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From: David E. (gringer) <dav...@mp...> - 2011-07-15 08:12:58
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On 14/07/11 16:21, Sébastien Boisvert wrote: > Works fine on my branch master. And also on my local copy of your master on my MPI desktop, even when running with just 1 processor, carrying out the same steps that failed a day ago on my laptop: $ readSimulator/VirtualNextGenSequencer ~/data-for-system-tests/phix/phix.fasta 0 200 10 500000 50 phix_500k_1.fasta phix_500k_2.fasta $ ./code/Ray -p phix_500k_1.fasta phix_500k_2.fasta [i.e. only one processor] Number of contigs: 1 Total length of contigs: 5384 Number of contigs >= 500 nt: 1 Total length of contigs >= 500 nt: 5384 Number of scaffolds: 1 Total length of scaffolds: 5384 Number of scaffolds >= 500 nt: 1 Total length of scaffolds >= 500: 5384 > Your distribution has 2 peaks. Yes, I did notice that. Not quite sure how that happened given that I'm working off the same code. I'll fetch the input data that failed once I get back home, and also see what happens with real phiX data off our sequencer. Thanks for trying this out, -- David |
