Activity for DDE-BIFTOOL
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Jan Sieber committed [440ab3] on git
modified: ddebiftool/dde_method_check.m
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dde_mult_deriv: passed on field hjac of funcs as option to dirderiv
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set_funcs:replaced get_nf for octave compatibility
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fixed bug in dde_coll_int, corrected function name in dde_psol_lincond
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removed development folder hcli_sd and .DS_Store
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modified: ddebiftool/dde_coll_roots.m
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modified: ddebiftool/dde_coll_delays.m
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renamed dde_hcli_lbc to dde_hcli_blc_ext to be able to add wrapper for folding back extension
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regenerated symbolic-generated derviatives
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copied in missing file cusp_dirderi with handwritten derivatives
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modified: ddebiftool/dde_hcli_jac_res.m
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new file: ddebiftool/dde_coll_int.m
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modified: ddebiftool/dde_add_cond.m
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updated hcli development files
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modified: ddebiftool/dde_coll_delays.m
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small change in plotting for linear_stability_demo.m
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renamed demos/linear_stability/linear_stablity_demo.m
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Merge branch 'master' of ssh://git.code.sf.net/p/ddebiftool/git
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dde_coll_profile_dot: fixed bug when options ind_comp is used
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modified: ddebiftool/dde_psol_jac_res.m
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modified: ddebiftool/dde_nullspace.m
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modified: ../../ddebiftool/p_correc.m
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modified: gen_sym_disctest.m
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adjusted recording of discretization errors in development/discretization for test_discreatization and gen_sym_disctest
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modified: ddebiftool/dde_coll_dot.m
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modified: ddebiftool/dde_psol_eig.m
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modified: ddebiftool/dde_coll_delays.m
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modified: ddebiftool/dde_coll_jac.m
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modified: dde_add_dist_delay.m
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modified: ddebiftool_extra_symbolic/private/dde_sym_xpattern.m
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modified: development/discretization/test_disc_condition.m
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new file: development/discretization/test_disc_nested.m
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modified: development/discretization/fixed_point_psol_jac.m
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changed development/discretization/fixed_point_psol_jac.m (still unfinished, to be tested with ScJacobian
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changed development/discretization/fixed_point_psol_jac.m (still unfinished, to be tested with ScJacobian
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modified: ddebiftool/dde_coll_bd_diff.m
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new file: demos/enso/enso_demo.m
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completed enso demo computations, ready to put to demo
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new file: enso_demo.m
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added MackeyGlass diagrams for manual
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fixed bug in dde_combined_funcs: for loop limit was sequence not its length
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fixed bug in dde_combined_funcs: for loop limit was sequence not its length
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removed unresolved references
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modified: ddebiftool/br_plot.m
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modified: ddebiftool/set_funcs.m
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modified: ddebiftool/p_tsgn.m
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modified: ddebiftool/dde_close_chain_delay.m
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modified: demos/daphnia_demo/contour_daphnia.m
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demo_daphnia updated to highres
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demo_daphnia updated to highres
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modified: ddebiftool/set_funcs.m
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short script estimating defect on fine mesh
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made interface more uiniform: dde_sym_dist_delay is responsible for converting sym into distdelay or chain delay and nothing else. It gets called inside dde_add_dist_delay and dde_add_chain_delay
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new file: ddebiftool/dde_coll_bd_diff.m
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modified: dde_coll_wrap_eva.m
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modified: dde_coll_jac.m
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modified: dde_coll_jac.m
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modified: contour_daphnia.m
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new file: contour_daphnia.m
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modified: ddebiftool/dde_close_chain_delay.m
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ddebiftool_extra_psol/set_psolbiffuncs.m: fixed bug when creating vpattern
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modified: ddebiftool/arg_array_expand.m
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demos/renewal_demo: corrected lhs_matrix in set_funcs
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Merge branch 'master' of ssh://git.code.sf.net/p/ddebiftool/git
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renamed: development/conv-demo/MackeyGlass_conv.m -> development/conv_demo/MackeyGlass_conv.m
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recomputed demo_daphnia, updating results_daphnia.mat
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demos/daphnia_demo/demo_daphnia.m: included manual shift of collocation interval to fit around inflection point
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demos/daphnia_demo/demo_daphnia.m: fixed bug ip.t0 -> ipe.t0
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new file: demos/daphnia_demo/daphnia_maths.tex
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modified: ddebiftool/dde_sym_int_delay.m
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modified: ddebiftool/dde_coll_rhs.m
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modified: ddebiftool_extra_nmfm/locate_BT.m
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modified: ddebiftool/br_stabl.m
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modified: ddebiftool/br_stabl.m
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new file: results_daphnia.mat
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removed ddebiftool/int_delay_recursive.m as this is not needed
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new file: ddebiftool/dde_add_chain_delay.m
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modified: ddebiftool_utilities/Plot2dBranch.m
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development/conv-demo/demo_daphnia.m: increased degree and removed adaptitivity to enable tracking of max slope at inflection of periodic orbit
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development/conv-demo/demo_daphnia.m: added code for tracking min slope
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development/conv-demo/demo_daphnia.m: plot full reproductive age
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development/conv-demo/demo_daphnia.m: plot full reproductive age
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development/conv_demo/demi_daphnia.m:added second branch of psol and check for infinite slope
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modified: ddebiftool/dir_deriv.m
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included plots and 2nd psol into daphnia demo
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new file: ddebiftool_extra_symbolic/dde_names_from_sym.m
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modified: ddebiftool/br_bp_solve.m
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modified: ddebiftool/arg_array_expand.m
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new file: demos/renewal_demo/renewal__discrete_demo.m
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modified: demos/renewal_demo/renewal_demo.m
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modified: ddebiftool/dde_add_dist_delay.m
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new file: dde_combined_funcs.m
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Changes to be committed:
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modified: .gitignore
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DDE-BIFTOOL released /alpha/dde_biftool_v3.2a3.zip
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modified: ddebiftool/br_contn.m
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changed strcmp to strncmp(...,end,3) in dde_sym2funcs.m to avoid problem in windows
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removed demo1_hcli1 test and avoid looking for dgenreate BT point in demo1_simple
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added multifile option to dd_sym2funcs and dde_symcode
