Re: [Denovoassembler-users] Request for guidance

[Jason T. <jas...@gm...>]

Hi Admin,

I followed the INSTALL.txt guideline as attached to install Ray but i have
no clue to go further.
Could you please guide me how to enable .gz support?

Thanks
Jason

On Tue, Nov 15, 2016 at 9:12 PM, Sébastien Boisvert <se...@bo...>
wrote:

> Hi Jason,
>
>
> Please post your questions to the mailing list (in CC).
>
> Did you enable .gz support when you built the software Ray from source ?
>
> ------------------------------
> *From:* Jason Tan <jas...@gm...>
> *Sent:* November 15, 2016 3:47 AM
> *To:* se...@bo...
> *Subject:* Request for guidance
>
> Dear Admin,
>
> Thank you for contributing this useful piece of software.
>
> I am using Ubuntu as my working platform but i received an error "Rank 0 :
> no input files, aborting" when i executed Ray program of Ray-2.3.1.tar.bz2
> which is downloaded from this website
>
> https://sourceforge.net/projects/denovoassembler/files/
> Ray, a de novo assembler using MPI 2.2 - Browse Files at ...
> <https://sourceforge.net/projects/denovoassembler/files/>
> sourceforge.net
> Ray -- Parallel genome assemblies for parallel DNA sequencing
>
> The command that i entered was
>
> mpiexec -n 2 ray-build/Ray -detect-sequence-files SRR1633365 -show
> memory-usage
>
> and the file SRR1633365.fastq.gz is in the folder SRR1633365
>
> However, when i installed the Ray by using this command, it can be
> executed successfully.
>
> sudo apt-get install Ray
> mpiexec -n 2 Ray -detect-sequence-files SRR1633365 -show memory-usage
>
>
> Could you please guide me the solution to this problem?
>
> Thanks
> Jason
>