Activity for DEET

  • Mosquito-Lab committed [f4a2cc]

    now taking any non-space character for SEQ ID

  • Joshua Burkhart Joshua Burkhart committed [8ba70b]

    Merge branch 'master' of github.com:joshuaburkh...

  • Joshua Burkhart Joshua Burkhart committed [9a76a5]

    Updating & Formatting Readme

  • Mosquito-Lab committed [940e9e]

    various updates after testing with duncan's dat...

  • Mosquito-Lab committed [bb7ea4]

    parsing RNAseq data tested working...

  • Joshua Burkhart committed [3236a6]

    ..

  • Joshua Burkhart committed [2f3a5a]

    should be faster and better at parsing e vals f...

  • Joshua Burkhart Joshua Burkhart committed [1253b9]

    Update README.md

  • Joshua Burkhart committed [9aa12a]

    adding regular collection serialization

  • Joshua Burkhart Joshua Burkhart committed [e8ae07]

    Updating & Formatting Readme

  • Joshua Burkhart committed [7a785c]

    getting results for remaining seqs

  • Joshua Burkhart committed [3a4007]

    checking for existing out files

  • Joshua Burkhart Joshua Burkhart committed [98cccd]

    Merge branch 'master' of github.com:joshuaburkh...

  • Mosquito-Lab committed [a8987a]

    trying to add gene locus tags & names..

  • Joshua Burkhart committed [b68851]

    modifying log handl

  • Joshua Burkhart Joshua Burkhart committed [b698d1]

    Updating .pbs in Readme

  • Mosquito-Lab committed [d05d26]

    MicroArrayHashBuilder tested working

  • Joshua Burkhart committed [a36fe8]

    ..

  • Joshua Burkhart committed [b8b86b]

    now using csv tabular format, optomizing for 32...

  • Joshua Burkhart Joshua Burkhart committed [1156a6]

    updating pbs for longfat

  • Mosquito-Lab committed [26cf40]

    adding parameter logging

  • Joshua Burkhart committed [1f0b72]

    ..

  • Joshua Burkhart committed [368d34]

    ..

  • Joshua Burkhart committed [b709db]

    ..

  • Mosquito-Lab committed [38a535]

    adding timer and catching EOF on puts...

  • Joshua Burkhart Joshua Burkhart committed [67351e]

    Initial commit

  • Mosquito-Lab committed [b55303]

    fixing ux bug

  • Joshua Burkhart committed [3f0b63]

    modifying blast command / interaction / output ...

  • Mosquito-Lab committed [8f570a]

    NCBIBlastRestult tested working..

  • Joshua Burkhart Joshua Burkhart committed [5e209a]

    Fixing Typo

  • Mosquito-Lab committed [e3cc31]

    handling emperical errors..

  • Mosquito-Lab committed [857ed5]

    working on adding orphan feature / seqs file

  • Joshua Burkhart Joshua Burkhart committed [36e810]

    fixing regex to ignore existence of locus in db...

  • Joshua Burkhart Joshua Burkhart committed [edad1b]

    chmod +x deet_local_db.rb

  • Mosquito-Lab committed [4eddcb]

    ready for full system test...

  • Mosquito-Lab committed [d87d1e]

    initializing Sequence.@acc_num to "N/A"

  • Joshua Burkhart Joshua Burkhart committed [3d2d8f]

    removing \

  • Joshua Burkhart Joshua Burkhart committed [d9d7d5]

    Update README.md

  • Mosquito-Lab committed [3dfb5d]

    Merge branch 'master' of https://github.com/jos...

  • Joshua Burkhart committed [a77618]

    adding mismatch lines

  • Joshua Burkhart committed [c01251]

    ..

  • Mosquito-Lab committed [dab6e4]

    ..

  • Joshua Burkhart committed [5f3dcc]

    modifying block structure

  • Joshua Burkhart Joshua Burkhart committed [409bec]

    adding doi following initial release

  • Mosquito-Lab committed [f725f1]

    now matching linked locus tags

  • Mosquito-Lab committed [b786a4]

    just getting started..

  • Joshua Burkhart committed [152874]

    modifying seq match regex

  • Mosquito-Lab committed [dab465]

    working on seqs file creation..

  • Joshua Burkhart committed [ca0c31]

    changing class name for load

  • Joshua Burkhart committed [f9ca90]

    adding aptana project file, removing exit

  • Mosquito-Lab committed [929498]

    updating readme..

  • Mosquito-Lab committed [41b847]

    tested working

  • Mosquito-Lab committed [d65265]

    finished step 2 of overview

  • Mosquito-Lab committed [6e6212]

    Alignment tested working..

  • Joshua Burkhart committed [811ae1]

    trying to catch AnnotFinder errors and hunreach...

  • Joshua Burkhart committed [dc0f44]

    adding Errno::ENETUNREACH to possible network e...

  • Joshua Burkhart committed [4ff30a]

    assuring outfile does not exist

  • Mosquito-Lab committed [6eb88f]

    NCBIBlaster tested working...

  • Joshua Burkhart committed [232cae]

    ..

  • Joshua Burkhart committed [83e494]

    reading with filehandl

  • Joshua Burkhart committed [86451e]

    changing filename

  • Joshua Burkhart Joshua Burkhart committed [a38ff8]

    changing filepaths & adding .pbs for ACISS exec...

  • Joshua Burkhart Joshua Burkhart committed [9394e0]

    adding doi to readme following initial release

  • Joshua Burkhart committed [43cc3c]

    result serialization tested working on sample d...

  • Joshua Burkhart committed [094d94]

    waiting for tblastx to finish writing output

  • Joshua Burkhart committed [43bf9f]

    ..

  • Joshua Burkhart committed [249e46]

    ..

  • Joshua Burkhart Joshua Burkhart committed [561263]

    don't overwrite paralogs!

  • Mosquito-Lab committed [7c3e6a]

    adding logger & seq hashing

  • Mosquito-Lab committed [cc717a]

    csv creation tested working...

  • Mosquito-Lab committed [7538e3]

    updating unit tests..

  • Mosquito-Lab committed [6ace2b]

    now handling nil put results

  • Joshua Burkhart committed [a26681]

    ..

  • Mosquito-Lab committed [b1fb85]

    formatting a warning..

  • Mosquito-Lab committed [437847]

    beginning AccNumGrp unit testing...

  • Joshua Burkhart committed [d8b36b]

    adding code for execution against local blast db

  • Mosquito-Lab committed [7f6df0]

    Sequence tested working..

  • Mosquito-Lab committed [c7611f]

    ..

  • Mosquito-Lab committed [26d9f2]

    updating readme

  • Mosquito-Lab committed [444947]

    ignoring input dir and complying with

  • Joshua Burkhart Joshua Burkhart committed [122454]

    Updating & Formatting Readme

  • Joshua Burkhart Joshua Burkhart committed [430e48]

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  • Mosquito-Lab committed [0ba64e]

    ..

  • Joshua Burkhart committed [b91825]

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  • Joshua Burkhart Joshua Burkhart committed [8b7503]

    updating .pbs walltime for ACISS fatnodes queue

  • Joshua Burkhart committed [d314cb]

    ..

  • Mosquito-Lab committed [ab2fb3]

    ..

  • Joshua Burkhart Joshua Burkhart committed [ef930f]

    formatting, ignoring .zip files

  • Mosquito-Lab committed [fc69d9]

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  • Joshua Burkhart committed [37f24b]

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  • Joshua Burkhart committed [acbcc3]

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  • Joshua Burkhart committed [fa881c]

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  • Mosquito-Lab committed [123f08]

    SimpleFastaParser tested working..

  • Mosquito-Lab committed [bf208b]

    ..

  • Mosquito-Lab committed [faf12a]

    ignoring output/

  • Mosquito-Lab committed [9eb798]

    modifying sleeps for faster runtime

  • Joshua Burkhart committed [b65201]

    ..

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