[Denovoassembler-devel] RE : Why flush both k-mer and its complement?

[Sébastien B. <seb...@ul...>]

Yes, it will double all the numbers.

I saw that in your patch !

See my other email.

If you have time, you can implement the pseudo-algorithm I devised in the other email.

It should be safe.


Also, I would need you to use git format-patch (see code/Submit-a-patch.txt) should
you submit me a patch that I would merge because otherwise the Author field in the commit 
would not be properly populated. (You would be the author and I would be the committer).

> On 21/07/11 17:07, David Eccles (gringer) wrote:
>> Okay, I've attached a patch that just does the flush twice without any
>> additional reverse complelements.
> 
> Er, sorry, that patch seems to alter the coverage distribution. The unit
> tests I was able to do were successful, but I guess the coverage was
> important this time.
> 
> phix_5k_1/2 with patch:
> 
> http://pastebin.com/1nnezJrQ
> 
> phix_5k_1/2 without patch:
> 
> http://pastebin.com/d3PNUBfQ
> 
> -- David

                                                     Sébastien