotation label = factory.getOWLLabelAnnotation(ln.getString());
owlAPIOntologyCollector.addAxiom(factory.getOWLEntityAnnotationAxiom(me, label));
}else{
Modified: trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/manipulator/ObjectReplacementRule.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -45,8 +45,9 @@
public SortedSet<RDFNodeTuple> applyRule(Node subject, SortedSet<RDFNodeTuple> tuples){
SortedSet<RDFNodeTuple> keep = new TreeSet<RDFNodeTuple>();
for (RDFNodeTuple tuple : tuples) {
- if(tuple.aPartContains(oldObject)){
- tuple.a = new ResourceImpl(newObject);
+ if(tuple.bPartContains(oldObject)){
+ String tmp = tuple.b.toString().replace(oldObject, newObject);
+ tuple.b = new ResourceImpl(tmp);
JamonMonitorLogger.increaseCount(ObjectReplacementRule.class, "replacedObjects");
}
keep.add(tuple);
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SPARQLTasks.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -440,7 +440,7 @@
rsw.reset();
} catch (Exception e) {
- logger.warn("Exception caught in SPARQLTasks, passing emtpy result: "+e.getMessage());
+ logger.info("ignoring (see log for details): Exception caught in SPARQLTasks, passing emtpy result: "+e.getMessage());
}
return returnSet;
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -59,6 +59,7 @@
import org.dllearner.utilities.JamonMonitorLogger;
import org.dllearner.utilities.datastructures.StringTuple;
import org.dllearner.utilities.statistics.SimpleClock;
+import org.semanticweb.owl.model.OWLAxiom;
import org.semanticweb.owl.model.OWLOntology;
import com.jamonapi.Monitor;
@@ -291,7 +292,9 @@
fragment = m.getOWLAPIOntologyForNodes(seedNodes, configurator.getSaveExtractedFragment());
-
+ for (OWLAxiom a : fragment.getClassAxioms()){
+ System.out.println(a);
+ }
logger.info("Finished collecting fragment. needed "+extractionTime.getLastValue()+" ms");
Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQuery.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -127,16 +127,16 @@
//writeToSparqlLog("JSON: " + json);
//}catch (ResultSetException e) {
} catch (HTTPException e) {
- logger.warn("HTTPException in SparqlQuery\n"+ e.toString());
- logger.warn("query was "+ sparqlQueryString);
+ logger.debug("HTTPException in SparqlQuery\n"+ e.toString());
+ logger.debug("query was "+ sparqlQueryString);
writeToSparqlLog("ERROR: HTTPException occured"+ e.toString());
isRunning = false;
throw e;
}catch (RuntimeException e) {
- logger.warn("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
- logger.warn("query was (first 300 chars) "+ sparqlQueryString.substring(0,300).replaceAll("\n", " "));
+ logger.debug("RuntimeException in SparqlQuery (see /log/sparql.txt): "+ e.toString());
+ logger.debug("query was (first 300 chars) "+ sparqlQueryString.substring(0,300).replaceAll("\n", " "));
writeToSparqlLog("ERROR: HTTPException occured: "+ e.toString());
isRunning = false;
throw e;
Modified: trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-09 22:26:23 UTC (rev 1358)
+++ trunk/src/dl-learner/org/dllearner/test/junit/ExampleTests.java 2008-10-10 07:52:08 UTC (rev 1359)
@@ -91,14 +91,14 @@
// in the conf file about "optimal" parameters)
ignore.add("./examples/sparql/govtrack.conf"); // HTTP 500 Server error
ignore.add("./examples/sparql/musicbrainz.conf"); // HTTP 502 error - NullPointer in extraction
- ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
+ //working fine here ignore.add("./examples/sparql/SKOSTEST_local.conf"); // Out of Memory Error
ignore.add("./examples/sparql/scrobble.conf"); // HTTP 502 Proxy Error
// ignore.add("./examples/family-benchmark/Cousin.conf"); // Out of Memory Error => disallowing ALL helps (TODO find out details)
- ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
+ //also working fine ignore.add("./examples/sparql/SilentBobWorking2.conf"); // Out of Memory Error
ignore.add("./examples/sparql/difference/DBPediaSKOS_kohl_vs_angela.conf"); // Pellet: literal cannot be cast to individual
// ignore.add("./examples/family-benchmark/Aunt.conf"); // did not terminate so far (waited 45 minutes) => disallowing ALL helps (TODO find out details)
ignore.add("./examples/krk/KRK_ZERO_against_1to5_fastInstance.conf"); // Out of Memory Error
- ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
+ //removed ignore.add("./examples/semantic_bible/normal_test.conf"); // did not terminate (waited 55 minutes)
int failedCounter = 0;
for (String path : confFiles.keySet()) {
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