Re: [Denovoassembler-users] Request for guidance

[Sébastien B. <se...@bo...>]

make HAVE_LIBZ=y


________________________________
From: Jason Tan <jas...@gm...>
Sent: November 15, 2016 7:40 AM
To: den...@li...
Cc: Sébastien Boisvert
Subject: Re: Request for guidance

Hi Admin,

I followed the INSTALL.txt guideline as attached to install Ray but i have no clue to go further.
Could you please guide me how to enable .gz support?

Thanks
Jason

On Tue, Nov 15, 2016 at 9:12 PM, Sébastien Boisvert <se...@bo...<mailto:se...@bo...>> wrote:

Hi Jason,


Please post your questions to the mailing list (in CC).


Did you enable .gz support when you built the software Ray from source ?

________________________________
From: Jason Tan <jas...@gm...<mailto:jas...@gm...>>
Sent: November 15, 2016 3:47 AM
To: se...@bo...<mailto:se...@bo...>
Subject: Request for guidance

Dear Admin,

Thank you for contributing this useful piece of software.

I am using Ubuntu as my working platform but i received an error "Rank 0 : no input files, aborting" when i executed Ray program of Ray-2.3.1.tar.bz2 which is downloaded from this website

https://sourceforge.net/projects/denovoassembler/files/
Ray, a de novo assembler using MPI 2.2 - Browse Files at ...<https://sourceforge.net/projects/denovoassembler/files/>
sourceforge.net<http://sourceforge.net>
Ray -- Parallel genome assemblies for parallel DNA sequencing


The command that i entered was

mpiexec -n 2 ray-build/Ray -detect-sequence-files SRR1633365 -show memory-usage

and the file SRR1633365.fastq.gz is in the folder SRR1633365

However, when i installed the Ray by using this command, it can be executed successfully.

sudo apt-get install Ray
mpiexec -n 2 Ray -detect-sequence-files SRR1633365 -show memory-usage


Could you please guide me the solution to this problem?

Thanks
Jason