-
Mosquito-Lab
committed
[f4a2cc]
now taking any non-space character for SEQ ID
-
Merge branch 'master' of github.com:joshuaburkh...
-
Updating & Formatting Readme
-
Mosquito-Lab
committed
[940e9e]
various updates after testing with duncan's dat...
-
Mosquito-Lab
committed
[bb7ea4]
parsing RNAseq data tested working...
-
Joshua Burkhart
committed
[3236a6]
..
-
Joshua Burkhart
committed
[2f3a5a]
should be faster and better at parsing e vals f...
-
Update README.md
-
Joshua Burkhart
committed
[9aa12a]
adding regular collection serialization
-
Updating & Formatting Readme
-
Joshua Burkhart
committed
[7a785c]
getting results for remaining seqs
-
Joshua Burkhart
committed
[3a4007]
checking for existing out files
-
Merge branch 'master' of github.com:joshuaburkh...
-
Mosquito-Lab
committed
[a8987a]
trying to add gene locus tags & names..
-
Joshua Burkhart
committed
[b68851]
modifying log handl
-
Updating .pbs in Readme
-
Mosquito-Lab
committed
[d05d26]
MicroArrayHashBuilder tested working
-
Joshua Burkhart
committed
[a36fe8]
..
-
Joshua Burkhart
committed
[b8b86b]
now using csv tabular format, optomizing for 32...
-
updating pbs for longfat
-
Mosquito-Lab
committed
[26cf40]
adding parameter logging
-
Joshua Burkhart
committed
[1f0b72]
..
-
Joshua Burkhart
committed
[368d34]
..
-
Joshua Burkhart
committed
[b709db]
..
-
Mosquito-Lab
committed
[38a535]
adding timer and catching EOF on puts...
-
Initial commit
-
Mosquito-Lab
committed
[b55303]
fixing ux bug
-
Joshua Burkhart
committed
[3f0b63]
modifying blast command / interaction / output ...
-
Mosquito-Lab
committed
[8f570a]
NCBIBlastRestult tested working..
-
Fixing Typo
-
Mosquito-Lab
committed
[e3cc31]
handling emperical errors..
-
Mosquito-Lab
committed
[857ed5]
working on adding orphan feature / seqs file
-
fixing regex to ignore existence of locus in db...
-
chmod +x deet_local_db.rb
-
Mosquito-Lab
committed
[4eddcb]
ready for full system test...
-
Mosquito-Lab
committed
[d87d1e]
initializing Sequence.@acc_num to "N/A"
-
removing \
-
Update README.md
-
Mosquito-Lab
committed
[3dfb5d]
Merge branch 'master' of https://github.com/jos...
-
Joshua Burkhart
committed
[a77618]
adding mismatch lines
-
Joshua Burkhart
committed
[c01251]
..
-
Mosquito-Lab
committed
[dab6e4]
..
-
Joshua Burkhart
committed
[5f3dcc]
modifying block structure
-
adding doi following initial release
-
Mosquito-Lab
committed
[f725f1]
now matching linked locus tags
-
Mosquito-Lab
committed
[b786a4]
just getting started..
-
Joshua Burkhart
committed
[152874]
modifying seq match regex
-
Mosquito-Lab
committed
[dab465]
working on seqs file creation..
-
Joshua Burkhart
committed
[ca0c31]
changing class name for load
-
Joshua Burkhart
committed
[f9ca90]
adding aptana project file, removing exit
-
Mosquito-Lab
committed
[929498]
updating readme..
-
Mosquito-Lab
committed
[41b847]
tested working
-
Mosquito-Lab
committed
[d65265]
finished step 2 of overview
-
Mosquito-Lab
committed
[6e6212]
Alignment tested working..
-
Joshua Burkhart
committed
[811ae1]
trying to catch AnnotFinder errors and hunreach...
-
Joshua Burkhart
committed
[dc0f44]
adding Errno::ENETUNREACH to possible network e...
-
Joshua Burkhart
committed
[4ff30a]
assuring outfile does not exist
-
Mosquito-Lab
committed
[6eb88f]
NCBIBlaster tested working...
-
Joshua Burkhart
committed
[232cae]
..
-
Joshua Burkhart
committed
[83e494]
reading with filehandl
-
Joshua Burkhart
committed
[86451e]
changing filename
-
changing filepaths & adding .pbs for ACISS exec...
-
adding doi to readme following initial release
-
Joshua Burkhart
committed
[43cc3c]
result serialization tested working on sample d...
-
Joshua Burkhart
committed
[094d94]
waiting for tblastx to finish writing output
-
Joshua Burkhart
committed
[43bf9f]
..
-
Joshua Burkhart
committed
[249e46]
..
-
don't overwrite paralogs!
-
Mosquito-Lab
committed
[7c3e6a]
adding logger & seq hashing
-
Mosquito-Lab
committed
[cc717a]
csv creation tested working...
-
Mosquito-Lab
committed
[7538e3]
updating unit tests..
-
Mosquito-Lab
committed
[6ace2b]
now handling nil put results
-
Joshua Burkhart
committed
[a26681]
..
-
Mosquito-Lab
committed
[b1fb85]
formatting a warning..
-
Mosquito-Lab
committed
[437847]
beginning AccNumGrp unit testing...
-
Joshua Burkhart
committed
[d8b36b]
adding code for execution against local blast db
-
Mosquito-Lab
committed
[7f6df0]
Sequence tested working..
-
Mosquito-Lab
committed
[c7611f]
..
-
Mosquito-Lab
committed
[26d9f2]
updating readme
-
Mosquito-Lab
committed
[444947]
ignoring input dir and complying with
-
Updating & Formatting Readme
-
..
-
Mosquito-Lab
committed
[0ba64e]
..
-
Joshua Burkhart
committed
[b91825]
..
-
updating .pbs walltime for ACISS fatnodes queue
-
Joshua Burkhart
committed
[d314cb]
..
-
Mosquito-Lab
committed
[ab2fb3]
..
-
formatting, ignoring .zip files
-
Mosquito-Lab
committed
[fc69d9]
..
-
Joshua Burkhart
committed
[37f24b]
..
-
Joshua Burkhart
committed
[acbcc3]
..
-
Joshua Burkhart
committed
[fa881c]
..
-
Mosquito-Lab
committed
[123f08]
SimpleFastaParser tested working..
-
Mosquito-Lab
committed
[bf208b]
..
-
Mosquito-Lab
committed
[faf12a]
ignoring output/
-
Mosquito-Lab
committed
[9eb798]
modifying sleeps for faster runtime
-
Joshua Burkhart
committed
[b65201]
..