https://sourceforge.net/p/deepmethod/wiki/InteroperabilityWithOtherSystems/Recent changes to InteroperabilityWithOtherSystemsenWed, 03 Feb 2021 06:38:44 -0000https://sourceforge.net/p/deepmethod/wiki/InteroperabilityWithOtherSystems/<div class="markdown_content"><pre>--- v1 +++ v2 @@ -23,7 +23,7 @@ Call DEEP: - dpdeepctl --default-name=model.ini + deepmethod --default-name=model.ini For each parameter set the following formatted file "/tmp/XXXXXX" will be generated: </pre> </div>KKozlovWed, 03 Feb 2021 06:38:44 -0000https://sourceforge.net61cda935280f8b43b3df6dc105ff437fb2d1bdf7https://sourceforge.net/p/deepmethod/wiki/InteroperabilityWithOtherSystems/<div class="markdown_content"><p><a class="" href="../InteroperabilityWithOtherSystems?action=diff&amp;version=4">Last modified</a> <a class="" href="/trac/DEEP/timeline?from=2015-01-15T11%3A22%3A22%2B04%3A00&amp;precision=second">4 weeks</a> ago</p> <div class="toc"> <ul> <li><a href="#octaver">Octave/R</a></li> </ul> </div> <h1 id="octaver">Octave/R</h1> <p>In parameter file for DEEP "model.ini" put: </p> <div class="codehilite"><pre><span class="k">[default_model]</span> <span class="na">convert</span><span class="o">=</span><span class="s">octave</span> <span class="na">parts</span><span class="o">=</span><span class="s">degradation_rate;1;pro1_strength;1;pro2_strength;1;</span> <span class="na">numdparms</span><span class="o">=</span><span class="s">3</span> <span class="na">numparms</span><span class="o">=</span><span class="s">3</span> <span class="na">nummask</span><span class="o">=</span><span class="s">3</span> <span class="na">numtweak</span><span class="o">=</span><span class="s">3</span> <span class="na">vallbound</span><span class="o">=</span><span class="s">0</span> <span class="na">valhbound</span><span class="o">=</span><span class="s">1</span> <span class="na">command</span><span class="o">=</span><span class="s">./objective_function</span> <span class="na">delimiters</span><span class="o">=</span><span class="s">\n</span> <span class="na">keys</span><span class="o">=</span><span class="s">0;</span> <span class="na">mapping</span><span class="o">=</span><span class="s">0;</span> </pre></div> <p>Call DEEP: </p> <div class="codehilite"><pre><span class="n">dpdeepctl</span> <span class="o">--</span><span class="k">default</span><span class="o">-</span><span class="n">name</span><span class="o">=</span><span class="n">model</span><span class="p">.</span><span class="n">ini</span> </pre></div> <p>For each parameter set the following formatted file "/tmp/XXXXXX" will be generated: </p> <div class="codehilite"><pre><span class="n">degradation_rate</span> <span class="o">=</span> <span class="mf">0.011114438</span><span class="p">;</span> <span class="n">pro1_strength</span> <span class="o">=</span> <span class="mf">0.239439572</span><span class="p">;</span> <span class="n">pro2_strength</span> <span class="o">=</span> <span class="mf">0.377516976</span><span class="p">;</span> </pre></div> <p>The command will be then called: </p> <div class="codehilite"><pre><span class="nx">objective_function</span> <span class="o">/</span><span class="nx">tmp</span><span class="o">/</span><span class="nx">XXXXXX</span> </pre></div> <p>In the "objective_function" script put the following line at the begining: </p> <div class="codehilite"><pre><span class="n">source</span><span class="p">(</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">]);</span> </pre></div> <p>The script should print the value to be minimized, i.e. the difference between the solution with given set of parameters abd the data. </p></div>KKozlovWed, 11 Feb 2015 12:39:36 -0000https://sourceforge.net5274975723cc3771f195a4603276583dd070729d