InteroperabilityWithOtherSystems

Last modified 4 weeks ago

• Octave/R

Octave/R

In parameter file for DEEP "model.ini" put:

[default_model]
convert=octave
parts=degradation_rate;1;pro1_strength;1;pro2_strength;1;
numdparms=3
numparms=3
nummask=3
numtweak=3
vallbound=0
valhbound=1
command=./objective_function
delimiters=\n
keys=0;
mapping=0;

Call DEEP:

deepmethod --default-name=model.ini

For each parameter set the following formatted file "/tmp/XXXXXX" will be generated:

degradation_rate =     0.011114438;
pro1_strength =     0.239439572;
pro2_strength =     0.377516976;

The command will be then called:

objective_function /tmp/XXXXXX

In the "objective_function" script put the following line at the begining:

source(args[1]);

The script should print the value to be minimized, i.e. the difference between the solution with given set of parameters abd the data.