Mismatched sequence numbers
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#1 Mismatched sequence numbers
DeconSeq Staff,
I'm finding that the number of sequences in my output fasta files at 90% coverage and 94% query do not match the reported outputs in the orange and green bargraph created by DeconSeq. Is there a bug with the generation of a fasta file using the selected query and coverage parameters?
For example: My bargraph shows 213,510 clean seqs and 477 contaminated. When I count the number of sequences in my files using grep I get 213,453 clean and 534 contaminated.
Thanks!
Amanda Dupuy