Re: [Denovoassembler-users] Question about "build script" for the annotation files

[Boisvert, S. <boi...@an...>]

I am not aware of any updated build script to generate the desired files from
the new input files.

________________________________________
From: Marc P. Hoeppner [m.h...@ik...]
Sent: Monday, June 29, 2015 9:05 AM
To: den...@li...
Subject: [Denovoassembler-users] Question about "build script" for the  annotation files

- repositing, since the first one didn't go through -

Hi,

I've been trying to get all the various files Ray can use to
annotate/profile metagenomic assemblies. For that, I used the scripts
that are included with the git repo for the 2012 publication.
Unfortunately, these scripts no longer work (mostly due to changed file
locations on remote servers, but I think also because some of the input
files are no longer maintained or have changed format). This makes it a
bit unclear how get all of this set up so that Ray could use it.

Is there perhaps an updated build script or some more detailed
explanation of what is needed, exactly?

Kind regards,

Marc

--
Marc P. Hoeppner, PhD

Institute of Clinical Molecular Biology
Christian-Albrechts-University of Kiel

University Hospital Schleswig Holstein · Campus Kiel
Schittenhelmstr. 12 · 24105 Kiel, Germany

+49 (0) 431 / 597 - 38 82
m.h...@ik...




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