also consider shared name, default for cy 3.2.1
updating dependency versions, copyright years
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preparing for version 9 release
increasing unit test coverage
updating copyright years to include 2015
adding compressedInputStream and related, updat...
updating dependency versions
adding thumbnail cache
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update bdg-formats dependency version to 0.5.0
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oops
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javadoc improvements, added additional performa...
increasing unit test coverage
use specific subclass return values for logical...
adding new static logic methods, new forEach me...
adding last modified cache, still needs another...
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update commons-codec dependency version to 1.10
update glazedlist dependency version to 1.9.1
fix typo
updating plugin dependency versions
missing license header
minor doc fix
refactor from 1-based fully closed to 0-based c...
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removing range package in favor of org.nmdp.ngs...
removing range package in favor of org.nmdp.ngs...
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refactoring vcf package, use ngs-variant instea...
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update copyright year to include 2015
adding getWlen method to UnsafeBitSet
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update ga4gh-format dependency to version 0.6.0...
update ensembl-rest-client to version 2.0-rc2
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updating bdg-formats dependency version to 0.4.0
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minor style fixes
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adding new usage method that accepts a header
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default to jdk 1.7
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updating ensembl-rest-client dependency version...
use public visibility for javadoc
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minor style fixes, update biojava dependency to...
merge adam package from github repo
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checkstyle config fix for maven-checkstyle-plug...
updating maven plugin dependency versions
update per latest GA4GA schema changes
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missed adding new file
add retryIfNecessary to ensembl rest client rem...
adding dsh-compress dependency to handle gzip, ...
prevent throttling by Ensembl beta endpoints, r...
google genomics is 1-based
fix for jdk 1.6 file chooser issues
allow multiple nodes to map to the same feature
fix for NPE
start, end are longs
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