Re: [Denovoassembler-users] (no subject)

[Hornung, B. <bas...@wu...>]

I have not really any specific idea, but "Killed (signal 9)" can mean (I think) that the Kernel could have killed your process (at least it sounds like it to me). Reasons can be that you ran out of RAM + swap on your machine.

________________________________
From: Alma Parada <alm...@gm...>
Sent: Monday, June 29, 2015 18:07
To: Boisvert, Sebastien
Cc: den...@li...
Subject: Re: [Denovoassembler-users] (no subject)

Hello,
What other information would be useful in figuring out the reason I received this signal? I'd be glad to get you more info.
thanks,
alma



On Jun 29, 2015, at 7:32 AM, Boisvert, Sebastien <boi...@an...<mailto:boi...@an...>> wrote:

The signal 9 is SIGKILL.

It is hard to tell the exact reason why your process received this signal
with the information you provided.

________________________________
From: Alma Parada [alm...@gm...<mailto:alm...@gm...>]
Sent: Saturday, June 27, 2015 9:50 AM
To: den...@li...<mailto:den...@li...>
Subject: [Denovoassembler-users] (no subject)

Hello,
I was running an assembly of 12 metagenomes and got the message below, what does it mean?
Thanks,
alma


===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions