[Denovoassembler-devel] pull request for GenomeAssemblyReader

[Maxime D. <max...@gm...>]

Hi,

I have added 2 classes in Ray to load and "kmerized" any fasta files,
it can be assembly contigs or reference genomes.

It aims to be used with Surveyor the same way as it was for loading a
graph :
    -read-sample-assembly
instead of
    -read-sample-graph

------
mpiexec -n 2 ../Ray \
    -k 31 \
    -output RaySurveyorResults-assembly \
    -run-surveyor \
    -read-sample-assembly test1 ./contigs/test.fasta \
    -read-sample-assembly test2 ./contigs/test2.fasta \
------

it can be find in this commit
bb7c62d5c8ed0dceab6571dcbac9382467b15de7
@ https://github.com/Zorino/ray/commits/master

cheers,

Maxime